Wall clock time and date at job start Mon Mar 30 2020 04:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46890 * 109.47199 * 2 1 4 4 C 1.46898 * 111.00195 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.54445 * 34.82042 * 4 3 2 6 6 C 1.53178 * 109.54474 * 274.55539 * 4 3 2 7 7 C 1.53087 * 109.16539 * 183.14699 * 6 4 3 8 8 O 1.42904 * 109.41424 * 57.61276 * 7 6 4 9 9 C 1.42908 * 114.09641 * 298.83880 * 8 7 6 10 10 C 1.53096 * 109.41344 * 61.15716 * 9 8 7 11 11 H 1.08993 * 109.57459 * 182.45383 * 10 9 8 12 12 O 1.42905 * 109.52037 * 62.29646 * 10 9 8 13 13 C 1.42899 * 113.99778 * 90.31658 * 12 10 9 14 14 C 1.50699 * 109.46785 * 179.97438 * 13 12 10 15 15 O 1.21289 * 120.00453 * 359.97438 * 14 13 12 16 16 N 1.34784 * 119.99728 * 179.97438 * 14 13 12 17 17 C 1.37100 * 119.99817 * 179.97438 * 16 14 13 18 18 H 1.07999 * 119.99896 * 0.02562 * 17 16 14 19 19 C 1.38951 * 119.99883 * 180.02562 * 17 16 14 20 20 N 1.31415 * 119.99775 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00067 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47281 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47332 * 120.00083 * 21 19 17 24 24 H 1.48496 * 109.47548 * 240.00222 * 21 19 17 25 25 H 1.09002 * 109.47282 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46547 * 299.99759 * 1 2 3 27 27 H 1.08999 * 109.47381 * 59.99829 * 1 2 3 28 28 H 1.09002 * 109.46613 * 239.99743 * 2 1 3 29 29 H 1.08995 * 109.46935 * 120.00391 * 2 1 3 30 30 H 1.00902 * 111.00562 * 56.04907 * 3 2 1 31 31 H 1.08997 * 109.51980 * 303.05916 * 6 4 3 32 32 H 1.09008 * 109.51966 * 63.24439 * 6 4 3 33 33 H 1.09003 * 109.48230 * 177.59404 * 7 6 4 34 34 H 1.08998 * 109.48589 * 297.61707 * 7 6 4 35 35 H 1.08994 * 109.48008 * 301.17760 * 9 8 7 36 36 H 1.09000 * 109.47863 * 181.13847 * 9 8 7 37 37 H 1.08997 * 109.47171 * 299.99768 * 13 12 10 38 38 H 1.08997 * 109.47442 * 59.99964 * 13 12 10 39 39 H 0.96996 * 119.99888 * 0.02562 * 16 14 13 40 40 H 0.96999 * 119.99251 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4881 1.4241 -0.0006 5 1 3.8749 0.5909 -0.5874 6 6 4.0041 1.3230 1.4381 7 6 5.5302 1.4436 1.4344 8 8 5.9074 2.6805 0.8261 9 6 5.4930 2.8114 -0.5353 10 6 3.9653 2.7456 -0.6107 11 1 3.6484 2.8015 -1.6521 12 8 3.4037 3.8386 0.1187 13 6 3.1904 5.0132 -0.6668 14 6 2.5980 6.0954 0.1985 15 8 2.3795 5.8818 1.3723 16 7 2.3111 7.3008 -0.3319 17 6 1.7717 8.2852 0.4552 18 1 1.5771 8.0950 1.5003 19 6 1.4753 9.5277 -0.0918 20 7 1.7117 9.7590 -1.3636 21 14 0.7410 10.8693 0.9808 22 1 0.5740 10.3599 2.3657 23 1 1.6476 12.0454 0.9924 24 1 -0.5817 11.2692 0.4372 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6443 1.9013 0.7814 31 1 3.5764 2.1279 2.0358 32 1 3.7158 0.3608 1.8616 33 1 5.8996 1.4152 2.4595 34 1 5.9590 0.6153 0.8705 35 1 5.9212 2.0011 -1.1252 36 1 5.8355 3.7684 -0.9290 37 1 4.1414 5.3543 -1.0758 38 1 2.5049 4.7850 -1.4829 39 1 2.4855 7.4715 -1.2707 40 1 1.5044 10.6262 -1.7455 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686580509.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:22 Heat of formation + Delta-G solvation = -155.018522 kcal Electronic energy + Delta-G solvation = -21717.052675 eV Core-core repulsion = 18337.744925 eV Total energy + Delta-G solvation = -3379.307750 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.98014 -40.00070 -37.75018 -37.30587 -35.94143 -33.38499 -33.25793 -31.49547 -29.69760 -29.00973 -26.32852 -24.85383 -24.32300 -22.85890 -21.34397 -21.12552 -19.98967 -18.08077 -17.63246 -17.25316 -17.02193 -16.75693 -16.56466 -16.13421 -15.81799 -15.64894 -15.56066 -15.18246 -14.64734 -14.49423 -14.04138 -13.60996 -13.53524 -13.37763 -12.92259 -12.74705 -12.70187 -12.64730 -12.42986 -12.26866 -12.16104 -12.11422 -11.67110 -11.58815 -11.51240 -11.02036 -10.32700 -10.06803 -10.01618 -9.29486 -8.48299 -5.97585 1.36478 1.41873 1.56411 2.00069 2.21639 2.51986 2.97513 3.17859 3.19455 3.51760 3.78638 3.82888 3.94950 4.12703 4.17003 4.25222 4.35003 4.38633 4.40626 4.45609 4.50494 4.53624 4.59956 4.66192 4.72851 4.85975 4.96139 5.03251 5.12473 5.23833 5.32757 5.39897 5.91885 6.09113 6.21580 6.35479 6.43129 6.60674 7.10626 7.51156 8.07538 8.69505 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.021574 B = 0.004213 C = 0.003821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.536695 B = 6643.896208 C = 7325.739402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 N -0.694 5.694 4 C 0.097 3.903 5 H 0.114 0.886 6 C -0.177 4.177 7 C 0.063 3.937 8 O -0.402 6.402 9 C 0.037 3.963 10 C 0.053 3.947 11 H 0.088 0.912 12 O -0.364 6.364 13 C 0.070 3.930 14 C 0.438 3.562 15 O -0.624 6.624 16 N -0.568 5.568 17 C -0.336 4.336 18 H 0.077 0.923 19 C -0.010 4.010 20 N -0.918 5.918 21 Si 0.995 3.005 22 H -0.275 1.275 23 H -0.269 1.269 24 H -0.268 1.268 25 H 0.077 0.923 26 H 0.043 0.957 27 H 0.053 0.947 28 H 0.082 0.918 29 H 0.034 0.966 30 H 0.340 0.660 31 H 0.046 0.954 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.398 0.602 40 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.026 -19.942 -3.268 20.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.074 4.074 3 N -0.324 5.324 4 C -0.013 4.013 5 H 0.132 0.868 6 C -0.216 4.216 7 C -0.014 4.014 8 O -0.321 6.321 9 C -0.040 4.040 10 C -0.005 4.005 11 H 0.106 0.894 12 O -0.282 6.282 13 C -0.010 4.010 14 C 0.226 3.774 15 O -0.511 6.511 16 N -0.206 5.206 17 C -0.465 4.465 18 H 0.095 0.905 19 C -0.210 4.210 20 N -0.559 5.559 21 Si 0.818 3.182 22 H -0.200 1.200 23 H -0.194 1.194 24 H -0.193 1.193 25 H 0.096 0.904 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.101 0.899 29 H 0.053 0.947 30 H 0.158 0.842 31 H 0.064 0.936 32 H 0.105 0.895 33 H 0.112 0.888 34 H 0.095 0.905 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.102 0.898 38 H 0.105 0.895 39 H 0.233 0.767 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.833 -19.739 -3.009 20.544 hybrid contribution -0.305 0.677 0.643 0.982 sum 4.528 -19.063 -2.366 19.735 Atomic orbital electron populations 1.21759 0.94931 1.02338 1.01696 1.22016 0.95862 0.88556 1.00955 1.60529 1.06894 1.14203 1.50765 1.21708 0.88363 0.95816 0.95419 0.86782 1.22788 0.98091 1.02246 0.98487 1.22652 0.93229 0.86316 0.99229 1.87966 1.77909 1.39402 1.26818 1.23269 0.93400 1.03717 0.83595 1.23158 0.93391 0.86944 0.97047 0.89369 1.88057 1.83344 1.20791 1.36019 1.21979 1.00644 0.85629 0.92738 1.20647 0.83769 0.84290 0.88731 1.90495 1.59136 1.82072 1.19347 1.41800 1.55979 1.10313 1.12484 1.19692 1.39702 0.92359 0.94743 0.90521 1.26047 0.97426 0.99922 0.97593 1.69676 1.48206 1.25340 1.12677 0.84851 0.78206 0.77317 0.77816 1.19977 1.19378 1.19321 0.90450 0.93796 0.92775 0.89949 0.94744 0.84225 0.93558 0.89507 0.88782 0.90505 0.89019 0.88894 0.89774 0.89494 0.76741 0.91136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 10.17 71.98 0.73 -1.93 16 2 C 0.05 0.97 6.21 86.31 0.54 1.51 16 3 N -0.69 -16.69 6.07 -490.98 -2.98 -19.67 16 4 C 0.10 2.11 2.34 45.03 0.11 2.22 16 5 H 0.11 1.81 7.80 -2.39 -0.02 1.79 16 6 C -0.18 -4.03 5.24 30.68 0.16 -3.87 16 7 C 0.06 1.33 6.84 72.01 0.49 1.82 16 8 O -0.40 -11.46 10.70 -141.82 -1.52 -12.98 16 9 C 0.04 0.86 6.49 72.01 0.47 1.32 16 10 C 0.05 1.37 2.64 30.69 0.08 1.45 16 11 H 0.09 1.98 7.79 -2.39 -0.02 1.96 16 12 O -0.36 -13.52 8.72 -124.71 -1.09 -14.61 16 13 C 0.07 2.63 6.23 71.24 0.44 3.08 16 14 C 0.44 22.54 7.86 87.66 0.69 23.23 16 15 O -0.62 -37.98 16.07 15.98 0.26 -37.72 16 16 N -0.57 -30.38 5.29 -306.98 -1.62 -32.01 16 17 C -0.34 -19.72 9.68 84.04 0.81 -18.90 16 18 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 19 C -0.01 -0.54 5.50 84.93 0.47 -0.07 16 20 N -0.92 -50.04 13.05 21.66 0.28 -49.76 16 21 Si 0.99 43.68 29.55 68.60 2.03 45.71 16 22 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 23 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 24 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 25 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 27 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.08 1.24 8.06 -2.39 -0.02 1.22 16 29 H 0.03 0.56 7.54 -2.39 -0.02 0.54 16 30 H 0.34 9.97 8.41 -89.69 -0.75 9.21 16 31 H 0.05 1.46 7.77 -2.39 -0.02 1.44 16 32 H 0.09 1.57 7.58 -2.38 -0.02 1.55 16 33 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.09 2.16 7.86 -2.39 -0.02 2.14 16 37 H 0.08 2.72 7.86 -2.39 -0.02 2.70 16 38 H 0.09 2.85 8.09 -2.39 -0.02 2.83 16 39 H 0.40 19.91 7.90 -92.71 -0.73 19.18 16 40 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 Total: -1.00 -73.66 330.94 -0.10 -73.76 By element: Atomic # 1 Polarization: 37.87 SS G_CDS: -0.44 Total: 37.43 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: 4.99 Total: 9.85 kcal Atomic # 7 Polarization: -97.12 SS G_CDS: -4.32 Total: -101.44 kcal Atomic # 8 Polarization: -62.96 SS G_CDS: -2.35 Total: -65.31 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -73.66 -0.10 -73.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686580509.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.260 kcal (2) G-P(sol) polarization free energy of solvation -73.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds