Wall clock time and date at job start Mon Mar 30 2020 04:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99799 * 2 1 4 4 H 1.48500 * 109.47304 * 270.00152 * 3 2 1 5 5 H 1.48500 * 109.47235 * 30.00239 * 3 2 1 6 6 H 1.48502 * 109.46944 * 150.00702 * 3 2 1 7 7 C 1.37876 * 120.00120 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99812 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99940 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47039 * 179.97438 * 9 7 2 11 11 C 1.53007 * 109.47190 * 179.97438 * 10 9 7 12 12 H 1.08995 * 109.47208 * 305.00110 * 11 10 9 13 13 N 1.46908 * 109.46870 * 64.99908 * 11 10 9 14 14 C 1.50700 * 109.46965 * 184.99643 * 11 10 9 15 15 O 1.21284 * 120.00036 * 260.00176 * 14 11 10 16 16 N 1.34773 * 119.99973 * 80.27875 * 14 11 10 17 17 C 1.47152 * 120.98030 * 353.85291 * 16 14 11 18 18 C 1.53718 * 108.16223 * 129.43367 * 17 16 14 19 19 O 1.42953 * 109.14773 * 52.53667 * 18 17 16 20 20 C 1.42966 * 114.16868 * 297.29045 * 19 18 17 21 21 C 1.47146 * 120.98297 * 174.13505 * 16 14 11 22 22 H 1.09001 * 109.68421 * 110.78964 * 21 16 14 23 23 C 1.52994 * 109.68439 * 350.27295 * 21 16 14 24 24 O 1.42900 * 109.47156 * 298.57008 * 23 21 16 25 25 H 0.97005 * 119.99913 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.47659 * 59.99580 * 9 7 2 27 27 H 1.09002 * 109.47533 * 299.99269 * 9 7 2 28 28 H 1.09001 * 109.47406 * 59.99530 * 10 9 7 29 29 H 1.09003 * 109.47270 * 299.99551 * 10 9 7 30 30 H 1.00897 * 110.99555 * 296.04721 * 13 11 10 31 31 H 1.00896 * 111.00007 * 60.00020 * 13 11 10 32 32 H 1.09007 * 109.68427 * 249.21060 * 17 16 14 33 33 H 1.08998 * 109.68397 * 9.76440 * 17 16 14 34 34 H 1.09004 * 109.65323 * 292.56679 * 18 17 16 35 35 H 1.09000 * 109.44259 * 172.37800 * 18 17 16 36 36 H 1.09001 * 109.51087 * 302.66064 * 20 19 18 37 37 H 1.08995 * 109.51220 * 182.50425 * 20 19 18 38 38 H 1.09000 * 109.47346 * 58.56432 * 23 21 16 39 39 H 1.08997 * 109.47423 * 178.57468 * 23 21 16 40 40 H 0.96697 * 114.00206 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 6 5.5516 -2.6365 -0.0022 12 1 5.9143 -2.0474 -0.8445 13 7 6.0423 -2.0506 1.2525 14 6 6.0538 -4.0519 -0.1259 15 8 6.4287 -4.6507 0.8600 16 7 6.0917 -4.6506 -1.3328 17 6 5.5250 -3.9944 -2.5218 18 6 6.5830 -4.0262 -3.6365 19 8 7.0405 -5.3693 -3.8106 20 6 7.6914 -5.9194 -2.6628 21 6 6.6952 -5.9822 -1.4993 22 1 5.9173 -6.7128 -1.7211 23 6 7.4257 -6.3811 -0.2155 24 8 8.4737 -5.4457 0.0465 25 1 -0.4850 0.8401 0.0004 26 1 3.8753 -0.6803 0.8887 27 1 3.8746 -0.6801 -0.8912 28 1 3.6579 -3.1506 -0.8907 29 1 3.6587 -3.1501 0.8893 30 1 5.7728 -1.0813 1.3285 31 1 5.7194 -2.5792 2.0489 32 1 4.6312 -4.5282 -2.8448 33 1 5.2707 -2.9614 -2.2849 34 1 7.4232 -3.3879 -3.3628 35 1 6.1411 -3.6686 -4.5665 36 1 8.5356 -5.2881 -2.3856 37 1 8.0469 -6.9239 -2.8923 38 1 6.7226 -6.3815 0.6175 39 1 7.8498 -7.3781 -0.3336 40 1 8.9802 -5.6367 0.8478 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691542595.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:27 Heat of formation + Delta-G solvation = -139.273953 kcal Electronic energy + Delta-G solvation = -22478.537531 eV Core-core repulsion = 19099.912517 eV Total energy + Delta-G solvation = -3378.625014 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.77665 -39.42732 -37.85845 -36.78569 -35.70875 -34.81528 -32.89812 -32.08715 -29.62929 -28.23163 -26.90679 -25.53877 -23.84344 -22.84978 -21.76455 -20.14008 -19.03305 -18.60766 -18.31210 -17.60331 -16.69088 -16.59235 -16.30562 -16.15810 -15.97893 -15.87040 -15.54460 -15.03877 -14.77404 -14.65099 -14.43909 -14.16263 -13.77624 -13.53339 -13.11040 -13.00639 -12.72240 -12.42219 -12.18724 -12.08609 -11.86420 -11.75657 -11.69657 -11.41765 -11.21774 -11.05401 -10.77618 -10.02348 -9.55095 -9.45841 -8.30230 -6.35875 1.37747 1.40055 1.50906 1.65024 1.83266 2.35813 2.82424 3.05453 3.30644 3.56999 3.67862 3.71851 3.90507 4.02375 4.06454 4.14702 4.15969 4.25453 4.37848 4.50340 4.57392 4.59179 4.68884 4.80468 4.82418 4.90950 4.94551 5.00252 5.34057 5.44043 5.49879 5.61676 6.04295 6.07772 6.24368 6.36775 6.48253 6.72498 6.93977 7.24347 7.29190 8.86547 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.025620 B = 0.004918 C = 0.004522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.612777 B = 5692.250660 C = 6190.537032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.005 3.995 3 Si 0.952 3.048 4 H -0.264 1.264 5 H -0.289 1.289 6 H -0.240 1.240 7 C -0.534 4.534 8 H 0.026 0.974 9 C -0.005 4.005 10 C -0.118 4.118 11 C 0.080 3.920 12 H 0.109 0.891 13 N -0.827 5.827 14 C 0.534 3.466 15 O -0.540 6.540 16 N -0.612 5.612 17 C 0.064 3.936 18 C 0.050 3.950 19 O -0.392 6.392 20 C 0.061 3.939 21 C 0.107 3.893 22 H 0.097 0.903 23 C 0.078 3.922 24 O -0.576 6.576 25 H 0.266 0.734 26 H 0.024 0.976 27 H 0.029 0.971 28 H 0.063 0.937 29 H 0.041 0.959 30 H 0.352 0.648 31 H 0.345 0.655 32 H 0.083 0.917 33 H 0.102 0.898 34 H 0.057 0.943 35 H 0.130 0.870 36 H 0.055 0.945 37 H 0.124 0.876 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.868 -10.001 -5.653 21.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.192 4.192 3 Si 0.775 3.225 4 H -0.188 1.188 5 H -0.216 1.216 6 H -0.163 1.163 7 C -0.572 4.572 8 H 0.045 0.955 9 C -0.042 4.042 10 C -0.158 4.158 11 C -0.035 4.035 12 H 0.126 0.874 13 N -0.358 5.358 14 C 0.323 3.677 15 O -0.418 6.418 16 N -0.348 5.348 17 C -0.059 4.059 18 C -0.027 4.027 19 O -0.310 6.310 20 C -0.016 4.016 21 C 0.004 3.996 22 H 0.114 0.886 23 C 0.000 4.000 24 O -0.382 6.382 25 H 0.075 0.925 26 H 0.042 0.958 27 H 0.048 0.952 28 H 0.082 0.918 29 H 0.060 0.940 30 H 0.167 0.833 31 H 0.158 0.842 32 H 0.102 0.898 33 H 0.120 0.880 34 H 0.075 0.925 35 H 0.147 0.853 36 H 0.073 0.927 37 H 0.142 0.858 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 18.419 -10.213 -6.119 21.932 hybrid contribution -1.385 0.697 1.084 1.892 sum 17.034 -9.516 -5.035 20.151 Atomic orbital electron populations 1.70081 1.08532 1.28234 1.52451 1.26048 0.95568 1.03664 0.93926 0.85638 0.79647 0.77845 0.79400 1.18843 1.21564 1.16285 1.21411 0.92092 0.92901 1.50778 0.95534 1.19489 0.93888 0.93693 0.97157 1.22055 0.93475 0.98797 1.01515 1.21447 0.93275 0.92897 0.95889 0.87378 1.58733 1.66460 1.07444 1.03179 1.20539 0.76505 0.88147 0.82529 1.90506 1.48335 1.64936 1.37978 1.48057 1.59571 1.18993 1.08165 1.22797 0.97539 1.00105 0.85459 1.23174 0.96267 0.83599 0.99689 1.87926 1.76916 1.29287 1.36887 1.22988 0.93452 1.00952 0.84247 1.22249 0.96082 0.84514 0.96720 0.88563 1.22362 0.90611 0.91076 0.95958 1.86376 1.48301 1.54678 1.48884 0.92510 0.95761 0.95228 0.91849 0.93992 0.83257 0.84188 0.89847 0.87970 0.92457 0.85257 0.92680 0.85826 0.91554 0.91949 0.76546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.84 13.96 21.45 0.30 -58.54 16 2 C 0.00 0.27 5.47 84.65 0.46 0.73 16 3 Si 0.95 42.19 27.47 68.60 1.88 44.07 16 4 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 5 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 6 H -0.24 -9.56 6.54 99.48 0.65 -8.91 16 7 C -0.53 -29.69 9.66 25.60 0.25 -29.44 16 8 H 0.03 1.65 7.99 -2.91 -0.02 1.63 16 9 C 0.00 -0.21 3.81 29.85 0.11 -0.09 16 10 C -0.12 -4.36 4.49 30.60 0.14 -4.22 16 11 C 0.08 2.48 2.35 44.17 0.10 2.59 16 12 H 0.11 3.06 6.80 -2.39 -0.02 3.04 16 13 N -0.83 -25.52 8.94 -171.78 -1.54 -27.06 16 14 C 0.53 16.71 6.40 87.66 0.56 17.27 16 15 O -0.54 -18.65 11.23 19.67 0.22 -18.43 16 16 N -0.61 -16.02 3.00 -792.72 -2.38 -18.40 16 17 C 0.06 1.42 5.72 86.50 0.49 1.91 16 18 C 0.05 0.94 7.00 72.22 0.51 1.45 16 19 O -0.39 -8.42 10.74 -148.98 -1.60 -10.02 16 20 C 0.06 1.20 6.22 72.08 0.45 1.65 16 21 C 0.11 2.41 3.47 44.97 0.16 2.56 16 22 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 23 C 0.08 1.73 5.80 71.98 0.42 2.15 16 24 O -0.58 -14.21 10.70 -126.27 -1.35 -15.56 16 25 H 0.27 15.34 8.31 -92.70 -0.77 14.57 16 26 H 0.02 1.01 5.93 -2.39 -0.01 0.99 16 27 H 0.03 1.19 7.57 -2.39 -0.02 1.17 16 28 H 0.06 2.29 6.85 -2.39 -0.02 2.28 16 29 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.35 10.36 7.55 -89.70 -0.68 9.69 16 31 H 0.34 10.99 8.58 -89.70 -0.77 10.22 16 32 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 33 H 0.10 2.29 5.13 -2.39 -0.01 2.28 16 34 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.05 1.24 7.41 -2.39 -0.02 1.22 16 37 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.07 1.83 5.81 -7.52 -0.04 1.79 16 39 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.39 7.20 9.12 -74.06 -0.68 6.53 16 Total: -1.00 -70.43 311.21 -1.94 -72.37 By element: Atomic # 1 Polarization: 36.13 SS G_CDS: -1.13 Total: 35.00 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: 3.65 Total: -3.44 kcal Atomic # 7 Polarization: -100.39 SS G_CDS: -3.61 Total: -104.00 kcal Atomic # 8 Polarization: -41.27 SS G_CDS: -2.73 Total: -44.00 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 1.88 Total: 44.07 kcal Total: -70.43 -1.94 -72.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691542595.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.903 kcal (2) G-P(sol) polarization free energy of solvation -70.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds