Wall clock time and date at job start Mon Mar 30 2020 04:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86792 * 120.00163 * 2 1 4 4 H 1.48503 * 109.47262 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47222 * 299.99969 * 3 2 1 6 6 H 1.48493 * 109.47540 * 60.00042 * 3 2 1 7 7 C 1.37881 * 119.99464 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99614 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00183 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47113 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47485 * 180.02562 * 10 9 7 12 12 H 1.09007 * 109.46940 * 305.00079 * 11 10 9 13 13 N 1.46900 * 109.47355 * 64.99305 * 11 10 9 14 14 C 1.50694 * 109.47629 * 184.99970 * 11 10 9 15 15 O 1.21280 * 120.00375 * 260.00084 * 14 11 10 16 16 N 1.34783 * 120.00048 * 79.99260 * 14 11 10 17 17 C 1.46503 * 119.99748 * 180.02562 * 16 14 11 18 18 C 1.52997 * 109.46934 * 180.02562 * 17 16 14 19 19 O 1.42903 * 110.45567 * 64.29892 * 18 17 16 20 20 C 1.54508 * 110.51587 * 186.90640 * 18 17 16 21 21 C 1.54474 * 104.06343 * 118.78125 * 20 18 17 22 22 O 1.44429 * 104.80461 * 23.98516 * 21 20 18 23 23 C 1.44785 * 105.28947 * 319.45194 * 22 21 20 24 24 H 0.97003 * 120.00052 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47707 * 59.99657 * 9 7 2 26 26 H 1.08997 * 109.47038 * 299.99780 * 9 7 2 27 27 H 1.09004 * 109.47501 * 59.99277 * 10 9 7 28 28 H 1.09005 * 109.46858 * 300.00059 * 10 9 7 29 29 H 1.00894 * 111.00260 * 296.05539 * 13 11 10 30 30 H 1.00902 * 110.99715 * 60.00461 * 13 11 10 31 31 H 0.96995 * 120.00016 * 0.02562 * 16 14 11 32 32 H 1.09002 * 109.47082 * 60.00889 * 17 16 14 33 33 H 1.08999 * 109.47394 * 300.00288 * 17 16 14 34 34 H 0.96700 * 114.00311 * 300.70393 * 19 18 17 35 35 H 1.09000 * 110.51095 * 237.43303 * 20 18 17 36 36 H 1.09008 * 110.50710 * 0.14073 * 20 18 17 37 37 H 1.09003 * 110.37034 * 142.80944 * 21 20 18 38 38 H 1.08995 * 110.37414 * 265.14822 * 21 20 18 39 39 H 1.09002 * 110.42308 * 281.77095 * 23 22 21 40 40 H 1.09004 * 110.48252 * 159.33206 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4801 -4.9872 -0.0001 12 1 0.7876 -5.0073 0.8415 13 7 0.7286 -5.1182 -1.2555 14 6 2.4545 -6.1300 0.1237 15 8 2.7866 -6.7533 -0.8622 16 7 2.9571 -6.4594 1.3302 17 6 3.9048 -7.5700 1.4504 18 6 4.3166 -7.7328 2.9149 19 8 3.1904 -8.1050 3.7119 20 6 5.4437 -8.7813 3.0472 21 6 6.6261 -7.9880 3.6462 22 8 6.0140 -6.8690 4.3239 23 6 4.9491 -6.4280 3.4476 24 1 -0.4850 0.8401 -0.0004 25 1 0.6245 -2.5572 -0.8896 26 1 0.6239 -2.5567 0.8903 27 1 2.8719 -3.6044 0.8905 28 1 2.8717 -3.6044 -0.8895 29 1 0.0239 -4.4001 -1.3318 30 1 1.3486 -5.1023 -2.0514 31 1 2.6913 -5.9611 2.1188 32 1 4.7874 -7.3617 0.8455 33 1 3.4339 -8.4890 1.1015 34 1 2.4643 -7.4668 3.6891 35 1 5.1419 -9.5837 3.7204 36 1 5.7093 -9.1820 2.0688 37 1 7.1770 -8.6057 4.3554 38 1 7.2873 -7.6365 2.8542 39 1 5.3532 -5.8386 2.6246 40 1 4.2123 -5.8488 4.0042 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691559998.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:16 Heat of formation + Delta-G solvation = -174.287510 kcal Electronic energy + Delta-G solvation = -21397.852325 eV Core-core repulsion = 18017.709009 eV Total energy + Delta-G solvation = -3380.143316 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.45614 -40.45596 -37.60032 -37.03300 -35.39744 -34.83285 -32.58974 -31.67988 -30.22165 -28.43503 -26.95018 -25.27534 -23.87565 -22.35044 -21.67569 -21.11675 -19.07936 -18.36093 -18.05796 -17.55875 -17.09761 -16.67477 -16.43976 -16.34620 -15.96799 -15.76457 -15.37042 -15.02590 -14.64347 -14.43549 -14.17797 -14.04329 -13.65982 -13.47901 -13.35699 -12.95510 -12.73508 -12.67144 -12.49873 -12.46178 -11.93131 -11.79776 -11.70614 -11.33086 -11.27904 -10.77286 -10.66463 -10.56133 -10.23508 -9.64640 -8.21482 -6.31353 1.38682 1.40866 1.51777 1.57215 1.99719 2.40066 2.84581 3.04734 3.12725 3.32031 3.59941 3.72172 3.75647 3.77506 4.10110 4.13808 4.22699 4.25149 4.41761 4.58472 4.61685 4.66947 4.68676 4.77489 4.84389 4.89011 4.99955 5.09767 5.28758 5.47850 5.66597 5.68638 5.81563 6.05996 6.21668 6.41118 6.47476 6.61516 6.84774 7.15964 7.38009 8.89385 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.019491 B = 0.004015 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.193826 B = 6971.490723 C = 7923.768512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.006 3.994 3 Si 0.957 3.043 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.278 1.278 7 C -0.543 4.543 8 H 0.055 0.945 9 C 0.029 3.971 10 C -0.121 4.121 11 C 0.080 3.920 12 H 0.113 0.887 13 N -0.831 5.831 14 C 0.530 3.470 15 O -0.568 6.568 16 N -0.720 5.720 17 C 0.106 3.894 18 C 0.100 3.900 19 O -0.556 6.556 20 C -0.140 4.140 21 C 0.039 3.961 22 O -0.394 6.394 23 C 0.015 3.985 24 H 0.263 0.737 25 H 0.002 0.998 26 H 0.004 0.996 27 H 0.069 0.931 28 H 0.044 0.956 29 H 0.353 0.647 30 H 0.343 0.657 31 H 0.411 0.589 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.390 0.610 35 H 0.092 0.908 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.693 -15.777 7.356 19.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.782 3.218 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.203 1.203 7 C -0.581 4.581 8 H 0.073 0.927 9 C -0.009 4.009 10 C -0.161 4.161 11 C -0.035 4.035 12 H 0.131 0.869 13 N -0.363 5.363 14 C 0.317 3.683 15 O -0.446 6.446 16 N -0.374 5.374 17 C -0.018 4.018 18 C 0.058 3.942 19 O -0.364 6.364 20 C -0.178 4.178 21 C -0.037 4.037 22 O -0.313 6.313 23 C -0.062 4.062 24 H 0.072 0.928 25 H 0.020 0.980 26 H 0.022 0.978 27 H 0.087 0.913 28 H 0.062 0.938 29 H 0.168 0.832 30 H 0.156 0.844 31 H 0.248 0.752 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.240 0.760 35 H 0.110 0.890 36 H 0.126 0.874 37 H 0.128 0.872 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 9.995 -17.270 7.271 21.237 hybrid contribution -0.060 2.674 -0.344 2.697 sum 9.935 -14.596 6.926 18.967 Atomic orbital electron populations 1.70063 1.07452 1.27657 1.51475 1.25838 0.95692 1.02891 0.94824 0.85520 0.79068 0.79458 0.77738 1.18988 1.20684 1.20344 1.21653 0.93357 0.92458 1.50628 0.92696 1.18981 0.94076 0.91990 0.95809 1.22139 0.98773 0.93635 1.01540 1.21434 0.94791 0.91184 0.96084 0.86940 1.58765 1.18424 1.55692 1.03398 1.20710 0.80734 0.84015 0.82842 1.90638 1.61124 1.54474 1.38390 1.45795 1.46725 1.35235 1.09668 1.22028 0.93511 0.90158 0.96134 1.22765 0.87982 0.95344 0.88118 1.86601 1.28204 1.51698 1.69930 1.22978 0.92556 0.98115 1.04184 1.23666 0.95120 0.87205 0.97719 1.89200 1.48619 1.49556 1.43905 1.24336 0.90910 0.96067 0.94846 0.92771 0.98002 0.97767 0.91265 0.93766 0.83197 0.84358 0.75186 0.90322 0.90862 0.76003 0.88971 0.87446 0.87214 0.90695 0.90714 0.87521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.41 13.29 21.45 0.28 -53.12 16 2 C 0.01 0.33 5.46 84.66 0.46 0.79 16 3 Si 0.96 42.69 29.54 68.60 2.03 44.71 16 4 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 6 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 7 C -0.54 -29.02 9.11 25.60 0.23 -28.78 16 8 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 9 C 0.03 1.35 4.74 29.85 0.14 1.49 16 10 C -0.12 -4.41 4.78 30.59 0.15 -4.26 16 11 C 0.08 2.48 3.21 44.17 0.14 2.62 16 12 H 0.11 3.13 8.14 -2.38 -0.02 3.11 16 13 N -0.83 -27.27 8.94 -171.80 -1.54 -28.81 16 14 C 0.53 15.54 7.08 87.65 0.62 16.17 16 15 O -0.57 -20.63 16.25 -3.03 -0.05 -20.68 16 16 N -0.72 -14.84 5.12 -463.06 -2.37 -17.21 16 17 C 0.11 1.96 4.57 86.38 0.39 2.36 16 18 C 0.10 1.59 1.14 -9.78 -0.01 1.58 16 19 O -0.56 -9.58 13.00 -148.98 -1.94 -11.52 16 20 C -0.14 -1.92 6.54 31.61 0.21 -1.71 16 21 C 0.04 0.55 7.63 72.48 0.55 1.11 16 22 O -0.39 -8.22 11.66 -148.98 -1.74 -9.96 16 23 C 0.02 0.27 6.20 72.48 0.45 0.72 16 24 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 25 H 0.00 0.08 6.87 -2.39 -0.02 0.07 16 26 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 27 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 28 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 29 H 0.35 11.80 7.55 -89.70 -0.68 11.12 16 30 H 0.34 11.58 8.58 -89.69 -0.77 10.81 16 31 H 0.41 6.41 7.39 -92.71 -0.69 5.73 16 32 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.39 4.47 8.25 -74.06 -0.61 3.85 16 35 H 0.09 1.32 8.00 -2.39 -0.02 1.30 16 36 H 0.11 1.11 7.73 -2.38 -0.02 1.09 16 37 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.07 1.29 7.87 -2.39 -0.02 1.27 16 40 H 0.11 1.63 8.09 -2.38 -0.02 1.61 16 Total: -1.00 -69.01 331.07 -3.64 -72.65 By element: Atomic # 1 Polarization: 33.52 SS G_CDS: -1.66 Total: 31.86 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: 3.34 Total: -7.92 kcal Atomic # 7 Polarization: -95.52 SS G_CDS: -3.62 Total: -99.14 kcal Atomic # 8 Polarization: -38.43 SS G_CDS: -3.72 Total: -42.16 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.71 kcal Total: -69.01 -3.64 -72.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691559998.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.638 kcal (2) G-P(sol) polarization free energy of solvation -69.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds