Wall clock time and date at job start Mon Mar 30 2020 04:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46890 * 109.47199 * 2 1 4 4 C 1.46898 * 111.00195 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.54445 * 34.82042 * 4 3 2 6 6 C 1.53178 * 109.54474 * 274.55539 * 4 3 2 7 7 C 1.53087 * 109.16539 * 183.14699 * 6 4 3 8 8 O 1.42904 * 109.41424 * 57.61276 * 7 6 4 9 9 C 1.42908 * 114.09641 * 298.83880 * 8 7 6 10 10 C 1.53096 * 109.41344 * 61.15716 * 9 8 7 11 11 H 1.08993 * 109.57459 * 182.45383 * 10 9 8 12 12 O 1.42905 * 109.52037 * 62.29646 * 10 9 8 13 13 C 1.42899 * 113.99778 * 90.31658 * 12 10 9 14 14 C 1.50699 * 109.46785 * 179.97438 * 13 12 10 15 15 O 1.21289 * 120.00453 * 359.97438 * 14 13 12 16 16 N 1.34784 * 119.99728 * 179.97438 * 14 13 12 17 17 C 1.37100 * 119.99817 * 179.97438 * 16 14 13 18 18 H 1.07999 * 119.99896 * 0.02562 * 17 16 14 19 19 C 1.38951 * 119.99883 * 180.02562 * 17 16 14 20 20 N 1.31415 * 119.99775 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00067 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47281 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47332 * 120.00083 * 21 19 17 24 24 H 1.48496 * 109.47548 * 240.00222 * 21 19 17 25 25 H 1.09002 * 109.47282 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46547 * 299.99759 * 1 2 3 27 27 H 1.08999 * 109.47381 * 59.99829 * 1 2 3 28 28 H 1.09002 * 109.46613 * 239.99743 * 2 1 3 29 29 H 1.08995 * 109.46935 * 120.00391 * 2 1 3 30 30 H 1.00902 * 111.00562 * 56.04907 * 3 2 1 31 31 H 1.08997 * 109.51980 * 303.05916 * 6 4 3 32 32 H 1.09008 * 109.51966 * 63.24439 * 6 4 3 33 33 H 1.09003 * 109.48230 * 177.59404 * 7 6 4 34 34 H 1.08998 * 109.48589 * 297.61707 * 7 6 4 35 35 H 1.08994 * 109.48008 * 301.17760 * 9 8 7 36 36 H 1.09000 * 109.47863 * 181.13847 * 9 8 7 37 37 H 1.08997 * 109.47171 * 299.99768 * 13 12 10 38 38 H 1.08997 * 109.47442 * 59.99964 * 13 12 10 39 39 H 0.96996 * 119.99888 * 0.02562 * 16 14 13 40 40 H 0.96999 * 119.99251 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4881 1.4241 -0.0006 5 1 3.8749 0.5909 -0.5874 6 6 4.0041 1.3230 1.4381 7 6 5.5302 1.4436 1.4344 8 8 5.9074 2.6805 0.8261 9 6 5.4930 2.8114 -0.5353 10 6 3.9653 2.7456 -0.6107 11 1 3.6484 2.8015 -1.6521 12 8 3.4037 3.8386 0.1187 13 6 3.1904 5.0132 -0.6668 14 6 2.5980 6.0954 0.1985 15 8 2.3795 5.8818 1.3723 16 7 2.3111 7.3008 -0.3319 17 6 1.7717 8.2852 0.4552 18 1 1.5771 8.0950 1.5003 19 6 1.4753 9.5277 -0.0918 20 7 1.7117 9.7590 -1.3636 21 14 0.7410 10.8693 0.9808 22 1 0.5740 10.3599 2.3657 23 1 1.6476 12.0454 0.9924 24 1 -0.5817 11.2692 0.4372 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6443 1.9013 0.7814 31 1 3.5764 2.1279 2.0358 32 1 3.7158 0.3608 1.8616 33 1 5.8996 1.4152 2.4595 34 1 5.9590 0.6153 0.8705 35 1 5.9212 2.0011 -1.1252 36 1 5.8355 3.7684 -0.9290 37 1 4.1414 5.3543 -1.0758 38 1 2.5049 4.7850 -1.4829 39 1 2.4855 7.4715 -1.2707 40 1 1.5044 10.6262 -1.7455 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686580509.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:22 Heat of formation + Delta-G solvation = -129.629876 kcal Electronic energy + Delta-G solvation = -21715.951741 eV Core-core repulsion = 18337.744925 eV Total energy + Delta-G solvation = -3378.206815 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.90753 -38.13278 -36.58209 -36.18445 -33.83744 -32.42202 -31.20435 -30.47243 -28.74086 -27.39342 -24.42621 -23.87376 -23.35352 -22.06059 -20.12522 -19.39920 -17.90634 -16.77132 -16.44184 -15.89065 -15.78376 -15.66440 -15.14580 -14.71155 -14.57085 -14.30033 -14.10444 -13.79484 -13.55690 -13.01696 -12.73024 -12.36137 -12.17149 -11.91678 -11.79030 -11.58687 -11.47084 -11.32860 -11.30458 -11.06368 -10.69273 -10.53711 -10.30857 -10.19180 -9.95672 -9.48295 -8.91624 -8.38786 -8.27333 -7.93122 -6.38175 -3.78831 3.19677 3.29772 3.37074 3.67977 3.93126 3.94552 4.09893 4.28874 4.68631 4.71420 4.87926 4.96587 5.07915 5.15830 5.16612 5.26249 5.28376 5.30385 5.39977 5.40805 5.55224 5.59828 5.70664 5.73924 5.75957 5.88946 5.95776 6.00646 6.09580 6.22556 6.29438 6.97098 7.17399 7.39356 7.57677 7.59292 8.10166 8.65741 9.21948 9.56912 10.09171 10.79896 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.021574 B = 0.004213 C = 0.003821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.536695 B = 6643.896208 C = 7325.739402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 N -0.680 5.680 4 C 0.096 3.904 5 H 0.084 0.916 6 C -0.184 4.184 7 C 0.067 3.933 8 O -0.367 6.367 9 C 0.039 3.961 10 C 0.062 3.938 11 H 0.074 0.926 12 O -0.334 6.334 13 C 0.055 3.945 14 C 0.447 3.553 15 O -0.575 6.575 16 N -0.563 5.563 17 C -0.296 4.296 18 H 0.104 0.896 19 C 0.022 3.978 20 N -0.903 5.903 21 Si 0.930 3.070 22 H -0.268 1.268 23 H -0.282 1.282 24 H -0.282 1.282 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.026 0.974 30 H 0.356 0.644 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.092 0.908 34 H 0.044 0.956 35 H 0.055 0.945 36 H 0.098 0.902 37 H 0.059 0.941 38 H 0.064 0.936 39 H 0.392 0.608 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.505 -18.743 -1.983 19.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.075 4.075 3 N -0.312 5.312 4 C -0.015 4.015 5 H 0.102 0.898 6 C -0.223 4.223 7 C -0.011 4.011 8 O -0.285 6.285 9 C -0.038 4.038 10 C 0.002 3.998 11 H 0.092 0.908 12 O -0.251 6.251 13 C -0.025 4.025 14 C 0.232 3.768 15 O -0.458 6.458 16 N -0.201 5.201 17 C -0.426 4.426 18 H 0.122 0.878 19 C -0.180 4.180 20 N -0.544 5.544 21 Si 0.757 3.243 22 H -0.192 1.192 23 H -0.208 1.208 24 H -0.208 1.208 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.044 0.956 30 H 0.176 0.824 31 H 0.108 0.892 32 H 0.084 0.916 33 H 0.110 0.890 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.116 0.884 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.226 0.774 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.298 -18.523 -1.672 19.089 hybrid contribution -0.152 0.367 0.261 0.475 sum 4.146 -18.157 -1.412 18.677 Atomic orbital electron populations 1.21766 0.94926 1.01389 1.02823 1.21940 0.95839 0.89835 0.99915 1.60486 1.06383 1.12791 1.51520 1.21615 0.88656 0.95901 0.95320 0.89829 1.22883 0.97751 1.02892 0.98799 1.22467 0.93661 0.86405 0.98545 1.88015 1.77510 1.37516 1.25485 1.23155 0.94315 1.02401 0.83978 1.22794 0.92556 0.87850 0.96566 0.90841 1.88078 1.82511 1.20016 1.34510 1.22197 0.99482 0.86841 0.94010 1.19549 0.85020 0.83597 0.88648 1.90535 1.57299 1.81110 1.16843 1.41757 1.55927 1.10024 1.12434 1.19750 1.37049 0.90579 0.95210 0.87837 1.25251 0.97911 0.98540 0.96249 1.69625 1.48629 1.24406 1.11767 0.85789 0.78370 0.80144 0.79979 1.19209 1.20760 1.20765 0.92450 0.92620 0.91710 0.91443 0.95617 0.82424 0.89227 0.91575 0.89023 0.93754 0.92704 0.88431 0.92290 0.91816 0.77438 0.91950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 10.17 37.16 0.38 -1.05 16 2 C 0.05 0.53 6.21 -3.83 -0.02 0.51 16 3 N -0.68 -8.54 6.07 -106.54 -0.65 -9.19 16 4 C 0.10 1.14 2.34 -67.53 -0.16 0.98 16 5 H 0.08 0.83 7.80 -51.93 -0.41 0.43 16 6 C -0.18 -2.19 5.24 -26.59 -0.14 -2.33 16 7 C 0.07 0.77 6.84 37.20 0.25 1.02 16 8 O -0.37 -5.44 10.70 -42.72 -0.46 -5.90 16 9 C 0.04 0.49 6.49 37.21 0.24 0.73 16 10 C 0.06 0.85 2.64 -26.59 -0.07 0.78 16 11 H 0.07 0.92 7.79 -51.93 -0.40 0.52 16 12 O -0.33 -6.19 8.72 -60.61 -0.53 -6.72 16 13 C 0.06 1.04 6.23 36.01 0.22 1.27 16 14 C 0.45 11.18 7.86 -10.98 -0.09 11.09 16 15 O -0.57 -16.70 16.07 -14.36 -0.23 -16.94 16 16 N -0.56 -14.72 5.29 -10.96 -0.06 -14.78 16 17 C -0.30 -8.46 9.68 -14.93 -0.14 -8.61 16 18 H 0.10 3.11 7.16 -52.49 -0.38 2.73 16 19 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 20 N -0.90 -24.85 13.05 55.50 0.72 -24.12 16 21 Si 0.93 21.36 29.55 -169.99 -5.02 16.33 16 22 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.61 8.06 -51.93 -0.42 0.20 16 29 H 0.03 0.24 7.54 -51.93 -0.39 -0.15 16 30 H 0.36 5.10 8.41 -39.29 -0.33 4.77 16 31 H 0.09 1.36 7.77 -51.93 -0.40 0.96 16 32 H 0.07 0.66 7.58 -51.92 -0.39 0.26 16 33 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.10 1.21 7.86 -51.93 -0.41 0.81 16 37 H 0.06 0.99 7.86 -51.93 -0.41 0.58 16 38 H 0.06 1.08 8.09 -51.93 -0.42 0.66 16 39 H 0.39 9.69 7.90 -40.82 -0.32 9.37 16 40 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 330.94 15.07 4.99 4.99 Total: -1.00 -33.05 330.94 -7.21 -40.25 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -6.35 Total: 11.18 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: 0.38 Total: 4.89 kcal Atomic # 7 Polarization: -48.11 SS G_CDS: 0.02 Total: -48.09 kcal Atomic # 8 Polarization: -28.34 SS G_CDS: -1.22 Total: -29.56 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.05 -7.21 -40.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686580509.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.376 kcal (2) G-P(sol) polarization free energy of solvation -33.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds