Wall clock time and date at job start Mon Mar 30 2020 05:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46904 * 110.99699 * 2 1 4 4 H 1.09005 * 109.54465 * 34.82454 * 3 2 1 5 5 C 1.53175 * 109.61873 * 274.59818 * 3 2 1 6 6 C 1.53091 * 109.16553 * 183.10942 * 5 3 2 7 7 O 1.42906 * 109.41401 * 57.61008 * 6 5 3 8 8 C 1.42903 * 114.15252 * 298.87667 * 7 6 5 9 9 C 1.53088 * 109.41407 * 61.05846 * 8 7 6 10 10 H 1.08997 * 109.52354 * 62.42789 * 9 8 7 11 11 O 1.42905 * 109.52270 * 182.55227 * 9 8 7 12 12 C 1.42904 * 113.99950 * 269.87232 * 11 9 8 13 13 C 1.50699 * 109.46916 * 179.97438 * 12 11 9 14 14 O 1.21280 * 120.00276 * 0.02562 * 13 12 11 15 15 N 1.34782 * 119.99692 * 180.02562 * 13 12 11 16 16 C 1.46497 * 120.00016 * 180.02562 * 15 13 12 17 17 C 1.50694 * 109.47115 * 179.97438 * 16 15 13 18 18 H 1.08000 * 120.00563 * 359.97438 * 17 16 15 19 19 C 1.37885 * 119.99902 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99913 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99766 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46985 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47276 * 299.99832 * 21 19 17 24 24 H 1.48498 * 109.47150 * 60.00043 * 21 19 17 25 25 H 1.09001 * 109.47110 * 299.99594 * 1 2 3 26 26 H 1.08994 * 109.47510 * 59.99979 * 1 2 3 27 27 H 1.08997 * 109.46899 * 180.02562 * 1 2 3 28 28 H 1.00900 * 111.00213 * 123.95190 * 2 1 3 29 29 H 1.08998 * 109.52546 * 303.02370 * 5 3 2 30 30 H 1.09003 * 109.51718 * 63.14298 * 5 3 2 31 31 H 1.09000 * 109.47915 * 177.59420 * 6 5 3 32 32 H 1.08998 * 109.48001 * 297.62795 * 6 5 3 33 33 H 1.08997 * 109.43078 * 301.10844 * 8 7 6 34 34 H 1.08998 * 109.53681 * 181.07733 * 8 7 6 35 35 H 1.09002 * 109.46808 * 60.00251 * 12 11 9 36 36 H 1.09000 * 109.47026 * 300.00236 * 12 11 9 37 37 H 0.97001 * 119.99765 * 359.97438 * 15 13 12 38 38 H 1.09007 * 109.47078 * 59.99547 * 16 15 13 39 39 H 1.09003 * 109.46733 * 300.00270 * 16 15 13 40 40 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.3388 2.0141 0.5866 5 6 2.0717 1.8931 -1.4382 6 6 2.6934 3.2921 -1.4331 7 8 3.9852 3.2356 -0.8248 8 6 3.9723 2.7992 0.5359 9 6 3.4004 1.3811 0.6101 10 1 4.0437 0.6994 0.0537 11 8 3.3311 0.9649 1.9754 12 6 4.5081 0.3020 2.4415 13 6 4.3255 -0.0899 3.8851 14 8 3.2893 0.1722 4.4583 15 7 5.3139 -0.7317 4.5393 16 6 5.1362 -1.1132 5.9425 17 6 6.3775 -1.8121 6.4341 18 1 7.2149 -1.9580 5.7678 19 6 6.4439 -2.2664 7.7342 20 7 5.4240 -2.0892 8.5455 21 14 7.9823 -3.1333 8.3433 22 1 7.8023 -3.5200 9.7658 23 1 8.2216 -4.3496 7.5257 24 1 9.1463 -2.2191 8.2228 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8306 -0.5261 0.7814 29 1 2.6884 1.2226 -2.0367 30 1 1.0685 1.9408 -1.8620 31 1 2.7894 3.6509 -2.4579 32 1 2.0550 3.9715 -0.8683 33 1 3.3516 3.4728 1.1268 34 1 4.9887 2.8024 0.9294 35 1 5.3623 0.9733 2.3529 36 1 4.6839 -0.5909 1.8416 37 1 6.1425 -0.9416 4.0808 38 1 4.2822 -1.7848 6.0312 39 1 4.9599 -0.2202 6.5423 40 1 5.4706 -2.4091 9.4601 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686578350.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:12 Heat of formation + Delta-G solvation = -158.669139 kcal Electronic energy + Delta-G solvation = -21194.568913 eV Core-core repulsion = 17815.102861 eV Total energy + Delta-G solvation = -3379.466052 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.13008 -40.36085 -38.24767 -36.88069 -36.14132 -34.38689 -32.43829 -31.59337 -30.11726 -28.00330 -26.88307 -24.67902 -24.29965 -23.70515 -21.72492 -21.24359 -19.10118 -18.32801 -17.73223 -17.66701 -17.17735 -16.83884 -16.69786 -16.20237 -16.14004 -16.07066 -15.19359 -15.04135 -14.88177 -14.51194 -14.07301 -13.99767 -13.92578 -13.68276 -13.36966 -12.95190 -12.86050 -12.68366 -12.62086 -12.30738 -12.23662 -11.90368 -11.54120 -11.51859 -11.09347 -10.80151 -10.78030 -10.35167 -9.88063 -9.54881 -8.29573 -6.46620 1.43838 1.48023 1.56088 1.66936 1.86963 2.38182 2.78120 3.02269 3.05488 3.19083 3.56314 3.75982 3.85856 3.99795 4.06496 4.17726 4.18487 4.27843 4.37689 4.45776 4.52898 4.64059 4.66333 4.70961 4.82700 4.95525 5.00523 5.08716 5.20836 5.21681 5.45171 5.63354 5.82632 5.86990 5.94803 6.20135 6.25193 6.63768 6.86329 7.22461 7.44210 8.82512 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.033628 B = 0.003216 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.450218 B = 8704.750836 C = 9183.146743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.691 5.691 3 C 0.086 3.914 4 H 0.039 0.961 5 C -0.132 4.132 6 C 0.053 3.947 7 O -0.387 6.387 8 C 0.044 3.956 9 C 0.053 3.947 10 H 0.092 0.908 11 O -0.380 6.380 12 C 0.056 3.944 13 C 0.494 3.506 14 O -0.594 6.594 15 N -0.702 5.702 16 C 0.267 3.733 17 C -0.557 4.557 18 H 0.087 0.913 19 C 0.003 3.997 20 N -0.932 5.932 21 Si 0.986 3.014 22 H -0.287 1.287 23 H -0.261 1.261 24 H -0.261 1.261 25 H 0.012 0.988 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.343 0.657 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.121 0.879 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.109 0.891 35 H 0.112 0.888 36 H 0.113 0.887 37 H 0.412 0.588 38 H -0.012 1.012 39 H -0.013 1.013 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.528 7.513 -22.775 24.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.322 5.322 3 C -0.025 4.025 4 H 0.057 0.943 5 C -0.170 4.170 6 C -0.024 4.024 7 O -0.305 6.305 8 C -0.033 4.033 9 C -0.006 4.006 10 H 0.110 0.890 11 O -0.299 6.299 12 C -0.024 4.024 13 C 0.281 3.719 14 O -0.474 6.474 15 N -0.354 5.354 16 C 0.144 3.856 17 C -0.595 4.595 18 H 0.105 0.895 19 C -0.197 4.197 20 N -0.571 5.571 21 Si 0.809 3.191 22 H -0.213 1.213 23 H -0.185 1.185 24 H -0.186 1.186 25 H 0.031 0.969 26 H 0.097 0.903 27 H 0.093 0.907 28 H 0.161 0.839 29 H 0.099 0.901 30 H 0.109 0.891 31 H 0.139 0.861 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.127 0.873 35 H 0.129 0.871 36 H 0.131 0.869 37 H 0.248 0.752 38 H 0.005 0.995 39 H 0.005 0.995 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.281 7.670 -22.850 24.326 hybrid contribution 0.245 -0.380 1.810 1.866 sum -3.036 7.290 -21.040 22.473 Atomic orbital electron populations 1.22276 0.87039 1.02536 1.00410 1.60600 1.08737 1.13008 1.49841 1.21750 0.93530 0.90521 0.96655 0.94251 1.22193 1.03157 0.97074 0.94569 1.22870 0.83890 0.95715 0.99927 1.87942 1.30101 1.87085 1.25405 1.23031 1.03073 0.93546 0.83694 1.23108 0.98153 0.97225 0.82082 0.89014 1.88010 1.37597 1.76872 1.27389 1.22363 0.89666 0.99890 0.90439 1.21150 0.83316 0.77757 0.89703 1.90665 1.29821 1.56436 1.70527 1.46066 1.18314 1.57450 1.13533 1.18556 0.96433 0.93231 0.77347 1.21599 1.01229 1.38716 0.97931 0.89472 1.26092 1.00458 0.96442 0.96673 1.70139 1.33029 1.46809 1.07087 0.85187 0.78001 0.78931 0.76983 1.21257 1.18545 1.18559 0.96894 0.90345 0.90684 0.83920 0.90111 0.89097 0.86087 0.92642 0.92876 0.87278 0.87077 0.86949 0.75194 0.99454 0.99476 0.92238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.50 127.69 1.34 1.85 16 2 N -0.69 -14.94 6.67 -513.99 -3.43 -18.36 16 3 C 0.09 1.75 2.28 45.03 0.10 1.86 16 4 H 0.04 0.92 7.80 -2.38 -0.02 0.91 16 5 C -0.13 -1.97 5.63 30.68 0.17 -1.80 16 6 C 0.05 0.74 6.84 72.01 0.49 1.23 16 7 O -0.39 -7.39 10.76 -148.98 -1.60 -8.99 16 8 C 0.04 0.87 6.47 72.01 0.47 1.34 16 9 C 0.05 1.11 2.31 30.68 0.07 1.18 16 10 H 0.09 1.73 7.79 -2.39 -0.02 1.71 16 11 O -0.38 -10.85 8.82 -129.94 -1.15 -12.00 16 12 C 0.06 1.44 6.23 71.24 0.44 1.88 16 13 C 0.49 19.72 7.91 87.66 0.69 20.41 16 14 O -0.59 -30.63 16.50 16.01 0.26 -30.36 16 15 N -0.70 -28.90 5.55 -466.78 -2.59 -31.49 16 16 C 0.27 14.60 5.43 85.63 0.46 15.06 16 17 C -0.56 -29.91 9.28 25.60 0.24 -29.67 16 18 H 0.09 4.16 7.60 -2.91 -0.02 4.13 16 19 C 0.00 0.16 5.46 84.66 0.46 0.63 16 20 N -0.93 -56.23 13.29 21.45 0.28 -55.95 16 21 Si 0.99 41.83 29.54 68.60 2.03 43.85 16 22 H -0.29 -12.16 7.11 99.48 0.71 -11.46 16 23 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 24 H -0.26 -10.44 7.11 99.48 0.71 -9.74 16 25 H 0.01 0.27 8.06 -2.39 -0.02 0.25 16 26 H 0.08 1.20 7.54 -2.39 -0.02 1.18 16 27 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.34 8.53 7.86 -89.69 -0.71 7.83 16 29 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.09 1.13 7.58 -2.39 -0.02 1.11 16 31 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.11 1.89 7.94 -2.39 -0.02 1.87 16 35 H 0.11 2.14 7.94 -2.39 -0.02 2.12 16 36 H 0.11 2.20 8.09 -2.39 -0.02 2.18 16 37 H 0.41 13.39 8.32 -92.71 -0.77 12.62 16 38 H -0.01 -0.77 8.14 -2.38 -0.02 -0.79 16 39 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 40 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -74.37 332.61 -1.68 -76.05 By element: Atomic # 1 Polarization: 23.71 SS G_CDS: -0.43 Total: 23.28 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: 4.95 Total: 13.97 kcal Atomic # 7 Polarization: -100.06 SS G_CDS: -5.73 Total: -105.80 kcal Atomic # 8 Polarization: -48.87 SS G_CDS: -2.49 Total: -51.35 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.85 kcal Total: -74.37 -1.68 -76.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686578350.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.615 kcal (2) G-P(sol) polarization free energy of solvation -74.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds