Wall clock time and date at job start Mon Mar 30 2020 05:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00142 * 2 1 4 4 H 1.48504 * 109.46957 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46910 * 299.99719 * 3 2 1 6 6 H 1.48494 * 109.46885 * 60.00131 * 3 2 1 7 7 C 1.37882 * 119.99925 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00050 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99891 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47087 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47345 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.47080 * 54.99155 * 11 10 9 13 13 N 1.46905 * 109.46631 * 294.99589 * 11 10 9 14 14 C 1.50700 * 109.47277 * 174.99661 * 11 10 9 15 15 O 1.21283 * 119.99803 * 99.99659 * 14 11 10 16 16 N 1.34777 * 119.99675 * 280.27534 * 14 11 10 17 17 C 1.46921 * 120.63392 * 359.43977 * 16 14 11 18 18 C 1.52760 * 109.00994 * 233.58899 * 17 16 14 19 19 C 1.53036 * 109.38235 * 305.58739 * 18 17 16 20 20 C 1.53005 * 109.44889 * 181.25525 * 19 18 17 21 21 F 1.39904 * 109.46783 * 64.94060 * 20 19 18 22 22 C 1.53035 * 109.53955 * 61.24292 * 19 18 17 23 23 C 1.46924 * 120.62813 * 179.72946 * 16 14 11 24 24 H 0.96995 * 120.00318 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.47199 * 59.99731 * 9 7 2 26 26 H 1.09008 * 109.46860 * 299.99618 * 9 7 2 27 27 H 1.09000 * 109.47628 * 59.99118 * 10 9 7 28 28 H 1.09003 * 109.46966 * 299.99465 * 10 9 7 29 29 H 1.00898 * 110.99843 * 299.99868 * 13 11 10 30 30 H 1.00899 * 110.99818 * 63.95660 * 13 11 10 31 31 H 1.09004 * 109.58490 * 353.42409 * 17 16 14 32 32 H 1.09002 * 109.58518 * 113.84767 * 17 16 14 33 33 H 1.09005 * 109.56000 * 185.55371 * 18 17 16 34 34 H 1.09001 * 109.36136 * 65.50440 * 18 17 16 35 35 H 1.09002 * 109.46377 * 301.22063 * 19 18 17 36 36 H 1.09001 * 109.47032 * 184.93879 * 20 19 18 37 37 H 1.09002 * 109.46989 * 304.94388 * 20 19 18 38 38 H 1.08994 * 109.50277 * 178.68099 * 22 19 18 39 39 H 1.08997 * 109.49664 * 58.58032 * 22 19 18 40 40 H 1.09006 * 109.58353 * 246.15683 * 23 16 14 41 41 H 1.09004 * 109.59032 * 6.43097 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0017 10 6 2.2451 -3.6621 -0.0015 11 6 1.4801 -4.9872 -0.0020 12 1 0.7883 -5.0069 -0.8440 13 7 0.7279 -5.1187 1.2530 14 6 2.4548 -6.1299 -0.1257 15 8 2.7862 -6.7536 0.8603 16 7 2.9623 -6.4552 -1.3311 17 6 2.5657 -5.7129 -2.5354 18 6 2.0661 -6.7017 -3.5872 19 6 3.1359 -7.7687 -3.8300 20 6 2.6498 -8.7419 -4.9060 21 9 2.5183 -8.0640 -6.1227 22 6 3.3991 -8.5344 -2.5314 23 6 3.9180 -7.5628 -1.4667 24 1 -0.4850 0.8400 -0.0004 25 1 0.6246 -2.5563 -0.8919 26 1 0.6239 -2.5575 0.8881 27 1 2.8712 -3.6048 0.8889 28 1 2.8724 -3.6040 -0.8910 29 1 1.3475 -5.1031 2.0492 30 1 0.0231 -4.4007 1.3291 31 1 1.7686 -5.0122 -2.2868 32 1 3.4243 -5.1684 -2.9284 33 1 1.8623 -6.1723 -4.5181 34 1 1.1522 -7.1771 -3.2311 35 1 4.0571 -7.2903 -4.1626 36 1 3.3718 -9.5509 -5.0170 37 1 1.6841 -9.1541 -4.6135 38 1 4.1440 -9.3095 -2.7106 39 1 2.4727 -8.9925 -2.1851 40 1 4.8893 -7.1723 -1.7707 41 1 4.0150 -8.0808 -0.5125 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689479885.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:58 Heat of formation + Delta-G solvation = -132.859120 kcal Electronic energy + Delta-G solvation = -21587.629246 eV Core-core repulsion = 18221.655189 eV Total energy + Delta-G solvation = -3365.974057 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.164 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.50848 -41.41778 -38.77516 -37.13109 -34.90076 -34.60300 -32.17696 -31.70366 -29.18074 -27.87998 -25.81891 -24.43765 -23.78362 -22.33082 -21.32309 -20.02775 -18.90585 -18.25993 -17.19739 -16.85614 -16.62519 -16.48433 -16.24855 -16.16303 -15.73975 -15.54848 -15.09309 -14.80334 -14.66551 -14.42553 -14.06058 -13.76886 -13.55427 -13.43847 -13.23098 -12.93536 -12.67859 -12.51157 -12.25046 -12.12792 -11.82772 -11.70570 -11.66958 -11.49160 -11.38342 -11.27768 -10.65258 -10.56673 -9.73876 -9.62299 -8.21822 -6.32116 1.38586 1.40275 1.51747 1.56985 1.94388 2.39766 3.12045 3.43761 3.51243 3.61033 3.73263 3.78974 4.03249 4.07659 4.18786 4.20748 4.24660 4.32670 4.44740 4.57634 4.64067 4.66699 4.71348 4.80475 4.86815 4.90231 4.97705 5.04724 5.06809 5.12859 5.39431 5.45936 5.56943 5.63912 5.79778 6.03703 6.20523 6.34412 6.45510 6.83119 7.14062 7.37185 8.89169 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.020184 B = 0.004180 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.881752 B = 6696.485387 C = 7500.254629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.958 3.042 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.280 1.280 7 C -0.544 4.544 8 H 0.054 0.946 9 C 0.031 3.969 10 C -0.120 4.120 11 C 0.080 3.920 12 H 0.106 0.894 13 N -0.830 5.830 14 C 0.526 3.474 15 O -0.574 6.574 16 N -0.608 5.608 17 C 0.100 3.900 18 C -0.128 4.128 19 C -0.116 4.116 20 C 0.064 3.936 21 F -0.235 7.235 22 C -0.116 4.116 23 C 0.106 3.894 24 H 0.264 0.736 25 H 0.003 0.997 26 H 0.002 0.998 27 H 0.042 0.958 28 H 0.065 0.935 29 H 0.343 0.657 30 H 0.352 0.648 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.083 0.917 38 H 0.105 0.895 39 H 0.065 0.935 40 H 0.080 0.920 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.433 -17.274 -9.786 20.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.783 3.217 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.206 1.206 7 C -0.582 4.582 8 H 0.072 0.928 9 C -0.006 4.006 10 C -0.160 4.160 11 C -0.035 4.035 12 H 0.124 0.876 13 N -0.361 5.361 14 C 0.314 3.686 15 O -0.453 6.453 16 N -0.341 5.341 17 C -0.022 4.022 18 C -0.166 4.166 19 C -0.135 4.135 20 C 0.009 3.991 21 F -0.217 7.217 22 C -0.154 4.154 23 C -0.016 4.016 24 H 0.073 0.927 25 H 0.021 0.979 26 H 0.020 0.980 27 H 0.061 0.939 28 H 0.084 0.916 29 H 0.156 0.844 30 H 0.167 0.833 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.086 0.914 35 H 0.107 0.893 36 H 0.116 0.884 37 H 0.101 0.899 38 H 0.124 0.876 39 H 0.084 0.916 40 H 0.098 0.902 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.234 -18.202 -9.582 21.494 hybrid contribution 0.455 2.199 0.361 2.274 sum 6.688 -16.004 -9.220 19.643 Atomic orbital electron populations 1.70060 1.07473 1.27711 1.51358 1.25841 0.95702 1.02898 0.94706 0.85500 0.79026 0.79329 0.77811 1.19025 1.20229 1.20573 1.21626 0.93305 0.92408 1.50842 0.92790 1.18957 0.93952 0.91926 0.95738 1.22135 0.98825 0.93715 1.01310 1.21431 0.94842 0.91576 0.95648 0.87586 1.58775 1.18398 1.55626 1.03344 1.20723 0.80900 0.84164 0.82783 1.90599 1.61880 1.54805 1.38003 1.48144 1.44779 1.34313 1.06849 1.21876 1.01362 0.94489 0.84522 1.21881 0.98686 0.97132 0.98932 1.21736 0.99880 0.96502 0.95390 1.22207 1.03935 0.94190 0.78723 1.92736 1.97660 1.83044 1.48213 1.21808 1.02849 0.97700 0.93054 1.21713 0.91832 0.87609 1.00452 0.92717 0.97872 0.97977 0.93879 0.91639 0.84354 0.83257 0.89744 0.90095 0.89530 0.91405 0.89280 0.88404 0.89904 0.87641 0.91601 0.90196 0.90455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.06 13.29 21.45 0.28 -53.78 16 2 C 0.01 0.39 5.46 84.66 0.46 0.86 16 3 Si 0.96 43.24 29.54 68.60 2.03 45.27 16 4 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 5 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 6 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.54 -29.79 9.11 25.60 0.23 -29.56 16 8 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 9 C 0.03 1.54 4.74 29.85 0.14 1.68 16 10 C -0.12 -4.74 4.55 30.59 0.14 -4.60 16 11 C 0.08 2.76 2.36 44.17 0.10 2.86 16 12 H 0.11 3.45 6.53 -2.39 -0.02 3.43 16 13 N -0.83 -29.33 8.94 -171.79 -1.54 -30.86 16 14 C 0.53 17.62 6.95 87.66 0.61 18.22 16 15 O -0.57 -22.66 15.66 -3.04 -0.05 -22.70 16 16 N -0.61 -15.62 2.98 -819.73 -2.44 -18.06 16 17 C 0.10 2.19 5.55 86.22 0.48 2.67 16 18 C -0.13 -2.22 5.27 30.53 0.16 -2.06 16 19 C -0.12 -1.57 2.45 -10.77 -0.03 -1.60 16 20 C 0.06 0.75 6.91 71.98 0.50 1.25 16 21 F -0.24 -4.33 17.01 44.97 0.76 -3.56 16 22 C -0.12 -1.57 5.36 30.67 0.16 -1.41 16 23 C 0.11 2.14 6.43 86.36 0.56 2.70 16 24 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 25 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 26 H 0.00 0.10 6.87 -2.38 -0.02 0.08 16 27 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.06 2.45 7.21 -2.39 -0.02 2.43 16 29 H 0.34 12.38 8.58 -89.70 -0.77 11.61 16 30 H 0.35 12.52 7.55 -89.69 -0.68 11.85 16 31 H 0.08 2.09 5.20 -2.38 -0.01 2.08 16 32 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.09 1.47 7.90 -2.38 -0.02 1.45 16 34 H 0.07 1.22 8.14 -2.39 -0.02 1.21 16 35 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.10 0.70 8.14 -2.39 -0.02 0.69 16 37 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 41 H 0.08 1.86 7.00 -2.38 -0.02 1.84 16 Total: -1.00 -66.83 328.19 2.16 -64.67 By element: Atomic # 1 Polarization: 28.43 SS G_CDS: -0.41 Total: 28.02 kcal Atomic # 6 Polarization: -12.51 SS G_CDS: 3.52 Total: -8.99 kcal Atomic # 7 Polarization: -99.01 SS G_CDS: -3.69 Total: -102.70 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -0.05 Total: -22.70 kcal Atomic # 9 Polarization: -4.33 SS G_CDS: 0.76 Total: -3.56 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -66.83 2.16 -64.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689479885.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.194 kcal (2) G-P(sol) polarization free energy of solvation -66.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds