Wall clock time and date at job start Mon Mar 30 2020 05:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46900 * 111.00095 * 2 1 4 4 H 1.09008 * 109.54427 * 325.17768 * 3 2 1 5 5 C 1.53180 * 109.61676 * 85.39777 * 3 2 1 6 6 C 1.53093 * 109.16247 * 176.89355 * 5 3 2 7 7 O 1.42904 * 109.41596 * 302.38875 * 6 5 3 8 8 C 1.42909 * 114.09378 * 61.15813 * 7 6 5 9 9 C 1.53089 * 109.41823 * 298.84195 * 8 7 6 10 10 H 1.09000 * 109.57686 * 297.67530 * 9 8 7 11 11 O 1.42902 * 109.52153 * 177.51172 * 9 8 7 12 12 C 1.42897 * 113.99442 * 90.31706 * 11 9 8 13 13 C 1.50707 * 109.47024 * 179.97438 * 12 11 9 14 14 O 1.21281 * 119.99523 * 0.02562 * 13 12 11 15 15 N 1.34773 * 119.99914 * 179.97438 * 13 12 11 16 16 C 1.46506 * 119.99778 * 179.97438 * 15 13 12 17 17 C 1.50696 * 109.46871 * 179.97438 * 16 15 13 18 18 H 1.07999 * 120.00319 * 0.02562 * 17 16 15 19 19 C 1.37885 * 119.99717 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99913 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 119.99766 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47353 * 269.99586 * 21 19 17 23 23 H 1.48501 * 109.47293 * 30.00037 * 21 19 17 24 24 H 1.48504 * 109.46680 * 149.99835 * 21 19 17 25 25 H 1.09010 * 109.47237 * 59.99938 * 1 2 3 26 26 H 1.08998 * 109.47370 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47395 * 300.00103 * 1 2 3 28 28 H 1.00898 * 110.99782 * 236.04711 * 2 1 3 29 29 H 1.09000 * 109.51954 * 296.79657 * 5 3 2 30 30 H 1.08991 * 109.51888 * 56.92132 * 5 3 2 31 31 H 1.08995 * 109.48056 * 62.37719 * 6 5 3 32 32 H 1.09002 * 109.48047 * 182.41029 * 6 5 3 33 33 H 1.09002 * 109.47740 * 178.85753 * 8 7 6 34 34 H 1.09006 * 109.47953 * 58.82613 * 8 7 6 35 35 H 1.09005 * 109.47312 * 59.99934 * 12 11 9 36 36 H 1.09002 * 109.47500 * 299.99703 * 12 11 9 37 37 H 0.97000 * 120.00556 * 0.02562 * 15 13 12 38 38 H 1.09005 * 109.46943 * 60.00092 * 16 15 13 39 39 H 1.09002 * 109.47064 * 300.00355 * 16 15 13 40 40 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3388 2.0141 -0.5866 5 6 2.0717 1.8930 1.4382 6 6 2.6934 3.2920 1.4331 7 8 3.9853 3.2355 0.8249 8 6 3.9709 2.7997 -0.5360 9 6 3.4005 1.3810 -0.6101 10 1 4.0437 0.6992 -0.0537 11 8 3.3311 0.9649 -1.9754 12 6 4.5070 0.2995 -2.4406 13 6 4.3242 -0.0933 -3.8840 14 8 3.2889 0.1710 -4.4579 15 7 5.3115 -0.7374 -4.5374 16 6 5.1334 -1.1197 -5.9404 17 6 6.3741 -1.8202 -6.4314 18 1 7.2113 -1.9663 -5.7650 19 6 6.4404 -2.2745 -7.7316 20 7 7.5230 -2.8862 -8.1600 21 14 4.9926 -2.0210 -8.8844 22 1 4.0734 -3.1833 -8.7878 23 1 4.2669 -0.7828 -8.5029 24 1 5.4867 -1.8953 -10.2792 25 1 -0.3634 0.5139 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8305 -0.5261 -0.7814 29 1 1.0684 1.9418 1.8616 30 1 2.6874 1.2219 2.0369 31 1 2.0551 3.9714 0.8684 32 1 2.7895 3.6508 2.4579 33 1 4.9872 2.8039 -0.9298 34 1 3.3492 3.4727 -1.1266 35 1 4.6806 -0.5938 -1.8405 36 1 5.3626 0.9690 -2.3515 37 1 6.1396 -0.9484 -4.0786 38 1 4.9589 -0.2269 -6.5410 39 1 4.2783 -1.7899 -6.0287 40 1 7.5694 -3.2061 -9.0745 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686578351.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:15 Heat of formation + Delta-G solvation = -128.163800 kcal Electronic energy + Delta-G solvation = -21252.303750 eV Core-core repulsion = 17874.160508 eV Total energy + Delta-G solvation = -3378.143242 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.23372 -39.00756 -37.26410 -36.04856 -34.33685 -32.41826 -31.70969 -30.73586 -28.90722 -26.72080 -26.12212 -23.68455 -23.01978 -22.06234 -20.67882 -19.99233 -17.64162 -17.22362 -16.84765 -16.58261 -16.00491 -15.73758 -15.41132 -15.15247 -15.09034 -14.50435 -14.20769 -13.82539 -13.75541 -13.37683 -13.08548 -13.01444 -12.49199 -12.40319 -12.16824 -12.03446 -11.77348 -11.56743 -11.22902 -11.06091 -10.80849 -10.69602 -10.31623 -10.00340 -9.54297 -9.51870 -9.24568 -8.81700 -8.72073 -8.23353 -6.24869 -4.27621 2.95723 3.10346 3.24876 3.31777 3.39796 3.60175 3.87645 4.17287 4.30493 4.37495 4.52655 4.76113 4.79294 4.88290 5.04371 5.10014 5.10623 5.16832 5.19954 5.26663 5.29257 5.36438 5.37464 5.44614 5.53521 5.65539 5.70396 5.88104 6.64027 6.72799 6.76310 6.99066 7.01917 7.13885 7.16145 7.33136 8.07697 8.43706 8.70393 8.84466 9.34760 10.86973 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.032037 B = 0.003426 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.772427 B = 8171.600896 C = 8654.272726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.688 5.688 3 C 0.089 3.911 4 H 0.055 0.945 5 C -0.141 4.141 6 C 0.057 3.943 7 O -0.376 6.376 8 C 0.042 3.958 9 C 0.051 3.949 10 H 0.081 0.919 11 O -0.353 6.353 12 C 0.042 3.958 13 C 0.501 3.499 14 O -0.539 6.539 15 N -0.703 5.703 16 C 0.222 3.778 17 C -0.545 4.545 18 H 0.080 0.920 19 C 0.078 3.922 20 N -0.891 5.891 21 Si 0.877 3.123 22 H -0.273 1.273 23 H -0.261 1.261 24 H -0.283 1.283 25 H 0.025 0.975 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.353 0.647 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.051 0.949 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.062 0.938 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.397 0.603 38 H 0.026 0.974 39 H 0.022 0.978 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.528 9.742 19.882 24.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.320 5.320 3 C -0.021 4.021 4 H 0.073 0.927 5 C -0.180 4.180 6 C -0.021 4.021 7 O -0.294 6.294 8 C -0.036 4.036 9 C -0.008 4.008 10 H 0.099 0.901 11 O -0.271 6.271 12 C -0.038 4.038 13 C 0.285 3.715 14 O -0.417 6.417 15 N -0.353 5.353 16 C 0.100 3.900 17 C -0.583 4.583 18 H 0.098 0.902 19 C -0.126 4.126 20 N -0.528 5.528 21 Si 0.703 3.297 22 H -0.198 1.198 23 H -0.185 1.185 24 H -0.208 1.208 25 H 0.044 0.956 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.172 0.828 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.070 0.930 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.231 0.769 38 H 0.044 0.956 39 H 0.040 0.960 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.140 9.832 19.927 24.425 hybrid contribution -0.439 0.000 -1.419 1.485 sum -10.579 9.832 18.508 23.476 Atomic orbital electron populations 1.22221 0.87706 1.02024 1.00251 1.60490 1.08045 1.12898 1.50570 1.21648 0.94067 0.90944 0.95463 0.92701 1.22249 1.02330 0.97058 0.96316 1.22674 0.84711 0.95850 0.98819 1.87964 1.28723 1.87151 1.25586 1.23067 1.02762 0.94226 0.83501 1.22991 0.97560 0.96672 0.83596 0.90104 1.88023 1.37090 1.76420 1.25539 1.22406 0.88957 0.97795 0.94636 1.20097 0.84609 0.79268 0.87571 1.90683 1.27690 1.54639 1.68659 1.46090 1.17397 1.57187 1.14666 1.19516 0.97862 0.95603 0.76985 1.21075 1.00542 1.38497 0.98189 0.90165 1.24793 0.96038 0.93985 0.97765 1.69878 1.27441 1.37943 1.17581 0.86818 0.82789 0.79869 0.80231 1.19805 1.18504 1.20838 0.95630 0.91304 0.91973 0.82764 0.90436 0.89975 0.93022 0.88338 0.88222 0.92004 0.90138 0.90380 0.76895 0.95598 0.96049 0.92199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.50 60.06 0.63 0.89 16 2 N -0.69 -7.43 6.67 -113.80 -0.76 -8.19 16 3 C 0.09 0.92 2.28 -67.53 -0.15 0.77 16 4 H 0.06 0.62 7.80 -51.92 -0.41 0.21 16 5 C -0.14 -1.16 5.63 -26.59 -0.15 -1.31 16 6 C 0.06 0.45 6.84 37.21 0.25 0.70 16 7 O -0.38 -3.90 10.77 -35.23 -0.38 -4.28 16 8 C 0.04 0.43 6.47 37.20 0.24 0.67 16 9 C 0.05 0.56 2.31 -26.59 -0.06 0.49 16 10 H 0.08 0.84 7.79 -51.93 -0.40 0.44 16 11 O -0.35 -4.96 8.82 -55.14 -0.49 -5.45 16 12 C 0.04 0.56 6.23 36.01 0.22 0.78 16 13 C 0.50 9.42 7.91 -10.98 -0.09 9.33 16 14 O -0.54 -12.55 16.50 -14.36 -0.24 -12.79 16 15 N -0.70 -13.83 5.55 -61.47 -0.34 -14.17 16 16 C 0.22 5.40 4.50 -5.19 -0.02 5.38 16 17 C -0.55 -14.76 9.83 -34.44 -0.34 -15.10 16 18 H 0.08 2.25 7.84 -52.49 -0.41 1.83 16 19 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 20 N -0.89 -26.25 13.96 55.43 0.77 -25.48 16 21 Si 0.88 21.30 27.47 -169.99 -4.67 16.64 16 22 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H 0.03 0.25 8.06 -51.92 -0.42 -0.16 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.50 7.54 -51.93 -0.39 0.11 16 28 H 0.35 4.26 7.86 -39.29 -0.31 3.95 16 29 H 0.08 0.55 7.58 -51.93 -0.39 0.16 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.10 0.94 7.96 -51.93 -0.41 0.53 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.88 8.09 -51.93 -0.42 0.46 16 36 H 0.08 0.84 7.96 -51.93 -0.41 0.43 16 37 H 0.40 6.69 8.32 -40.82 -0.34 6.35 16 38 H 0.03 0.67 7.20 -51.93 -0.37 0.29 16 39 H 0.02 0.55 7.57 -51.93 -0.39 0.15 16 40 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 329.04 15.07 4.96 4.96 Total: -1.00 -32.76 329.04 -7.07 -39.83 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -6.37 Total: 4.22 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: 0.44 Total: 4.70 kcal Atomic # 7 Polarization: -47.51 SS G_CDS: -0.33 Total: -47.83 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -1.10 Total: -22.51 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.67 Total: 16.64 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.76 -7.07 -39.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686578351.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.338 kcal (2) G-P(sol) polarization free energy of solvation -32.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds