Wall clock time and date at job start Mon Mar 30 2020 05:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00142 * 2 1 4 4 H 1.48504 * 109.46957 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46910 * 299.99719 * 3 2 1 6 6 H 1.48494 * 109.46885 * 60.00131 * 3 2 1 7 7 C 1.37882 * 119.99925 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00050 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99891 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47087 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47345 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.47080 * 54.99155 * 11 10 9 13 13 N 1.46905 * 109.46631 * 294.99589 * 11 10 9 14 14 C 1.50700 * 109.47277 * 174.99661 * 11 10 9 15 15 O 1.21283 * 119.99803 * 99.99659 * 14 11 10 16 16 N 1.34777 * 119.99675 * 280.27534 * 14 11 10 17 17 C 1.46921 * 120.63392 * 359.43977 * 16 14 11 18 18 C 1.52760 * 109.00994 * 233.58899 * 17 16 14 19 19 C 1.53036 * 109.38235 * 305.58739 * 18 17 16 20 20 C 1.53005 * 109.44889 * 181.25525 * 19 18 17 21 21 F 1.39904 * 109.46783 * 64.94060 * 20 19 18 22 22 C 1.53035 * 109.53955 * 61.24292 * 19 18 17 23 23 C 1.46924 * 120.62813 * 179.72946 * 16 14 11 24 24 H 0.96995 * 120.00318 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.47199 * 59.99731 * 9 7 2 26 26 H 1.09008 * 109.46860 * 299.99618 * 9 7 2 27 27 H 1.09000 * 109.47628 * 59.99118 * 10 9 7 28 28 H 1.09003 * 109.46966 * 299.99465 * 10 9 7 29 29 H 1.00898 * 110.99843 * 299.99868 * 13 11 10 30 30 H 1.00899 * 110.99818 * 63.95660 * 13 11 10 31 31 H 1.09004 * 109.58490 * 353.42409 * 17 16 14 32 32 H 1.09002 * 109.58518 * 113.84767 * 17 16 14 33 33 H 1.09005 * 109.56000 * 185.55371 * 18 17 16 34 34 H 1.09001 * 109.36136 * 65.50440 * 18 17 16 35 35 H 1.09002 * 109.46377 * 301.22063 * 19 18 17 36 36 H 1.09001 * 109.47032 * 184.93879 * 20 19 18 37 37 H 1.09002 * 109.46989 * 304.94388 * 20 19 18 38 38 H 1.08994 * 109.50277 * 178.68099 * 22 19 18 39 39 H 1.08997 * 109.49664 * 58.58032 * 22 19 18 40 40 H 1.09006 * 109.58353 * 246.15683 * 23 16 14 41 41 H 1.09004 * 109.59032 * 6.43097 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0017 10 6 2.2451 -3.6621 -0.0015 11 6 1.4801 -4.9872 -0.0020 12 1 0.7883 -5.0069 -0.8440 13 7 0.7279 -5.1187 1.2530 14 6 2.4548 -6.1299 -0.1257 15 8 2.7862 -6.7536 0.8603 16 7 2.9623 -6.4552 -1.3311 17 6 2.5657 -5.7129 -2.5354 18 6 2.0661 -6.7017 -3.5872 19 6 3.1359 -7.7687 -3.8300 20 6 2.6498 -8.7419 -4.9060 21 9 2.5183 -8.0640 -6.1227 22 6 3.3991 -8.5344 -2.5314 23 6 3.9180 -7.5628 -1.4667 24 1 -0.4850 0.8400 -0.0004 25 1 0.6246 -2.5563 -0.8919 26 1 0.6239 -2.5575 0.8881 27 1 2.8712 -3.6048 0.8889 28 1 2.8724 -3.6040 -0.8910 29 1 1.3475 -5.1031 2.0492 30 1 0.0231 -4.4007 1.3291 31 1 1.7686 -5.0122 -2.2868 32 1 3.4243 -5.1684 -2.9284 33 1 1.8623 -6.1723 -4.5181 34 1 1.1522 -7.1771 -3.2311 35 1 4.0571 -7.2903 -4.1626 36 1 3.3718 -9.5509 -5.0170 37 1 1.6841 -9.1541 -4.6135 38 1 4.1440 -9.3095 -2.7106 39 1 2.4727 -8.9925 -2.1851 40 1 4.8893 -7.1723 -1.7707 41 1 4.0150 -8.0808 -0.5125 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689479885.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:58 Heat of formation + Delta-G solvation = -112.298896 kcal Electronic energy + Delta-G solvation = -21586.737688 eV Core-core repulsion = 18221.655189 eV Total energy + Delta-G solvation = -3365.082498 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.164 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -47.83158 -40.23473 -37.73203 -35.54671 -33.69061 -32.87084 -31.31035 -29.90086 -28.19279 -26.39207 -24.25577 -23.56219 -22.68237 -20.96954 -20.16209 -18.88278 -17.52383 -16.37951 -16.21598 -16.06657 -15.76453 -15.41340 -15.08754 -14.60082 -14.49172 -14.23436 -13.91912 -13.76654 -13.39394 -12.97689 -12.73418 -12.62553 -12.39806 -12.14192 -11.73230 -11.48069 -11.40848 -11.11354 -10.99120 -10.93079 -10.73495 -10.68039 -10.61454 -10.00187 -9.88149 -9.26928 -9.17965 -8.61217 -8.45443 -8.18922 -6.09768 -4.12836 2.90135 3.04907 3.25514 3.33670 3.37502 4.17855 4.29555 4.37694 4.39799 4.68132 4.78553 4.83840 4.97176 5.12068 5.14181 5.18830 5.26672 5.33112 5.35822 5.45007 5.55691 5.63357 5.69651 5.73643 5.77793 5.83128 5.88150 6.10458 6.27129 6.49557 6.58246 6.85546 7.37738 7.50196 7.58034 7.63563 7.87307 7.90181 8.29870 8.42346 8.93312 9.52317 11.01171 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.020184 B = 0.004180 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.881752 B = 6696.485387 C = 7500.254629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.138 4.138 11 C 0.074 3.926 12 H 0.097 0.903 13 N -0.831 5.831 14 C 0.529 3.471 15 O -0.540 6.540 16 N -0.615 5.615 17 C 0.104 3.896 18 C -0.132 4.132 19 C -0.121 4.121 20 C 0.066 3.934 21 F -0.218 7.218 22 C -0.126 4.126 23 C 0.113 3.887 24 H 0.261 0.739 25 H 0.018 0.982 26 H 0.018 0.982 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.345 0.655 30 H 0.354 0.646 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.228 -16.577 -8.514 19.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.178 4.178 11 C -0.041 4.041 12 H 0.115 0.885 13 N -0.363 5.363 14 C 0.318 3.682 15 O -0.416 6.416 16 N -0.350 5.350 17 C -0.018 4.018 18 C -0.170 4.170 19 C -0.140 4.140 20 C 0.011 3.989 21 F -0.199 7.199 22 C -0.165 4.165 23 C -0.010 4.010 24 H 0.071 0.929 25 H 0.037 0.963 26 H 0.036 0.964 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.158 0.842 30 H 0.169 0.831 31 H 0.116 0.884 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.015 -17.490 -8.269 19.986 hybrid contribution 0.831 1.998 -0.010 2.164 sum 5.846 -15.492 -8.280 18.513 Atomic orbital electron populations 1.69953 1.06016 1.26685 1.50518 1.25006 0.94854 0.99292 0.95109 0.86538 0.80122 0.83712 0.77669 1.19758 1.20930 1.20942 1.21212 0.93050 0.90859 1.51012 0.92678 1.19105 0.93692 0.91119 0.97346 1.22403 0.99922 0.93901 1.01587 1.21516 0.94740 0.92442 0.95427 0.88534 1.58760 1.18466 1.55860 1.03220 1.20900 0.80896 0.84400 0.82048 1.90615 1.60658 1.53656 1.36704 1.48080 1.45413 1.34061 1.07493 1.21746 1.01318 0.94059 0.84725 1.21920 0.98261 0.97112 0.99745 1.21780 1.00326 0.96768 0.95114 1.22060 1.02653 0.94168 0.79987 1.92768 1.97528 1.82551 1.47054 1.21875 1.02343 0.97969 0.94292 1.21476 0.91585 0.87874 1.00071 0.92926 0.96345 0.96401 0.92691 0.92439 0.84160 0.83077 0.88411 0.91021 0.89890 0.91127 0.89703 0.90857 0.90776 0.90548 0.91063 0.91702 0.88852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.85 13.29 55.43 0.74 -25.11 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.52 -14.25 9.11 -34.44 -0.31 -14.56 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.59 4.74 -27.88 -0.13 0.46 16 10 C -0.14 -2.71 4.55 -26.73 -0.12 -2.83 16 11 C 0.07 1.26 2.36 -68.86 -0.16 1.10 16 12 H 0.10 1.57 6.53 -51.93 -0.34 1.23 16 13 N -0.83 -14.47 8.94 -5.65 -0.05 -14.52 16 14 C 0.53 8.92 6.95 -10.98 -0.08 8.85 16 15 O -0.54 -10.64 15.66 5.55 0.09 -10.55 16 16 N -0.62 -8.24 2.98 -173.03 -0.52 -8.75 16 17 C 0.10 1.21 5.55 -3.94 -0.02 1.19 16 18 C -0.13 -1.26 5.27 -26.84 -0.14 -1.41 16 19 C -0.12 -0.99 2.45 -90.58 -0.22 -1.21 16 20 C 0.07 0.49 6.91 37.16 0.26 0.74 16 21 F -0.22 -2.24 17.01 2.25 0.04 -2.21 16 22 C -0.13 -1.03 5.36 -26.61 -0.14 -1.18 16 23 C 0.11 1.24 6.43 -3.71 -0.02 1.22 16 24 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.02 0.45 6.87 -51.92 -0.36 0.09 16 27 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 28 H 0.06 1.08 7.21 -51.93 -0.37 0.71 16 29 H 0.35 6.10 8.58 -39.29 -0.34 5.76 16 30 H 0.35 6.14 7.55 -39.29 -0.30 5.84 16 31 H 0.10 1.24 5.20 -51.93 -0.27 0.97 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 0.77 7.90 -51.93 -0.41 0.36 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.09 1.17 7.00 -51.93 -0.36 0.80 16 LS Contribution 328.19 15.07 4.95 4.95 Total: -1.00 -31.30 328.19 -7.49 -38.80 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -6.52 Total: 7.34 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: -1.20 Total: -6.09 kcal Atomic # 7 Polarization: -48.56 SS G_CDS: 0.17 Total: -48.39 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.09 Total: -10.55 kcal Atomic # 9 Polarization: -2.24 SS G_CDS: 0.04 Total: -2.21 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.30 -7.49 -38.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689479885.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.499 kcal (2) G-P(sol) polarization free energy of solvation -31.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds