Wall clock time and date at job start Mon Mar 30 2020 05:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.47093 * 269.99513 * 3 2 1 5 5 H 1.48495 * 109.46891 * 29.99921 * 3 2 1 6 6 H 1.48504 * 109.47189 * 149.99610 * 3 2 1 7 7 C 1.37877 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00248 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00001 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46886 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46886 * 180.02562 * 11 10 9 13 13 H 1.08993 * 109.46977 * 304.99148 * 12 11 10 14 14 N 1.46898 * 109.47357 * 64.99611 * 12 11 10 15 15 C 1.50703 * 109.46801 * 184.99548 * 12 11 10 16 16 O 1.21281 * 120.00407 * 259.99860 * 15 12 11 17 17 N 1.34781 * 119.99971 * 80.00207 * 15 12 11 18 18 C 1.46927 * 120.62992 * 180.02562 * 17 15 12 19 19 C 1.53193 * 108.77651 * 126.36498 * 18 17 15 20 20 C 1.53043 * 109.31133 * 54.63483 * 19 18 17 21 21 C 1.53044 * 109.53626 * 298.63459 * 20 19 18 22 22 H 1.09004 * 109.49680 * 301.41504 * 21 20 19 23 23 F 1.39905 * 109.49700 * 181.35324 * 21 20 19 24 24 C 1.46928 * 120.63118 * 359.71423 * 17 15 12 25 25 H 0.97000 * 119.99684 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 27 27 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 28 28 H 1.09001 * 109.47194 * 299.99742 * 10 9 7 29 29 H 1.08992 * 109.47399 * 59.99914 * 10 9 7 30 30 H 1.09001 * 109.47109 * 299.99380 * 11 10 9 31 31 H 1.09002 * 109.47508 * 59.99571 * 11 10 9 32 32 H 1.00909 * 110.99884 * 60.00223 * 14 12 11 33 33 H 1.00901 * 111.00193 * 183.94935 * 14 12 11 34 34 H 1.09006 * 109.58438 * 246.15249 * 18 17 15 35 35 H 1.09003 * 109.59086 * 6.57676 * 18 17 15 36 36 H 1.08998 * 109.49868 * 174.58185 * 19 18 17 37 37 H 1.08997 * 109.49514 * 294.68417 * 19 18 17 38 38 H 1.08996 * 109.45963 * 58.65253 * 20 19 18 39 39 H 1.09000 * 109.45898 * 178.62969 * 20 19 18 40 40 H 1.09006 * 109.58049 * 353.42065 * 24 17 15 41 41 H 1.08999 * 109.58297 * 113.84733 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5515 -2.6366 0.0022 12 6 6.0614 -4.0791 0.0015 13 1 5.6262 -4.6187 0.8425 14 7 5.6737 -4.7349 -1.2545 15 6 7.5632 -4.0810 0.1264 16 8 8.2536 -4.2333 -0.8591 17 7 8.1393 -3.9136 1.3334 18 6 9.6021 -3.9126 1.4710 19 6 10.0281 -2.6327 2.1971 20 6 9.2719 -2.5276 3.5234 21 6 7.7680 -2.4503 3.2504 22 1 7.5567 -1.5869 2.6195 23 9 7.0794 -2.3232 4.4616 24 6 7.3164 -3.7219 2.5354 25 1 -0.4850 0.8401 -0.0004 26 1 3.8745 -0.6801 0.8912 27 1 3.8752 -0.6804 -0.8888 28 1 3.6578 -3.1506 0.8907 29 1 3.6585 -3.1502 -0.8892 30 1 5.9155 -2.1226 -0.8873 31 1 5.9141 -2.1231 0.8927 32 1 6.0652 -4.2530 -2.0500 33 1 5.9427 -5.7074 -1.2528 34 1 9.9153 -4.7821 2.0490 35 1 10.0621 -3.9428 0.4833 36 1 11.1002 -2.6642 2.3911 37 1 9.7955 -1.7676 1.5761 38 1 9.4855 -3.4050 4.1337 39 1 9.5911 -1.6301 4.0533 40 1 6.2689 -3.6263 2.2496 41 1 7.4391 -4.5755 3.2021 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689452587.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:52 Heat of formation + Delta-G solvation = -106.635104 kcal Electronic energy + Delta-G solvation = -21787.576215 eV Core-core repulsion = 18422.739317 eV Total energy + Delta-G solvation = -3364.836898 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.164 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -47.89209 -40.59449 -37.64059 -35.96157 -33.44394 -33.09616 -31.55784 -30.95799 -28.40221 -26.46180 -24.85881 -23.39210 -22.13435 -21.11814 -20.04968 -19.17742 -17.70058 -16.74459 -16.68507 -16.27038 -15.87021 -15.80782 -15.41846 -14.90765 -14.46630 -14.37539 -14.05364 -13.70533 -13.34649 -13.18470 -12.91734 -12.83633 -12.55228 -11.96005 -11.78060 -11.69586 -11.48368 -11.39188 -11.23363 -10.90598 -10.84004 -10.71841 -10.32144 -9.89226 -9.65862 -9.50380 -9.13773 -9.02707 -8.66968 -8.48648 -5.99204 -3.96354 2.34987 2.62968 3.33603 3.40735 3.43924 4.03390 4.11908 4.19176 4.41557 4.45681 4.49353 4.58438 4.66354 4.87794 4.95438 5.06145 5.15382 5.23636 5.29164 5.34622 5.35101 5.39148 5.53366 5.59231 5.74667 5.83506 5.91918 6.13257 6.24474 6.62264 6.75025 6.92696 6.99532 7.12448 7.38894 7.43390 7.52652 7.85491 7.89056 8.60672 9.07274 9.63877 11.14521 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.017991 B = 0.004922 C = 0.004253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.956176 B = 5687.013215 C = 6581.316841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.879 3.121 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.267 1.267 7 C -0.516 4.516 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.092 4.092 11 C -0.109 4.109 12 C 0.075 3.925 13 H 0.103 0.897 14 N -0.810 5.810 15 C 0.487 3.513 16 O -0.545 6.545 17 N -0.609 5.609 18 C 0.104 3.896 19 C -0.132 4.132 20 C -0.146 4.146 21 C 0.077 3.923 22 H 0.091 0.909 23 F -0.203 7.203 24 C 0.078 3.922 25 H 0.262 0.738 26 H 0.012 0.988 27 H 0.009 0.991 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.350 0.650 33 H 0.340 0.660 34 H 0.069 0.931 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.108 0.892 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.449 -8.161 6.494 23.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.554 4.554 8 H 0.090 0.910 9 C -0.053 4.053 10 C -0.130 4.130 11 C -0.147 4.147 12 C -0.040 4.040 13 H 0.121 0.879 14 N -0.338 5.338 15 C 0.275 3.725 16 O -0.422 6.422 17 N -0.344 5.344 18 C -0.018 4.018 19 C -0.170 4.170 20 C -0.184 4.184 21 C 0.040 3.960 22 H 0.109 0.891 23 F -0.184 7.184 24 C -0.045 4.045 25 H 0.072 0.928 26 H 0.030 0.970 27 H 0.027 0.973 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.165 0.835 33 H 0.152 0.848 34 H 0.087 0.913 35 H 0.114 0.886 36 H 0.102 0.898 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.126 0.874 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 20.875 -7.957 6.174 23.178 hybrid contribution 1.423 0.849 0.118 1.661 sum 22.298 -7.108 6.293 24.235 Atomic orbital electron populations 1.69920 1.06281 1.26745 1.51516 1.25037 0.94702 0.99090 0.94733 0.86794 0.80324 0.83802 0.78427 1.20380 1.21470 1.19134 1.21162 0.89569 0.94421 1.50263 0.90964 1.19604 0.97175 0.92625 0.95909 1.21377 0.90048 0.99456 1.02131 1.21742 0.99812 0.91239 1.01903 1.21805 0.87205 0.99453 0.95564 0.87906 1.59042 1.65110 1.06568 1.03116 1.22606 0.93201 0.74697 0.82021 1.90667 1.65262 1.49805 1.36455 1.48120 1.06662 1.72321 1.07282 1.21672 0.80304 0.97475 1.02388 1.21878 1.00582 0.98668 0.95913 1.22140 0.93643 1.04020 0.98559 1.21791 0.91746 0.99800 0.82677 0.89110 1.92855 1.81313 1.97164 1.47046 1.22283 0.97247 0.97611 0.87409 0.92838 0.97007 0.97269 0.92969 0.91106 0.91733 0.92060 0.83544 0.84807 0.91318 0.88642 0.89826 0.90924 0.90468 0.90200 0.87421 0.89956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.28 13.96 55.43 0.77 -27.51 16 2 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 22.01 27.47 -169.99 -4.67 17.34 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 7 C -0.52 -14.86 9.66 -34.44 -0.33 -15.19 16 8 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 9 C -0.02 -0.38 4.04 -27.88 -0.11 -0.49 16 10 C -0.09 -1.78 5.04 -26.73 -0.13 -1.91 16 11 C -0.11 -1.65 4.51 -26.73 -0.12 -1.77 16 12 C 0.08 0.97 2.29 -68.86 -0.16 0.81 16 13 H 0.10 1.20 6.81 -51.93 -0.35 0.85 16 14 N -0.81 -10.54 8.44 -5.66 -0.05 -10.59 16 15 C 0.49 6.25 6.94 -10.98 -0.08 6.17 16 16 O -0.54 -8.47 15.66 5.56 0.09 -8.38 16 17 N -0.61 -6.28 2.98 -173.05 -0.52 -6.79 16 18 C 0.10 0.89 6.43 -3.71 -0.02 0.87 16 19 C -0.13 -0.93 6.08 -26.61 -0.16 -1.09 16 20 C -0.15 -1.06 5.62 -26.69 -0.15 -1.21 16 21 C 0.08 0.73 4.01 -26.86 -0.11 0.62 16 22 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 23 F -0.20 -2.37 17.09 2.25 0.04 -2.33 16 24 C 0.08 0.72 5.47 -3.96 -0.02 0.70 16 25 H 0.26 7.65 8.31 -40.82 -0.34 7.32 16 26 H 0.01 0.28 7.20 -51.93 -0.37 -0.10 16 27 H 0.01 0.22 7.57 -51.93 -0.39 -0.18 16 28 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.07 1.44 7.75 -51.93 -0.40 1.03 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.06 0.87 6.95 -51.93 -0.36 0.51 16 32 H 0.35 4.70 8.58 -39.29 -0.34 4.36 16 33 H 0.34 3.84 9.06 -39.29 -0.36 3.48 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.10 0.96 7.01 -51.93 -0.36 0.59 16 36 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.11 1.06 4.82 -51.93 -0.25 0.81 16 41 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 327.24 15.07 4.93 4.93 Total: -1.00 -32.92 327.24 -7.48 -40.40 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -6.58 Total: 3.60 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: -1.50 Total: -10.67 kcal Atomic # 7 Polarization: -45.10 SS G_CDS: 0.21 Total: -44.89 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: 0.09 Total: -8.38 kcal Atomic # 9 Polarization: -2.37 SS G_CDS: 0.04 Total: -2.33 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.67 Total: 17.34 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.92 -7.48 -40.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689452587.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.238 kcal (2) G-P(sol) polarization free energy of solvation -32.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds