Wall clock time and date at job start Mon Mar 30 2020 05:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99833 * 2 1 4 4 H 1.48501 * 109.46896 * 269.99741 * 3 2 1 5 5 H 1.48499 * 109.47039 * 29.99902 * 3 2 1 6 6 H 1.48501 * 109.47275 * 149.99702 * 3 2 1 7 7 C 1.38811 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00530 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99622 * 359.72375 * 7 2 1 10 10 C 1.49552 * 126.21319 * 359.96766 * 9 7 2 11 11 C 1.49681 * 104.43774 * 186.57920 * 10 9 7 12 12 H 1.08998 * 108.16454 * 77.72050 * 11 10 9 13 13 C 1.49834 * 129.61700 * 211.56096 * 11 10 9 14 14 N 1.49738 * 105.17813 * 146.84028 * 13 11 10 15 15 C 1.46899 * 111.00206 * 115.59054 * 14 13 11 16 16 C 1.50703 * 109.46873 * 70.37217 * 15 14 13 17 17 C 1.38234 * 120.00168 * 269.72884 * 16 15 14 18 18 C 1.38232 * 120.00097 * 179.74241 * 17 16 15 19 19 C 1.38237 * 119.99781 * 0.53332 * 18 17 16 20 20 C 1.38231 * 120.00120 * 359.74203 * 19 18 17 21 21 C 1.38236 * 120.00054 * 359.97438 * 20 19 18 22 22 C 1.50098 * 107.60445 * 353.95931 * 14 13 11 23 23 C 1.51419 * 102.34111 * 334.09418 * 22 14 13 24 24 H 1.09007 * 111.42603 * 287.36409 * 23 22 14 25 25 C 1.49805 * 126.21209 * 180.27606 * 9 7 2 26 26 H 0.96995 * 120.00147 * 0.02562 * 1 2 3 27 27 H 1.08994 * 110.44599 * 305.44569 * 10 9 7 28 28 H 1.09000 * 110.44480 * 67.98684 * 10 9 7 29 29 H 1.09001 * 109.37734 * 28.24521 * 13 11 10 30 30 H 1.09000 * 110.96152 * 266.25129 * 13 11 10 31 31 H 1.08994 * 109.47634 * 190.37185 * 15 14 13 32 32 H 1.09009 * 109.47190 * 310.38024 * 15 14 13 33 33 H 1.08004 * 120.00132 * 359.97438 * 17 16 15 34 34 H 1.08000 * 120.00200 * 180.29342 * 18 17 16 35 35 H 1.08004 * 119.99961 * 179.77111 * 19 18 17 36 36 H 1.07999 * 120.00510 * 180.02562 * 20 19 18 37 37 H 1.07997 * 120.00165 * 179.97438 * 21 20 19 38 38 H 1.09001 * 110.82729 * 215.88531 * 22 14 13 39 39 H 1.08996 * 110.83215 * 92.30503 * 22 14 13 40 40 H 1.09007 * 110.90934 * 324.95286 * 25 9 7 41 41 H 1.09000 * 110.90702 * 88.51989 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0068 10 6 -0.1611 -2.5499 0.0141 11 6 -0.3755 -4.0214 0.1850 12 1 -0.2140 -4.2687 1.2342 13 6 -1.4809 -4.8920 -0.3298 14 7 -0.8415 -6.2188 -0.6000 15 6 -1.3940 -7.2582 0.2788 16 6 -2.8130 -7.5592 -0.1296 17 6 -3.8594 -6.8564 0.4378 18 6 -5.1607 -7.1288 0.0593 19 6 -5.4163 -8.1116 -0.8786 20 6 -4.3703 -8.8184 -1.4418 21 6 -3.0686 -8.5419 -1.0676 22 6 0.6359 -6.0628 -0.3857 23 6 0.8470 -4.5867 -0.6488 24 1 0.7625 -4.3553 -1.7107 25 6 1.9299 -3.7588 0.0140 26 1 -0.4850 0.8400 -0.0004 27 1 -0.5998 -2.0002 0.8468 28 1 -0.5855 -2.2130 -0.9316 29 1 -1.8772 -4.4661 -1.2516 30 1 -2.2732 -4.9956 0.4116 31 1 -0.7920 -8.1629 0.1946 32 1 -1.3797 -6.9069 1.3107 33 1 -3.6601 -6.0918 1.1742 34 1 -5.9779 -6.5764 0.4991 35 1 -6.4333 -8.3270 -1.1716 36 1 -4.5699 -9.5860 -2.1748 37 1 -2.2514 -9.0943 -1.5073 38 1 1.1968 -6.6676 -1.0983 39 1 0.9079 -6.3167 0.6387 40 1 2.8496 -3.7816 -0.5706 41 1 2.1109 -4.0987 1.0337 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685991827.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:14:53 Heat of formation + Delta-G solvation = 67.017096 kcal Electronic energy + Delta-G solvation = -20696.022671 eV Core-core repulsion = 17769.485122 eV Total energy + Delta-G solvation = -2926.537549 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.158 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.36028 -39.91665 -37.20839 -34.56113 -32.82836 -31.77179 -31.23633 -30.45586 -27.86218 -27.09369 -25.44210 -23.41967 -22.93284 -21.87749 -21.12948 -20.75405 -18.79188 -17.58584 -17.46312 -16.64289 -16.31590 -16.17449 -15.80334 -15.58321 -15.07545 -14.72014 -14.41437 -14.19443 -13.94584 -13.72338 -13.34219 -13.23978 -13.16010 -12.97735 -12.80595 -12.68018 -12.22328 -12.10232 -11.98156 -11.78370 -11.69322 -11.63229 -11.54581 -10.92563 -10.74408 -9.73737 -9.64675 -9.31715 -8.96142 -7.86148 -5.22298 0.48884 0.57903 1.44806 1.47419 1.55894 2.47022 2.75316 3.08805 3.19014 3.33514 3.43853 3.80850 3.91344 3.99993 4.20863 4.22594 4.29116 4.38227 4.41143 4.51192 4.59996 4.66487 4.68950 4.75440 4.76674 4.80016 4.83996 4.94335 5.03108 5.17360 5.22760 5.25091 5.39104 5.42571 5.56822 5.61502 5.68384 5.69296 5.71938 5.85923 6.06883 6.10020 6.20131 7.01898 7.68215 8.38581 9.25386 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.034884 B = 0.003822 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.472532 B = 7324.162714 C = 7913.503712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.069 4.069 3 Si 0.981 3.019 4 H -0.286 1.286 5 H -0.294 1.294 6 H -0.267 1.267 7 C -0.242 4.242 8 H 0.085 0.915 9 N -0.636 5.636 10 C 0.216 3.784 11 C -0.145 4.145 12 H 0.053 0.947 13 C 0.076 3.924 14 N -0.519 5.519 15 C 0.086 3.914 16 C -0.086 4.086 17 C -0.130 4.130 18 C -0.132 4.132 19 C -0.129 4.129 20 C -0.128 4.128 21 C -0.110 4.110 22 C 0.070 3.930 23 C -0.113 4.113 24 H 0.069 0.931 25 C 0.147 3.853 26 H 0.247 0.753 27 H 0.021 0.979 28 H -0.002 1.002 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.101 0.899 32 H 0.043 0.957 33 H 0.117 0.883 34 H 0.133 0.867 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.133 0.867 38 H 0.103 0.897 39 H 0.062 0.938 40 H 0.052 0.948 41 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.057 -19.693 -0.263 20.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.262 4.262 3 Si 0.809 3.191 4 H -0.213 1.213 5 H -0.221 1.221 6 H -0.192 1.192 7 C -0.371 4.371 8 H 0.103 0.897 9 N -0.364 5.364 10 C 0.091 3.909 11 C -0.165 4.165 12 H 0.072 0.928 13 C -0.052 4.052 14 N -0.243 5.243 15 C -0.041 4.041 16 C -0.087 4.087 17 C -0.149 4.149 18 C -0.150 4.150 19 C -0.147 4.147 20 C -0.146 4.146 21 C -0.128 4.128 22 C -0.057 4.057 23 C -0.133 4.133 24 H 0.087 0.913 25 C 0.023 3.977 26 H 0.056 0.944 27 H 0.039 0.961 28 H 0.017 0.983 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.119 0.881 32 H 0.061 0.939 33 H 0.135 0.865 34 H 0.151 0.849 35 H 0.158 0.842 36 H 0.160 0.840 37 H 0.151 0.849 38 H 0.121 0.879 39 H 0.081 0.919 40 H 0.070 0.930 41 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -7.160 -19.659 -0.760 20.936 hybrid contribution 0.365 1.810 0.891 2.050 sum -6.794 -17.849 0.131 19.099 Atomic orbital electron populations 1.70174 1.06406 1.25287 1.58436 1.25674 0.96634 1.01075 1.02793 0.85039 0.77636 0.78936 0.77480 1.21290 1.22072 1.19219 1.19518 0.91070 0.83665 1.42804 0.89711 1.46195 1.01649 1.00989 1.87535 1.19778 0.83902 0.89917 0.97320 1.22357 0.98150 0.96722 0.99315 0.92817 1.21806 0.94925 0.88478 0.99993 1.65371 1.03199 1.04353 1.51395 1.21247 0.92568 0.96186 0.94124 1.19849 0.94551 0.96722 0.97566 1.21262 0.93329 0.99525 1.00743 1.21381 0.96707 0.98501 0.98385 1.21456 1.00234 0.96135 0.96909 1.21457 0.92541 1.00371 1.00244 1.21235 0.97593 0.97514 0.96500 1.22436 0.88235 0.93722 1.01318 1.22661 0.96259 0.95284 0.99077 0.91265 1.21188 0.94973 0.84236 0.97312 0.94428 0.96088 0.98344 0.92160 0.91034 0.88102 0.93891 0.86542 0.84873 0.84173 0.84027 0.84882 0.87860 0.91936 0.92966 0.94809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.07 10.46 21.65 0.23 -58.84 16 2 C -0.07 -4.04 5.49 84.86 0.47 -3.57 16 3 Si 0.98 46.70 29.55 68.60 2.03 48.73 16 4 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 5 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 7 C -0.24 -13.94 10.34 84.03 0.87 -13.07 16 8 H 0.09 4.63 7.83 -2.91 -0.02 4.61 16 9 N -0.64 -33.91 3.50 -694.03 -2.43 -36.34 16 10 C 0.22 11.14 5.24 84.72 0.44 11.58 16 11 C -0.14 -5.65 2.75 -10.94 -0.03 -5.68 16 12 H 0.05 2.09 7.98 -2.39 -0.02 2.07 16 13 C 0.08 2.46 6.23 84.73 0.53 2.99 16 14 N -0.52 -14.16 5.28 -893.13 -4.71 -18.87 16 15 C 0.09 1.92 4.83 85.56 0.41 2.33 16 16 C -0.09 -1.95 5.12 -19.86 -0.10 -2.05 16 17 C -0.13 -2.97 8.65 22.27 0.19 -2.78 16 18 C -0.13 -2.66 10.05 22.27 0.22 -2.44 16 19 C -0.13 -2.32 10.05 22.27 0.22 -2.10 16 20 C -0.13 -2.29 10.05 22.27 0.22 -2.07 16 21 C -0.11 -2.21 9.70 22.27 0.22 -1.99 16 22 C 0.07 1.85 6.47 85.16 0.55 2.40 16 23 C -0.11 -4.01 3.29 -9.85 -0.03 -4.04 16 24 H 0.07 2.73 8.14 -2.38 -0.02 2.72 16 25 C 0.15 6.07 7.02 85.27 0.60 6.66 16 26 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 27 H 0.02 1.21 7.16 -2.39 -0.02 1.20 16 28 H 0.00 -0.10 7.88 -2.39 -0.02 -0.11 16 29 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.07 2.15 5.35 -2.39 -0.01 2.13 16 31 H 0.10 1.84 8.03 -2.39 -0.02 1.82 16 32 H 0.04 0.97 7.99 -2.38 -0.02 0.95 16 33 H 0.12 2.63 6.90 -2.91 -0.02 2.61 16 34 H 0.13 2.20 8.06 -2.91 -0.02 2.18 16 35 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 36 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 37 H 0.13 2.26 8.06 -2.91 -0.02 2.23 16 38 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.06 1.51 7.89 -2.39 -0.02 1.49 16 40 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 41 H 0.03 1.33 8.12 -2.39 -0.02 1.32 16 Total: -1.00 -68.06 323.63 0.89 -67.17 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: 0.99 Total: 11.98 kcal Atomic # 6 Polarization: -18.62 SS G_CDS: 4.79 Total: -13.83 kcal Atomic # 7 Polarization: -107.13 SS G_CDS: -6.92 Total: -114.05 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal Total: -68.06 0.89 -67.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685991827.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.192 kcal (2) G-P(sol) polarization free energy of solvation -68.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds