Wall clock time and date at job start Mon Mar 30 2020 04:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99799 * 2 1 4 4 H 1.48500 * 109.47304 * 270.00152 * 3 2 1 5 5 H 1.48500 * 109.47235 * 30.00239 * 3 2 1 6 6 H 1.48502 * 109.46944 * 150.00702 * 3 2 1 7 7 C 1.37876 * 120.00120 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99812 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99940 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47039 * 179.97438 * 9 7 2 11 11 C 1.53007 * 109.47190 * 179.97438 * 10 9 7 12 12 H 1.08995 * 109.47208 * 305.00110 * 11 10 9 13 13 N 1.46908 * 109.46870 * 64.99908 * 11 10 9 14 14 C 1.50700 * 109.46965 * 184.99643 * 11 10 9 15 15 O 1.21284 * 120.00036 * 260.00176 * 14 11 10 16 16 N 1.34773 * 119.99973 * 80.27875 * 14 11 10 17 17 C 1.47152 * 120.98030 * 353.85291 * 16 14 11 18 18 C 1.53718 * 108.16223 * 129.43367 * 17 16 14 19 19 O 1.42953 * 109.14773 * 52.53667 * 18 17 16 20 20 C 1.42966 * 114.16868 * 297.29045 * 19 18 17 21 21 C 1.47146 * 120.98297 * 174.13505 * 16 14 11 22 22 H 1.09001 * 109.68421 * 110.78964 * 21 16 14 23 23 C 1.52994 * 109.68439 * 350.27295 * 21 16 14 24 24 O 1.42900 * 109.47156 * 298.57008 * 23 21 16 25 25 H 0.97005 * 119.99913 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.47659 * 59.99580 * 9 7 2 27 27 H 1.09002 * 109.47533 * 299.99269 * 9 7 2 28 28 H 1.09001 * 109.47406 * 59.99530 * 10 9 7 29 29 H 1.09003 * 109.47270 * 299.99551 * 10 9 7 30 30 H 1.00897 * 110.99555 * 296.04721 * 13 11 10 31 31 H 1.00896 * 111.00007 * 60.00020 * 13 11 10 32 32 H 1.09007 * 109.68427 * 249.21060 * 17 16 14 33 33 H 1.08998 * 109.68397 * 9.76440 * 17 16 14 34 34 H 1.09004 * 109.65323 * 292.56679 * 18 17 16 35 35 H 1.09000 * 109.44259 * 172.37800 * 18 17 16 36 36 H 1.09001 * 109.51087 * 302.66064 * 20 19 18 37 37 H 1.08995 * 109.51220 * 182.50425 * 20 19 18 38 38 H 1.09000 * 109.47346 * 58.56432 * 23 21 16 39 39 H 1.08997 * 109.47423 * 178.57468 * 23 21 16 40 40 H 0.96697 * 114.00206 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 6 5.5516 -2.6365 -0.0022 12 1 5.9143 -2.0474 -0.8445 13 7 6.0423 -2.0506 1.2525 14 6 6.0538 -4.0519 -0.1259 15 8 6.4287 -4.6507 0.8600 16 7 6.0917 -4.6506 -1.3328 17 6 5.5250 -3.9944 -2.5218 18 6 6.5830 -4.0262 -3.6365 19 8 7.0405 -5.3693 -3.8106 20 6 7.6914 -5.9194 -2.6628 21 6 6.6952 -5.9822 -1.4993 22 1 5.9173 -6.7128 -1.7211 23 6 7.4257 -6.3811 -0.2155 24 8 8.4737 -5.4457 0.0465 25 1 -0.4850 0.8401 0.0004 26 1 3.8753 -0.6803 0.8887 27 1 3.8746 -0.6801 -0.8912 28 1 3.6579 -3.1506 -0.8907 29 1 3.6587 -3.1501 0.8893 30 1 5.7728 -1.0813 1.3285 31 1 5.7194 -2.5792 2.0489 32 1 4.6312 -4.5282 -2.8448 33 1 5.2707 -2.9614 -2.2849 34 1 7.4232 -3.3879 -3.3628 35 1 6.1411 -3.6686 -4.5665 36 1 8.5356 -5.2881 -2.3856 37 1 8.0469 -6.9239 -2.8923 38 1 6.7226 -6.3815 0.6175 39 1 7.8498 -7.3781 -0.3336 40 1 8.9802 -5.6367 0.8478 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691542595.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:28 Heat of formation + Delta-G solvation = -112.340531 kcal Electronic energy + Delta-G solvation = -22477.369610 eV Core-core repulsion = 19099.912517 eV Total energy + Delta-G solvation = -3377.457093 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.69493 -38.37681 -36.76871 -35.44635 -34.65510 -32.84700 -31.95228 -30.33933 -28.57933 -26.71707 -25.99730 -23.94243 -22.92412 -21.55909 -20.22866 -18.96042 -17.69806 -17.35961 -16.77075 -16.60772 -15.63636 -15.56680 -15.23840 -14.92902 -14.75085 -14.27909 -14.19735 -13.87088 -13.44336 -13.22812 -13.14633 -12.70607 -12.56708 -12.16925 -11.88778 -11.55352 -11.51269 -11.16969 -11.01213 -10.88680 -10.36991 -10.22242 -10.12722 -9.96925 -9.90498 -9.33893 -8.84159 -8.64290 -8.43686 -8.23536 -6.13924 -4.13684 2.81490 2.95349 3.22973 3.31783 3.32807 3.64950 4.24687 4.35521 4.56839 4.63816 4.82454 4.95180 4.98341 5.09435 5.14836 5.19091 5.25628 5.34218 5.38690 5.47758 5.57895 5.61740 5.71245 5.86668 5.91076 6.11682 6.28934 6.50113 6.62012 6.92645 7.06232 7.18198 7.30022 7.53595 7.64563 7.74893 7.77694 8.41835 8.44315 8.89943 9.47312 10.99271 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.025620 B = 0.004918 C = 0.004522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.612777 B = 5692.250660 C = 6190.537032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.068 3.932 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.524 4.524 8 H 0.071 0.929 9 C -0.010 4.010 10 C -0.132 4.132 11 C 0.071 3.929 12 H 0.094 0.906 13 N -0.828 5.828 14 C 0.541 3.459 15 O -0.521 6.521 16 N -0.613 5.613 17 C 0.069 3.931 18 C 0.047 3.953 19 O -0.383 6.383 20 C 0.054 3.946 21 C 0.116 3.884 22 H 0.088 0.912 23 C 0.073 3.927 24 O -0.559 6.559 25 H 0.264 0.736 26 H 0.016 0.984 27 H 0.013 0.987 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.349 0.651 31 H 0.347 0.653 32 H 0.080 0.920 33 H 0.104 0.896 34 H 0.057 0.943 35 H 0.107 0.893 36 H 0.067 0.933 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.032 0.968 40 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.626 -10.445 -4.669 19.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.134 4.134 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.562 4.562 8 H 0.089 0.911 9 C -0.047 4.047 10 C -0.172 4.172 11 C -0.044 4.044 12 H 0.112 0.888 13 N -0.360 5.360 14 C 0.331 3.669 15 O -0.397 6.397 16 N -0.350 5.350 17 C -0.054 4.054 18 C -0.030 4.030 19 O -0.301 6.301 20 C -0.023 4.023 21 C 0.012 3.988 22 H 0.105 0.895 23 C -0.005 4.005 24 O -0.364 6.364 25 H 0.074 0.926 26 H 0.034 0.966 27 H 0.031 0.969 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.164 0.836 31 H 0.160 0.840 32 H 0.099 0.901 33 H 0.122 0.878 34 H 0.076 0.924 35 H 0.125 0.875 36 H 0.085 0.915 37 H 0.117 0.883 38 H 0.110 0.890 39 H 0.050 0.950 40 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 16.150 -10.632 -5.118 20.002 hybrid contribution -0.625 0.950 0.778 1.378 sum 15.525 -9.682 -4.340 18.804 Atomic orbital electron populations 1.69912 1.06346 1.27033 1.50596 1.25037 0.94740 0.99202 0.94382 0.86773 0.80325 0.83570 0.78557 1.20223 1.21311 1.18994 1.21055 0.89189 0.94525 1.51433 0.91085 1.19568 0.97580 0.91309 0.96281 1.22259 0.91417 1.01134 1.02377 1.21541 0.95491 0.92004 0.95321 0.88834 1.58719 1.66703 1.07275 1.03257 1.20574 0.76204 0.88240 0.81915 1.90490 1.47357 1.64664 1.37178 1.47991 1.60206 1.18365 1.08420 1.22648 0.96862 1.00284 0.85616 1.23091 0.96704 0.83982 0.99258 1.87931 1.76905 1.28724 1.36519 1.22978 0.94460 0.99909 0.84982 1.22003 0.95501 0.85248 0.96011 0.89469 1.22443 0.91145 0.89848 0.97020 1.86418 1.48031 1.53873 1.48065 0.92606 0.96591 0.96875 0.91905 0.92050 0.83601 0.83980 0.90132 0.87814 0.92443 0.87531 0.91477 0.88272 0.89042 0.94973 0.77818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.17 13.96 55.43 0.77 -26.40 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 20.91 27.47 -169.99 -4.67 16.24 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -5.97 6.54 56.52 0.37 -5.60 16 7 C -0.52 -14.37 9.66 -34.44 -0.33 -14.70 16 8 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 9 C -0.01 -0.22 3.81 -27.88 -0.11 -0.33 16 10 C -0.13 -2.46 4.49 -26.73 -0.12 -2.58 16 11 C 0.07 1.16 2.35 -68.86 -0.16 1.00 16 12 H 0.09 1.44 6.80 -51.93 -0.35 1.09 16 13 N -0.83 -13.43 8.94 -5.65 -0.05 -13.48 16 14 C 0.54 8.75 6.40 -10.99 -0.07 8.68 16 15 O -0.52 -9.14 11.23 -18.20 -0.20 -9.34 16 16 N -0.61 -8.45 3.00 -164.49 -0.49 -8.95 16 17 C 0.07 0.83 5.72 -3.31 -0.02 0.81 16 18 C 0.05 0.50 7.00 37.53 0.26 0.77 16 19 O -0.38 -4.59 10.74 -35.23 -0.38 -4.97 16 20 C 0.05 0.60 6.22 37.31 0.23 0.83 16 21 C 0.12 1.40 3.47 -67.43 -0.23 1.17 16 22 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 23 C 0.07 0.87 5.80 37.15 0.22 1.09 16 24 O -0.56 -7.29 10.70 -58.99 -0.63 -7.92 16 25 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 26 H 0.02 0.35 5.93 -51.93 -0.31 0.04 16 27 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 28 H 0.06 1.14 6.85 -51.93 -0.36 0.79 16 29 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.35 5.53 7.55 -39.29 -0.30 5.24 16 31 H 0.35 5.68 8.58 -39.29 -0.34 5.34 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.10 1.26 5.13 -51.93 -0.27 1.00 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.07 0.82 7.41 -51.93 -0.38 0.44 16 37 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.09 1.29 5.81 -52.25 -0.30 0.98 16 39 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.38 3.71 9.12 45.56 0.42 4.13 16 LS Contribution 311.21 15.07 4.69 4.69 Total: -1.00 -32.47 311.21 -6.52 -39.00 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -5.13 Total: 12.57 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -0.43 Total: -1.45 kcal Atomic # 7 Polarization: -49.06 SS G_CDS: 0.23 Total: -48.83 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: -1.21 Total: -22.23 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.67 Total: 16.24 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.47 -6.52 -39.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691542595.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.344 kcal (2) G-P(sol) polarization free energy of solvation -32.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds