Wall clock time and date at job start Mon Mar 30 2020 05:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46959 * 110.99801 * 2 1 4 4 C 1.53047 * 109.36510 * 183.18918 * 3 2 1 5 5 N 1.46959 * 109.36762 * 301.59559 * 4 3 2 6 6 C 1.46897 * 111.00537 * 183.18646 * 5 4 3 7 7 C 1.53006 * 109.46573 * 66.04533 * 6 5 4 8 8 O 1.42901 * 109.46804 * 65.00294 * 7 6 5 9 9 C 1.42899 * 113.99607 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.46876 * 179.97438 * 9 8 7 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 9 8 12 12 C 1.37884 * 119.99942 * 179.72213 * 10 9 8 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 9 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 9 15 15 H 1.48501 * 109.47188 * 90.00793 * 14 12 10 16 16 H 1.48501 * 109.47085 * 210.00372 * 14 12 10 17 17 H 1.48498 * 109.47634 * 330.00608 * 14 12 10 18 18 C 1.46959 * 110.87589 * 59.32061 * 5 4 3 19 19 C 1.46959 * 111.00537 * 123.79614 * 2 1 3 20 20 H 1.09000 * 109.48802 * 296.80643 * 19 2 1 21 21 C 1.50699 * 109.48589 * 56.84504 * 19 2 1 22 22 O 1.20825 * 119.99908 * 20.00450 * 21 19 2 23 23 O 1.34231 * 120.00469 * 200.00256 * 21 19 2 24 24 H 1.08994 * 109.47073 * 56.05091 * 1 2 3 25 25 H 1.09009 * 109.46703 * 176.04718 * 1 2 3 26 26 H 1.09000 * 109.47298 * 296.04366 * 1 2 3 27 27 H 1.08997 * 109.49041 * 63.21920 * 3 2 1 28 28 H 1.09000 * 109.48715 * 303.15312 * 3 2 1 29 29 H 1.09000 * 109.48830 * 181.62959 * 4 3 2 30 30 H 1.09000 * 109.49140 * 61.56605 * 4 3 2 31 31 H 1.08997 * 109.47142 * 306.05059 * 6 5 4 32 32 H 1.08995 * 109.47294 * 186.04666 * 6 5 4 33 33 H 1.08995 * 109.47721 * 304.99997 * 7 6 5 34 34 H 1.09001 * 109.46499 * 184.99873 * 7 6 5 35 35 H 1.09004 * 109.47206 * 60.00168 * 9 8 7 36 36 H 1.08994 * 109.47548 * 299.99825 * 9 8 7 37 37 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 38 38 H 1.08997 * 109.49041 * 60.65087 * 18 5 4 39 39 H 1.09000 * 109.48715 * 180.71695 * 18 5 4 40 40 H 0.96691 * 117.00316 * 180.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5233 1.3292 -0.0803 5 7 4.0501 0.5661 1.0598 6 6 5.5191 0.5661 1.0598 7 6 6.0290 1.9874 1.3063 8 8 5.6509 2.4081 2.6187 9 6 6.0812 3.7294 2.9519 10 6 5.6299 4.0671 4.3496 11 1 5.0709 3.3447 4.9259 12 6 5.9362 5.2959 4.8949 13 7 6.6173 6.1753 4.1933 14 14 5.3835 5.7115 6.6302 15 1 6.4332 5.2990 7.5962 16 1 5.1570 7.1750 6.7404 17 1 4.1210 4.9909 6.9336 18 6 3.5235 -0.8059 1.0598 19 6 1.9958 -0.7631 1.1401 20 1 1.6935 -0.2822 2.0704 21 6 1.4506 -2.1675 1.1000 22 8 1.0121 -2.6160 0.0673 23 8 1.4522 -2.9202 2.2114 24 1 -0.3633 0.5739 -0.8524 25 1 -0.3633 -1.0253 -0.0708 26 1 -0.3634 0.4512 0.9233 27 1 1.6937 1.8774 0.9173 28 1 1.6012 1.9128 -0.8603 29 1 3.9176 2.3450 -0.0513 30 1 3.8253 0.8481 -1.0106 31 1 5.8824 0.2120 0.0951 32 1 5.8824 -0.0923 1.8488 33 1 5.5944 2.6624 0.5691 34 1 7.1153 2.0040 1.2183 35 1 5.6479 4.4408 2.2488 36 1 7.1685 3.7819 2.8982 37 1 6.8324 7.0400 4.5768 38 1 3.8254 -1.3114 0.1425 39 1 3.9179 -1.3468 1.9201 40 1 1.0926 -3.8146 2.1364 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686097444.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:52 Heat of formation + Delta-G solvation = -114.795385 kcal Electronic energy + Delta-G solvation = -21611.775216 eV Core-core repulsion = 18234.211673 eV Total energy + Delta-G solvation = -3377.563544 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.86050 -38.98958 -36.94464 -36.26319 -35.16368 -32.68184 -31.61183 -30.16374 -27.75405 -26.50427 -25.02866 -23.67384 -22.63740 -22.24490 -20.79957 -19.79574 -18.30686 -17.05770 -16.41860 -16.15019 -16.03702 -15.62299 -15.17905 -14.98258 -14.60209 -14.41437 -14.22348 -14.02240 -13.60020 -13.08485 -12.96546 -12.60814 -12.26529 -12.00430 -11.71543 -11.69535 -11.56105 -11.39376 -11.15406 -10.91156 -10.80023 -10.71631 -10.58746 -10.28651 -9.95927 -9.06108 -8.77475 -8.60217 -8.21093 -8.09987 -6.08206 -4.09046 1.94283 2.63127 3.31984 3.36982 3.42658 3.67146 3.97222 4.37379 4.60100 4.80589 4.86348 4.95318 5.03391 5.20076 5.26738 5.28465 5.34027 5.38101 5.51040 5.55993 5.62176 5.70821 5.75732 5.81446 5.94962 6.02862 6.12505 6.26260 6.26387 6.63981 6.74697 7.09402 7.10752 7.16512 7.46559 7.70988 7.83625 8.19858 8.64489 9.05660 9.55775 11.03484 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.022671 B = 0.003892 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.753767 B = 7191.621011 C = 7469.299223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.527 5.527 3 C 0.060 3.940 4 C 0.051 3.949 5 N -0.522 5.522 6 C 0.063 3.937 7 C 0.066 3.934 8 O -0.380 6.380 9 C 0.194 3.806 10 C -0.510 4.510 11 H 0.066 0.934 12 C 0.055 3.945 13 N -0.900 5.900 14 Si 0.907 3.093 15 H -0.279 1.279 16 H -0.286 1.286 17 H -0.272 1.272 18 C 0.071 3.929 19 C 0.096 3.904 20 H 0.090 0.910 21 C 0.485 3.515 22 O -0.498 6.498 23 O -0.513 6.513 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.028 0.972 27 H 0.054 0.946 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.041 0.959 31 H 0.042 0.958 32 H 0.083 0.917 33 H 0.037 0.963 34 H 0.041 0.959 35 H 0.003 0.997 36 H 0.002 0.998 37 H 0.263 0.737 38 H 0.045 0.955 39 H 0.091 0.909 40 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.152 -14.669 -8.783 19.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.253 5.253 3 C -0.068 4.068 4 C -0.077 4.077 5 N -0.247 5.247 6 C -0.065 4.065 7 C -0.012 4.012 8 O -0.299 6.299 9 C 0.120 3.880 10 C -0.549 4.549 11 H 0.085 0.915 12 C -0.145 4.145 13 N -0.540 5.540 14 Si 0.734 3.266 15 H -0.205 1.205 16 H -0.212 1.212 17 H -0.196 1.196 18 C -0.058 4.058 19 C -0.014 4.014 20 H 0.107 0.893 21 C 0.326 3.674 22 O -0.384 6.384 23 O -0.325 6.325 24 H 0.093 0.907 25 H 0.096 0.904 26 H 0.046 0.954 27 H 0.072 0.928 28 H 0.105 0.895 29 H 0.110 0.890 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.102 0.898 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.021 0.979 36 H 0.020 0.980 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.109 0.891 40 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -9.141 -14.321 -8.894 19.177 hybrid contribution -0.325 -0.030 0.594 0.678 sum -9.466 -14.351 -8.300 19.091 Atomic orbital electron populations 1.22561 0.86640 1.03273 1.00939 1.61964 1.08446 1.14412 1.40523 1.22239 0.94904 0.87526 1.02094 1.22287 0.93961 0.99856 0.91564 1.62006 1.08298 1.11567 1.42817 1.22147 0.86059 0.98178 1.00074 1.22259 0.97070 0.93614 0.88251 1.87947 1.78712 1.35006 1.28284 1.20174 0.93867 0.77982 0.96000 1.21064 1.35061 1.00090 0.98640 0.91542 1.24942 0.95237 0.95876 0.98476 1.69966 1.39569 1.07134 1.37315 0.86357 0.79168 0.77346 0.83742 1.20512 1.21152 1.19633 1.21988 0.90443 0.91458 1.01889 1.21213 0.96519 0.87912 0.95750 0.89278 1.23239 0.75307 0.88218 0.80655 1.90698 1.42740 1.72832 1.32138 1.84569 1.77723 1.30961 1.39234 0.90698 0.90446 0.95355 0.92803 0.89487 0.89039 0.94085 0.93991 0.89820 0.94487 0.94123 0.97931 0.98009 0.92742 0.93699 0.89053 0.73143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.14 60.06 0.55 0.70 16 2 N -0.53 -6.52 4.52 -236.13 -1.07 -7.58 16 3 C 0.06 0.73 5.62 -3.77 -0.02 0.71 16 4 C 0.05 0.68 5.41 -3.77 -0.02 0.66 16 5 N -0.52 -7.64 4.66 -234.47 -1.09 -8.73 16 6 C 0.06 0.91 5.34 -3.82 -0.02 0.89 16 7 C 0.07 1.19 6.00 37.16 0.22 1.41 16 8 O -0.38 -9.07 10.27 -35.23 -0.36 -9.43 16 9 C 0.19 5.31 5.69 36.01 0.20 5.52 16 10 C -0.51 -15.05 9.43 -34.44 -0.32 -15.38 16 11 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 12 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 13 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 14 Si 0.91 21.89 29.54 -169.99 -5.02 16.87 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 16 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 18 C 0.07 0.89 4.87 -3.77 -0.02 0.88 16 19 C 0.10 1.18 2.47 -68.81 -0.17 1.01 16 20 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 21 C 0.49 5.60 6.77 36.01 0.24 5.85 16 22 O -0.50 -6.85 15.50 -18.75 -0.29 -7.14 16 23 O -0.51 -4.58 13.42 -39.26 -0.53 -5.11 16 24 H 0.07 0.71 8.13 -51.93 -0.42 0.29 16 25 H 0.08 0.89 5.85 -51.92 -0.30 0.59 16 26 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.09 0.90 8.13 -51.93 -0.42 0.48 16 29 H 0.09 1.28 6.24 -51.93 -0.32 0.96 16 30 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.04 0.51 8.12 -51.93 -0.42 0.09 16 32 H 0.08 1.20 8.03 -51.93 -0.42 0.79 16 33 H 0.04 0.64 6.28 -51.93 -0.33 0.32 16 34 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 36 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 37 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 38 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.09 1.08 8.07 -51.93 -0.42 0.66 16 40 H 0.41 1.75 9.10 45.56 0.41 2.17 16 LS Contribution 327.94 15.07 4.94 4.94 Total: -1.00 -33.96 327.94 -7.70 -41.67 By element: Atomic # 1 Polarization: 2.56 SS G_CDS: -5.57 Total: -3.00 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: 0.55 Total: 3.75 kcal Atomic # 7 Polarization: -41.12 SS G_CDS: -1.42 Total: -42.54 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -1.18 Total: -21.68 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.96 -7.70 -41.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686097444.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.129 kcal (2) G-P(sol) polarization free energy of solvation -33.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds