Wall clock time and date at job start Mon Mar 30 2020 04:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86792 * 120.00163 * 2 1 4 4 H 1.48503 * 109.47262 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47222 * 299.99969 * 3 2 1 6 6 H 1.48493 * 109.47540 * 60.00042 * 3 2 1 7 7 C 1.37881 * 119.99464 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99614 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00183 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47113 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47485 * 180.02562 * 10 9 7 12 12 H 1.09007 * 109.46940 * 305.00079 * 11 10 9 13 13 N 1.46900 * 109.47355 * 64.99305 * 11 10 9 14 14 C 1.50694 * 109.47629 * 184.99970 * 11 10 9 15 15 O 1.21280 * 120.00375 * 260.00084 * 14 11 10 16 16 N 1.34783 * 120.00048 * 79.99260 * 14 11 10 17 17 C 1.46503 * 119.99748 * 180.02562 * 16 14 11 18 18 C 1.52997 * 109.46934 * 180.02562 * 17 16 14 19 19 O 1.42903 * 110.45567 * 64.29892 * 18 17 16 20 20 C 1.54508 * 110.51587 * 186.90640 * 18 17 16 21 21 C 1.54474 * 104.06343 * 118.78125 * 20 18 17 22 22 O 1.44429 * 104.80461 * 23.98516 * 21 20 18 23 23 C 1.44785 * 105.28947 * 319.45194 * 22 21 20 24 24 H 0.97003 * 120.00052 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47707 * 59.99657 * 9 7 2 26 26 H 1.08997 * 109.47038 * 299.99780 * 9 7 2 27 27 H 1.09004 * 109.47501 * 59.99277 * 10 9 7 28 28 H 1.09005 * 109.46858 * 300.00059 * 10 9 7 29 29 H 1.00894 * 111.00260 * 296.05539 * 13 11 10 30 30 H 1.00902 * 110.99715 * 60.00461 * 13 11 10 31 31 H 0.96995 * 120.00016 * 0.02562 * 16 14 11 32 32 H 1.09002 * 109.47082 * 60.00889 * 17 16 14 33 33 H 1.08999 * 109.47394 * 300.00288 * 17 16 14 34 34 H 0.96700 * 114.00311 * 300.70393 * 19 18 17 35 35 H 1.09000 * 110.51095 * 237.43303 * 20 18 17 36 36 H 1.09008 * 110.50710 * 0.14073 * 20 18 17 37 37 H 1.09003 * 110.37034 * 142.80944 * 21 20 18 38 38 H 1.08995 * 110.37414 * 265.14822 * 21 20 18 39 39 H 1.09002 * 110.42308 * 281.77095 * 23 22 21 40 40 H 1.09004 * 110.48252 * 159.33206 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4801 -4.9872 -0.0001 12 1 0.7876 -5.0073 0.8415 13 7 0.7286 -5.1182 -1.2555 14 6 2.4545 -6.1300 0.1237 15 8 2.7866 -6.7533 -0.8622 16 7 2.9571 -6.4594 1.3302 17 6 3.9048 -7.5700 1.4504 18 6 4.3166 -7.7328 2.9149 19 8 3.1904 -8.1050 3.7119 20 6 5.4437 -8.7813 3.0472 21 6 6.6261 -7.9880 3.6462 22 8 6.0140 -6.8690 4.3239 23 6 4.9491 -6.4280 3.4476 24 1 -0.4850 0.8401 -0.0004 25 1 0.6245 -2.5572 -0.8896 26 1 0.6239 -2.5567 0.8903 27 1 2.8719 -3.6044 0.8905 28 1 2.8717 -3.6044 -0.8895 29 1 0.0239 -4.4001 -1.3318 30 1 1.3486 -5.1023 -2.0514 31 1 2.6913 -5.9611 2.1188 32 1 4.7874 -7.3617 0.8455 33 1 3.4339 -8.4890 1.1015 34 1 2.4643 -7.4668 3.6891 35 1 5.1419 -9.5837 3.7204 36 1 5.7093 -9.1820 2.0688 37 1 7.1770 -8.6057 4.3554 38 1 7.2873 -7.6365 2.8542 39 1 5.3532 -5.8386 2.6246 40 1 4.2123 -5.8488 4.0042 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691559998.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:16 Heat of formation + Delta-G solvation = -145.807714 kcal Electronic energy + Delta-G solvation = -21396.617348 eV Core-core repulsion = 18017.709009 eV Total energy + Delta-G solvation = -3378.908339 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.57328 -39.38456 -36.77055 -35.56807 -34.38254 -32.89808 -31.83999 -29.95420 -29.43531 -27.16749 -25.63310 -23.87007 -23.01915 -20.89971 -20.79412 -19.91438 -17.88514 -17.30346 -16.73636 -16.39143 -16.18981 -15.61166 -15.47205 -14.99853 -14.59825 -14.47091 -14.10154 -13.86874 -13.48918 -13.21779 -13.11167 -12.85187 -12.63721 -12.20588 -12.00297 -11.82594 -11.72922 -11.23256 -11.14408 -10.98324 -10.70400 -10.60437 -10.05996 -9.99376 -9.94115 -9.36578 -9.25865 -9.19612 -8.48591 -8.26024 -6.12850 -4.16161 2.80805 3.02827 3.23483 3.31832 3.35363 3.52164 3.68834 4.07102 4.28776 4.35979 4.43132 4.73079 4.81572 4.94840 5.10683 5.14553 5.23593 5.28583 5.32782 5.35944 5.43964 5.50225 5.57177 5.62194 5.67967 6.19928 6.25714 6.36856 6.44090 6.80309 7.20034 7.29821 7.45838 7.52380 7.58349 7.83421 7.84725 8.25841 8.31766 8.90005 9.49221 10.98041 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.019491 B = 0.004015 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.193826 B = 6971.490723 C = 7923.768512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.137 4.137 11 C 0.075 3.925 12 H 0.097 0.903 13 N -0.831 5.831 14 C 0.528 3.472 15 O -0.534 6.534 16 N -0.739 5.739 17 C 0.101 3.899 18 C 0.091 3.909 19 O -0.545 6.545 20 C -0.141 4.141 21 C 0.044 3.956 22 O -0.367 6.367 23 C 0.019 3.981 24 H 0.261 0.739 25 H 0.018 0.982 26 H 0.019 0.981 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.355 0.645 30 H 0.346 0.654 31 H 0.398 0.602 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.379 0.621 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.064 0.936 39 H 0.076 0.924 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.615 -15.463 6.634 18.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.563 4.563 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.177 4.177 11 C -0.040 4.040 12 H 0.115 0.885 13 N -0.363 5.363 14 C 0.315 3.685 15 O -0.409 6.409 16 N -0.394 5.394 17 C -0.023 4.023 18 C 0.050 3.950 19 O -0.351 6.351 20 C -0.179 4.179 21 C -0.033 4.033 22 O -0.286 6.286 23 C -0.059 4.059 24 H 0.071 0.929 25 H 0.036 0.964 26 H 0.037 0.963 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.171 0.829 30 H 0.159 0.841 31 H 0.232 0.768 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.227 0.773 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.114 0.886 38 H 0.082 0.918 39 H 0.094 0.906 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 8.909 -16.951 6.507 20.225 hybrid contribution 0.281 2.608 -0.148 2.628 sum 9.191 -14.343 6.359 18.183 Atomic orbital electron populations 1.69956 1.06026 1.26735 1.50415 1.25012 0.94868 0.99339 0.95070 0.86529 0.80098 0.83659 0.77697 1.19758 1.20925 1.20908 1.21205 0.93044 0.90860 1.51153 0.92672 1.19108 0.93704 0.91107 0.97409 1.22392 0.99897 0.93946 1.01491 1.21481 0.94630 0.92156 0.95766 0.88495 1.58743 1.18459 1.55952 1.03141 1.20941 0.80959 0.84407 0.82218 1.90646 1.59953 1.53290 1.36999 1.45972 1.47615 1.35352 1.10412 1.21978 0.94046 0.91128 0.95146 1.22841 0.87868 0.95027 0.89313 1.86609 1.27631 1.50944 1.69897 1.22929 0.93105 0.98540 1.03320 1.23465 0.94959 0.87742 0.97102 1.89230 1.48034 1.48466 1.42842 1.24271 0.90898 0.95837 0.94866 0.92893 0.96371 0.96288 0.92576 0.92641 0.82927 0.84110 0.76758 0.90395 0.90234 0.77253 0.88783 0.89009 0.88551 0.91779 0.90633 0.88191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.60 13.29 55.43 0.74 -24.87 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.07 9.11 -34.44 -0.31 -14.38 16 8 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.02 0.56 4.74 -27.89 -0.13 0.43 16 10 C -0.14 -2.56 4.78 -26.73 -0.13 -2.69 16 11 C 0.07 1.20 3.21 -68.87 -0.22 0.97 16 12 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 13 N -0.83 -13.78 8.94 -5.66 -0.05 -13.83 16 14 C 0.53 8.10 7.08 -10.99 -0.08 8.02 16 15 O -0.53 -9.94 16.25 5.56 0.09 -9.85 16 16 N -0.74 -8.31 5.12 -60.29 -0.31 -8.62 16 17 C 0.10 1.03 4.57 -4.04 -0.02 1.02 16 18 C 0.09 0.82 1.14 -89.06 -0.10 0.72 16 19 O -0.54 -5.21 13.00 -35.23 -0.46 -5.67 16 20 C -0.14 -1.10 6.54 -25.17 -0.16 -1.27 16 21 C 0.04 0.35 7.63 37.93 0.29 0.64 16 22 O -0.37 -4.11 11.66 -35.23 -0.41 -4.52 16 23 C 0.02 0.18 6.20 37.93 0.24 0.41 16 24 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 25 H 0.02 0.44 6.87 -51.93 -0.36 0.09 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.36 5.92 7.55 -39.29 -0.30 5.62 16 30 H 0.35 5.84 8.58 -39.29 -0.34 5.50 16 31 H 0.40 3.56 7.39 -40.82 -0.30 3.26 16 32 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.38 2.56 8.25 45.56 0.38 2.94 16 35 H 0.09 0.76 8.00 -51.93 -0.42 0.34 16 36 H 0.09 0.58 7.73 -51.92 -0.40 0.18 16 37 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.72 7.87 -51.93 -0.41 0.31 16 40 H 0.10 0.86 8.09 -51.93 -0.42 0.44 16 LS Contribution 331.07 15.07 4.99 4.99 Total: -1.00 -32.83 331.07 -6.65 -39.47 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -5.48 Total: 11.55 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: -0.73 Total: -4.60 kcal Atomic # 7 Polarization: -47.69 SS G_CDS: 0.38 Total: -47.32 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -0.78 Total: -20.05 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.83 -6.65 -39.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691559998.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.333 kcal (2) G-P(sol) polarization free energy of solvation -32.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds