Wall clock time and date at job start Mon Mar 30 2020 05:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.47093 * 269.99513 * 3 2 1 5 5 H 1.48495 * 109.46891 * 29.99921 * 3 2 1 6 6 H 1.48504 * 109.47189 * 149.99610 * 3 2 1 7 7 C 1.37877 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00248 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00001 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46886 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46886 * 180.02562 * 11 10 9 13 13 H 1.08993 * 109.46977 * 304.99148 * 12 11 10 14 14 N 1.46898 * 109.47357 * 64.99611 * 12 11 10 15 15 C 1.50703 * 109.46801 * 184.99548 * 12 11 10 16 16 O 1.21281 * 120.00407 * 259.99860 * 15 12 11 17 17 N 1.34781 * 119.99971 * 80.00207 * 15 12 11 18 18 C 1.46927 * 120.62992 * 180.02562 * 17 15 12 19 19 C 1.53193 * 108.77651 * 126.36498 * 18 17 15 20 20 C 1.53043 * 109.31133 * 54.63483 * 19 18 17 21 21 C 1.53044 * 109.53626 * 298.63459 * 20 19 18 22 22 H 1.09004 * 109.49680 * 301.41504 * 21 20 19 23 23 F 1.39905 * 109.49700 * 181.35324 * 21 20 19 24 24 C 1.46928 * 120.63118 * 359.71423 * 17 15 12 25 25 H 0.97000 * 119.99684 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 27 27 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 28 28 H 1.09001 * 109.47194 * 299.99742 * 10 9 7 29 29 H 1.08992 * 109.47399 * 59.99914 * 10 9 7 30 30 H 1.09001 * 109.47109 * 299.99380 * 11 10 9 31 31 H 1.09002 * 109.47508 * 59.99571 * 11 10 9 32 32 H 1.00909 * 110.99884 * 60.00223 * 14 12 11 33 33 H 1.00901 * 111.00193 * 183.94935 * 14 12 11 34 34 H 1.09006 * 109.58438 * 246.15249 * 18 17 15 35 35 H 1.09003 * 109.59086 * 6.57676 * 18 17 15 36 36 H 1.08998 * 109.49868 * 174.58185 * 19 18 17 37 37 H 1.08997 * 109.49514 * 294.68417 * 19 18 17 38 38 H 1.08996 * 109.45963 * 58.65253 * 20 19 18 39 39 H 1.09000 * 109.45898 * 178.62969 * 20 19 18 40 40 H 1.09006 * 109.58049 * 353.42065 * 24 17 15 41 41 H 1.08999 * 109.58297 * 113.84733 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5515 -2.6366 0.0022 12 6 6.0614 -4.0791 0.0015 13 1 5.6262 -4.6187 0.8425 14 7 5.6737 -4.7349 -1.2545 15 6 7.5632 -4.0810 0.1264 16 8 8.2536 -4.2333 -0.8591 17 7 8.1393 -3.9136 1.3334 18 6 9.6021 -3.9126 1.4710 19 6 10.0281 -2.6327 2.1971 20 6 9.2719 -2.5276 3.5234 21 6 7.7680 -2.4503 3.2504 22 1 7.5567 -1.5869 2.6195 23 9 7.0794 -2.3232 4.4616 24 6 7.3164 -3.7219 2.5354 25 1 -0.4850 0.8401 -0.0004 26 1 3.8745 -0.6801 0.8912 27 1 3.8752 -0.6804 -0.8888 28 1 3.6578 -3.1506 0.8907 29 1 3.6585 -3.1502 -0.8892 30 1 5.9155 -2.1226 -0.8873 31 1 5.9141 -2.1231 0.8927 32 1 6.0652 -4.2530 -2.0500 33 1 5.9427 -5.7074 -1.2528 34 1 9.9153 -4.7821 2.0490 35 1 10.0621 -3.9428 0.4833 36 1 11.1002 -2.6642 2.3911 37 1 9.7955 -1.7676 1.5761 38 1 9.4855 -3.4050 4.1337 39 1 9.5911 -1.6301 4.0533 40 1 6.2689 -3.6263 2.2496 41 1 7.4391 -4.5755 3.2021 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689452587.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:52 Heat of formation + Delta-G solvation = -129.468883 kcal Electronic energy + Delta-G solvation = -21788.566362 eV Core-core repulsion = 18422.739317 eV Total energy + Delta-G solvation = -3365.827045 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.164 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.71012 -41.52807 -38.46972 -37.26468 -35.24686 -33.89712 -33.37027 -31.67314 -29.93097 -27.55878 -26.03503 -24.32913 -23.42113 -21.92459 -21.72443 -20.05396 -18.87574 -18.62007 -17.62718 -17.11967 -16.92493 -16.65281 -16.28669 -16.14021 -15.86420 -15.44788 -15.31946 -14.82227 -14.63032 -14.22617 -14.15054 -13.81563 -13.63638 -13.47191 -13.25910 -12.96130 -12.42750 -12.37081 -12.35553 -12.12896 -11.91680 -11.77442 -11.68326 -11.45857 -11.41249 -11.25914 -11.06224 -10.73264 -9.84123 -9.71632 -8.26258 -6.29455 1.35913 1.36643 1.38051 1.49887 1.80053 2.38129 3.09308 3.22811 3.42227 3.43388 3.57370 3.72911 3.82625 3.90212 4.01018 4.08216 4.24789 4.32336 4.42052 4.49178 4.53567 4.66906 4.75230 4.78730 4.84743 4.93765 5.01043 5.02978 5.08724 5.18073 5.25306 5.38064 5.62932 5.70661 5.74259 5.98415 6.18245 6.33933 6.44367 6.79220 6.94116 7.34895 8.90883 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.017991 B = 0.004922 C = 0.004253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.956176 B = 5687.013215 C = 6581.316841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.002 3.998 3 Si 0.949 3.051 4 H -0.269 1.269 5 H -0.284 1.284 6 H -0.245 1.245 7 C -0.529 4.529 8 H 0.031 0.969 9 C -0.014 4.014 10 C -0.082 4.082 11 C -0.097 4.097 12 C 0.081 3.919 13 H 0.118 0.882 14 N -0.819 5.819 15 C 0.489 3.511 16 O -0.575 6.575 17 N -0.602 5.602 18 C 0.100 3.900 19 C -0.124 4.124 20 C -0.140 4.140 21 C 0.072 3.928 22 H 0.083 0.917 23 F -0.216 7.216 24 C 0.077 3.923 25 H 0.265 0.735 26 H 0.020 0.980 27 H 0.012 0.988 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.347 0.653 33 H 0.349 0.651 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.107 0.893 37 H 0.060 0.940 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.100 0.900 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.093 -7.751 7.599 26.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.194 4.194 3 Si 0.773 3.227 4 H -0.194 1.194 5 H -0.210 1.210 6 H -0.168 1.168 7 C -0.567 4.567 8 H 0.050 0.950 9 C -0.051 4.051 10 C -0.120 4.120 11 C -0.136 4.136 12 C -0.035 4.035 13 H 0.135 0.865 14 N -0.348 5.348 15 C 0.276 3.724 16 O -0.455 6.455 17 N -0.335 5.335 18 C -0.022 4.022 19 C -0.162 4.162 20 C -0.177 4.177 21 C 0.035 3.965 22 H 0.101 0.899 23 F -0.197 7.197 24 C -0.046 4.046 25 H 0.074 0.926 26 H 0.038 0.962 27 H 0.031 0.969 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.161 0.839 33 H 0.163 0.837 34 H 0.107 0.893 35 H 0.098 0.902 36 H 0.126 0.874 37 H 0.079 0.921 38 H 0.108 0.892 39 H 0.105 0.895 40 H 0.119 0.881 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 23.542 -7.566 7.311 25.786 hybrid contribution 0.534 0.638 -0.201 0.856 sum 24.076 -6.928 7.111 26.042 Atomic orbital electron populations 1.70078 1.08323 1.28027 1.53057 1.26030 0.95591 1.03503 0.94305 0.85672 0.79613 0.78368 0.79076 1.19443 1.20997 1.16809 1.21538 0.92344 0.92996 1.49784 0.95043 1.19576 0.93754 0.95660 0.96158 1.21174 0.92963 0.96405 1.01448 1.21544 0.96544 0.93160 1.02322 1.21682 0.87696 0.98040 0.96040 0.86463 1.59046 1.65320 1.07298 1.03135 1.22405 0.92823 0.74731 0.82391 1.90659 1.65704 1.51523 1.37607 1.48135 1.07686 1.70906 1.06802 1.21850 0.78894 0.99262 1.02175 1.21839 1.01953 0.97180 0.95269 1.22115 0.91784 1.05019 0.98828 1.21908 0.93148 0.99449 0.82001 0.89907 1.92830 1.81826 1.97204 1.47853 1.22362 0.96669 0.98466 0.87149 0.92612 0.96187 0.96945 0.92961 0.92592 0.92337 0.90649 0.83879 0.83717 0.89261 0.90178 0.87436 0.92112 0.89163 0.89527 0.88139 0.87967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.93 13.96 21.45 0.30 -60.63 16 2 C 0.00 0.11 5.47 84.65 0.46 0.58 16 3 Si 0.95 44.90 27.47 68.60 1.88 46.78 16 4 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 5 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 6 H -0.24 -10.62 6.54 99.48 0.65 -9.97 16 7 C -0.53 -31.01 9.66 25.60 0.25 -30.76 16 8 H 0.03 2.03 7.99 -2.91 -0.02 2.01 16 9 C -0.01 -0.66 4.04 29.85 0.12 -0.54 16 10 C -0.08 -3.12 5.04 30.59 0.15 -2.97 16 11 C -0.10 -2.83 4.51 30.59 0.14 -2.69 16 12 C 0.08 1.97 2.29 44.17 0.10 2.07 16 13 H 0.12 2.52 6.81 -2.39 -0.02 2.50 16 14 N -0.82 -20.71 8.44 -171.81 -1.45 -22.16 16 15 C 0.49 11.79 6.94 87.66 0.61 12.40 16 16 O -0.58 -17.31 15.66 -3.03 -0.05 -17.36 16 17 N -0.60 -11.08 2.98 -819.79 -2.44 -13.52 16 18 C 0.10 1.46 6.43 86.36 0.56 2.02 16 19 C -0.12 -1.38 6.08 30.67 0.19 -1.20 16 20 C -0.14 -1.60 5.62 30.62 0.17 -1.43 16 21 C 0.07 1.19 4.01 30.51 0.12 1.32 16 22 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 23 F -0.22 -4.62 17.09 44.97 0.77 -3.85 16 24 C 0.08 1.23 5.47 86.20 0.47 1.70 16 25 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 26 H 0.02 0.90 7.20 -2.39 -0.02 0.88 16 27 H 0.01 0.57 7.57 -2.39 -0.02 0.55 16 28 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.06 2.28 7.75 -2.39 -0.02 2.26 16 30 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.07 1.97 6.95 -2.39 -0.02 1.96 16 32 H 0.35 9.17 8.58 -89.69 -0.77 8.40 16 33 H 0.35 7.58 9.06 -89.69 -0.81 6.77 16 34 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 35 H 0.08 1.47 7.01 -2.39 -0.02 1.46 16 36 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.10 1.77 4.82 -2.38 -0.01 1.76 16 41 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -71.82 327.24 1.75 -70.07 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: -0.60 Total: 20.17 kcal Atomic # 6 Polarization: -22.84 SS G_CDS: 3.34 Total: -19.50 kcal Atomic # 7 Polarization: -92.71 SS G_CDS: -3.59 Total: -96.31 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: -0.05 Total: -17.36 kcal Atomic # 9 Polarization: -4.62 SS G_CDS: 0.77 Total: -3.85 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.88 Total: 46.78 kcal Total: -71.82 1.75 -70.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689452587.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.400 kcal (2) G-P(sol) polarization free energy of solvation -71.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds