Wall clock time and date at job start Mon Mar 30 2020 05:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46904 * 110.99699 * 2 1 4 4 H 1.09005 * 109.54465 * 34.82454 * 3 2 1 5 5 C 1.53175 * 109.61873 * 274.59818 * 3 2 1 6 6 C 1.53091 * 109.16553 * 183.10942 * 5 3 2 7 7 O 1.42906 * 109.41401 * 57.61008 * 6 5 3 8 8 C 1.42903 * 114.15252 * 298.87667 * 7 6 5 9 9 C 1.53088 * 109.41407 * 61.05846 * 8 7 6 10 10 H 1.08997 * 109.52354 * 62.42789 * 9 8 7 11 11 O 1.42905 * 109.52270 * 182.55227 * 9 8 7 12 12 C 1.42904 * 113.99950 * 269.87232 * 11 9 8 13 13 C 1.50699 * 109.46916 * 179.97438 * 12 11 9 14 14 O 1.21280 * 120.00276 * 0.02562 * 13 12 11 15 15 N 1.34782 * 119.99692 * 180.02562 * 13 12 11 16 16 C 1.46497 * 120.00016 * 180.02562 * 15 13 12 17 17 C 1.50694 * 109.47115 * 179.97438 * 16 15 13 18 18 H 1.08000 * 120.00563 * 359.97438 * 17 16 15 19 19 C 1.37885 * 119.99902 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99913 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99766 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46985 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47276 * 299.99832 * 21 19 17 24 24 H 1.48498 * 109.47150 * 60.00043 * 21 19 17 25 25 H 1.09001 * 109.47110 * 299.99594 * 1 2 3 26 26 H 1.08994 * 109.47510 * 59.99979 * 1 2 3 27 27 H 1.08997 * 109.46899 * 180.02562 * 1 2 3 28 28 H 1.00900 * 111.00213 * 123.95190 * 2 1 3 29 29 H 1.08998 * 109.52546 * 303.02370 * 5 3 2 30 30 H 1.09003 * 109.51718 * 63.14298 * 5 3 2 31 31 H 1.09000 * 109.47915 * 177.59420 * 6 5 3 32 32 H 1.08998 * 109.48001 * 297.62795 * 6 5 3 33 33 H 1.08997 * 109.43078 * 301.10844 * 8 7 6 34 34 H 1.08998 * 109.53681 * 181.07733 * 8 7 6 35 35 H 1.09002 * 109.46808 * 60.00251 * 12 11 9 36 36 H 1.09000 * 109.47026 * 300.00236 * 12 11 9 37 37 H 0.97001 * 119.99765 * 359.97438 * 15 13 12 38 38 H 1.09007 * 109.47078 * 59.99547 * 16 15 13 39 39 H 1.09003 * 109.46733 * 300.00270 * 16 15 13 40 40 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.3388 2.0141 0.5866 5 6 2.0717 1.8931 -1.4382 6 6 2.6934 3.2921 -1.4331 7 8 3.9852 3.2356 -0.8248 8 6 3.9723 2.7992 0.5359 9 6 3.4004 1.3811 0.6101 10 1 4.0437 0.6994 0.0537 11 8 3.3311 0.9649 1.9754 12 6 4.5081 0.3020 2.4415 13 6 4.3255 -0.0899 3.8851 14 8 3.2893 0.1722 4.4583 15 7 5.3139 -0.7317 4.5393 16 6 5.1362 -1.1132 5.9425 17 6 6.3775 -1.8121 6.4341 18 1 7.2149 -1.9580 5.7678 19 6 6.4439 -2.2664 7.7342 20 7 5.4240 -2.0892 8.5455 21 14 7.9823 -3.1333 8.3433 22 1 7.8023 -3.5200 9.7658 23 1 8.2216 -4.3496 7.5257 24 1 9.1463 -2.2191 8.2228 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8306 -0.5261 0.7814 29 1 2.6884 1.2226 -2.0367 30 1 1.0685 1.9408 -1.8620 31 1 2.7894 3.6509 -2.4579 32 1 2.0550 3.9715 -0.8683 33 1 3.3516 3.4728 1.1268 34 1 4.9887 2.8024 0.9294 35 1 5.3623 0.9733 2.3529 36 1 4.6839 -0.5909 1.8416 37 1 6.1425 -0.9416 4.0808 38 1 4.2822 -1.7848 6.0312 39 1 4.9599 -0.2202 6.5423 40 1 5.4706 -2.4091 9.4601 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686578350.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:12 Heat of formation + Delta-G solvation = -131.907408 kcal Electronic energy + Delta-G solvation = -21193.408438 eV Core-core repulsion = 17815.102861 eV Total energy + Delta-G solvation = -3378.305577 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.18107 -38.86146 -37.18404 -35.99579 -34.20615 -32.38393 -31.67078 -30.66499 -28.50574 -26.37498 -26.06780 -23.65272 -23.01867 -22.42687 -20.63025 -19.80014 -17.52584 -17.17098 -16.79889 -16.43105 -15.72980 -15.67787 -15.29387 -15.07717 -15.05873 -14.58784 -14.16798 -13.79249 -13.59751 -13.35937 -13.00243 -12.91190 -12.38303 -12.10940 -11.95871 -11.89218 -11.64113 -11.50330 -11.18782 -11.02665 -10.89347 -10.65371 -10.34071 -10.27037 -9.46767 -9.44932 -9.07194 -8.76735 -8.67734 -7.94930 -6.19252 -4.26768 3.04099 3.23741 3.26088 3.28897 3.30402 3.64696 3.92439 4.21669 4.33379 4.46044 4.56844 4.80829 4.83822 4.91931 5.10972 5.14541 5.16716 5.21218 5.24716 5.33181 5.37767 5.40984 5.44896 5.48820 5.58012 5.69574 5.74700 5.91601 6.70878 6.77561 7.03482 7.18454 7.26742 7.37045 7.47340 7.62712 7.93191 8.54821 8.73783 9.02530 9.39763 10.90892 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.033628 B = 0.003216 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.450218 B = 8704.750836 C = 9183.146743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.689 5.689 3 C 0.089 3.911 4 H 0.055 0.945 5 C -0.141 4.141 6 C 0.057 3.943 7 O -0.376 6.376 8 C 0.042 3.958 9 C 0.051 3.949 10 H 0.080 0.920 11 O -0.352 6.352 12 C 0.042 3.958 13 C 0.499 3.501 14 O -0.537 6.537 15 N -0.710 5.710 16 C 0.252 3.748 17 C -0.545 4.545 18 H 0.063 0.937 19 C 0.064 3.936 20 N -0.885 5.885 21 Si 0.905 3.095 22 H -0.285 1.285 23 H -0.275 1.275 24 H -0.275 1.275 25 H 0.026 0.974 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.353 0.647 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.099 0.901 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.391 0.609 38 H 0.028 0.972 39 H 0.028 0.972 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.488 7.700 -20.484 22.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.320 5.320 3 C -0.021 4.021 4 H 0.073 0.927 5 C -0.179 4.179 6 C -0.020 4.020 7 O -0.295 6.295 8 C -0.035 4.035 9 C -0.008 4.008 10 H 0.098 0.902 11 O -0.270 6.270 12 C -0.038 4.038 13 C 0.282 3.718 14 O -0.414 6.414 15 N -0.360 5.360 16 C 0.131 3.869 17 C -0.584 4.584 18 H 0.081 0.919 19 C -0.140 4.140 20 N -0.522 5.522 21 Si 0.732 3.268 22 H -0.211 1.211 23 H -0.200 1.200 24 H -0.200 1.200 25 H 0.044 0.956 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.173 0.827 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.116 0.884 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.118 0.882 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.224 0.776 38 H 0.046 0.954 39 H 0.046 0.954 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.270 7.845 -20.488 22.562 hybrid contribution 0.957 -0.489 1.148 1.572 sum -4.313 7.356 -19.339 21.136 Atomic orbital electron populations 1.22219 0.87715 1.02025 1.00253 1.60498 1.08051 1.12894 1.50591 1.21641 0.94097 0.90962 0.95419 0.92681 1.22248 1.02303 0.97045 0.96352 1.22670 0.84715 0.95865 0.98781 1.87950 1.28746 1.87144 1.25659 1.23067 1.02744 0.94289 0.83449 1.22980 0.97510 0.96614 0.83733 0.90209 1.88036 1.37046 1.76517 1.25392 1.22439 0.88801 0.97607 0.94996 1.20052 0.84833 0.79554 0.87375 1.90691 1.27593 1.54513 1.68622 1.46382 1.16895 1.57271 1.15490 1.19126 0.97484 0.95796 0.74473 1.21179 1.00812 1.39130 0.97254 0.91862 1.24959 0.96831 0.95777 0.96432 1.69967 1.30275 1.45410 1.06589 0.86453 0.82597 0.79871 0.77864 1.21050 1.20028 1.20036 0.95581 0.92005 0.91308 0.82719 0.90022 0.90442 0.88367 0.93018 0.91996 0.88245 0.90626 0.90366 0.77628 0.95435 0.95434 0.92331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.50 60.06 0.63 0.90 16 2 N -0.69 -7.76 6.67 -113.81 -0.76 -8.52 16 3 C 0.09 0.96 2.28 -67.53 -0.15 0.81 16 4 H 0.06 0.65 7.80 -51.93 -0.41 0.24 16 5 C -0.14 -1.21 5.63 -26.59 -0.15 -1.36 16 6 C 0.06 0.47 6.84 37.20 0.25 0.72 16 7 O -0.38 -4.02 10.76 -35.23 -0.38 -4.40 16 8 C 0.04 0.45 6.47 37.20 0.24 0.69 16 9 C 0.05 0.58 2.31 -26.59 -0.06 0.52 16 10 H 0.08 0.86 7.79 -51.93 -0.40 0.46 16 11 O -0.35 -5.20 8.82 -55.14 -0.49 -5.69 16 12 C 0.04 0.58 6.23 36.01 0.22 0.81 16 13 C 0.50 9.92 7.91 -10.98 -0.09 9.83 16 14 O -0.54 -13.30 16.50 -14.35 -0.24 -13.53 16 15 N -0.71 -14.62 5.55 -61.47 -0.34 -14.96 16 16 C 0.25 6.62 5.43 -5.20 -0.03 6.59 16 17 C -0.55 -14.64 9.28 -34.44 -0.32 -14.95 16 18 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 20 N -0.89 -25.97 13.29 55.43 0.74 -25.24 16 21 Si 0.91 20.65 29.54 -169.99 -5.02 15.63 16 22 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 24 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 25 H 0.03 0.27 8.06 -51.93 -0.42 -0.15 16 26 H 0.06 0.52 7.54 -51.93 -0.39 0.13 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.35 4.47 7.86 -39.29 -0.31 4.16 16 29 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.08 0.58 7.58 -51.93 -0.39 0.18 16 31 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.10 0.98 7.94 -51.93 -0.41 0.57 16 35 H 0.08 0.86 7.94 -51.93 -0.41 0.45 16 36 H 0.08 0.90 8.09 -51.93 -0.42 0.48 16 37 H 0.39 6.71 8.32 -40.82 -0.34 6.37 16 38 H 0.03 0.80 8.14 -51.92 -0.42 0.38 16 39 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.27 7.35 8.31 -40.82 -0.34 7.02 16 LS Contribution 332.61 15.07 5.01 5.01 Total: -1.00 -32.81 332.61 -7.42 -40.23 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -6.40 Total: 5.24 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: 0.45 Total: 6.21 kcal Atomic # 7 Polarization: -48.35 SS G_CDS: -0.36 Total: -48.72 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -1.10 Total: -23.62 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.81 -7.42 -40.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686578350.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.676 kcal (2) G-P(sol) polarization free energy of solvation -32.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds