Wall clock time and date at job start Mon Mar 30 2020 04:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.47563 * 305.00337 * 11 10 9 13 13 N 1.46910 * 109.47127 * 65.00091 * 11 10 9 14 14 C 1.50700 * 109.47798 * 185.00026 * 11 10 9 15 15 O 1.21283 * 120.00117 * 260.00788 * 14 11 10 16 16 N 1.34772 * 119.99971 * 79.99728 * 14 11 10 17 17 C 1.46496 * 120.00222 * 180.02562 * 16 14 11 18 18 C 1.52999 * 109.47578 * 180.02562 * 17 16 14 19 19 O 1.42905 * 110.45326 * 302.60281 * 18 17 16 20 20 C 1.54507 * 110.51373 * 179.97438 * 18 17 16 21 21 C 1.54479 * 104.06275 * 241.35139 * 20 18 17 22 22 O 1.44422 * 104.80387 * 336.02453 * 21 20 18 23 23 C 1.44419 * 105.27798 * 40.50845 * 22 21 20 24 24 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 26 26 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 27 27 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 28 28 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 29 29 H 1.00894 * 110.99558 * 296.04896 * 13 11 10 30 30 H 1.00892 * 110.99957 * 60.00190 * 13 11 10 31 31 H 0.97003 * 120.00400 * 0.02562 * 16 14 11 32 32 H 1.09009 * 109.47041 * 299.99863 * 17 16 14 33 33 H 1.09005 * 109.47453 * 60.00054 * 17 16 14 34 34 H 0.96698 * 114.00257 * 59.29943 * 19 18 17 35 35 H 1.08995 * 110.51271 * 0.02562 * 20 18 17 36 36 H 1.09008 * 110.50983 * 122.70893 * 20 18 17 37 37 H 1.08996 * 110.36894 * 94.85306 * 21 20 18 38 38 H 1.08996 * 110.37549 * 217.07890 * 21 20 18 39 39 H 1.09004 * 110.37434 * 200.66048 * 23 22 21 40 40 H 1.08998 * 110.37422 * 78.32187 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5513 -2.6368 -0.0001 12 1 5.9148 -2.0473 -0.8419 13 7 6.0411 -2.0516 1.2552 14 6 6.0537 -4.0522 -0.1241 15 8 6.4277 -4.6515 0.8618 16 7 6.0871 -4.6522 -1.3304 17 6 6.5750 -6.0283 -1.4509 18 6 6.5094 -6.4663 -2.9154 19 8 5.1748 -6.3491 -3.4125 20 6 7.0199 -7.9164 -3.0701 21 6 8.2433 -7.7860 -4.0043 22 8 8.0173 -6.5640 -4.7400 23 6 7.4849 -5.6313 -3.7743 24 1 -0.4850 0.8401 -0.0004 25 1 3.8751 -0.6798 -0.8895 26 1 3.8745 -0.6810 0.8905 27 1 3.6577 -3.1507 0.8897 28 1 3.6584 -3.1504 -0.8902 29 1 5.7717 -1.0823 1.3315 30 1 5.7176 -2.5806 2.0511 31 1 5.7882 -4.1728 -2.1190 32 1 7.6066 -6.0799 -1.1025 33 1 5.9535 -6.6884 -0.8457 34 1 4.8153 -5.4526 -3.3667 35 1 7.3185 -8.3214 -2.1033 36 1 6.2549 -8.5438 -3.5279 37 1 9.1606 -7.7130 -3.4201 38 1 8.2940 -8.6364 -4.6842 39 1 6.9517 -4.8256 -4.2790 40 1 8.2858 -5.2279 -3.1549 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691560000.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:19 Heat of formation + Delta-G solvation = -141.206992 kcal Electronic energy + Delta-G solvation = -21385.576223 eV Core-core repulsion = 18006.867386 eV Total energy + Delta-G solvation = -3378.708837 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.63155 -39.47469 -36.83933 -35.71473 -34.38362 -32.85092 -31.90660 -30.37807 -29.53579 -27.37941 -25.79859 -23.80617 -23.00538 -20.93645 -20.65437 -20.01003 -17.96886 -17.38747 -16.77940 -16.76643 -16.32338 -15.66517 -15.50377 -15.09041 -14.64489 -14.30656 -14.21173 -13.88403 -13.53032 -13.49664 -13.00418 -12.92421 -12.72690 -12.66255 -12.05586 -11.87139 -11.86560 -11.47525 -11.23204 -11.02237 -10.63959 -10.43327 -10.14593 -9.98319 -9.93196 -9.52972 -9.35825 -9.24966 -8.65891 -8.40325 -6.15156 -4.15168 2.73272 2.95856 3.21920 3.30710 3.31365 3.47552 3.67768 4.02848 4.26064 4.34164 4.38366 4.68646 4.76120 4.86408 4.96586 5.08352 5.17553 5.21143 5.28341 5.30740 5.35709 5.41116 5.51538 5.54420 5.60692 6.05985 6.19566 6.25379 6.31784 6.58762 7.03345 7.15320 7.18302 7.22692 7.44014 7.61901 7.71141 8.24079 8.40537 8.88700 9.45805 10.98021 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.025669 B = 0.003745 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.555221 B = 7474.932491 C = 7902.119999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.067 3.933 3 Si 0.882 3.118 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.525 4.525 8 H 0.071 0.929 9 C -0.010 4.010 10 C -0.130 4.130 11 C 0.072 3.928 12 H 0.097 0.903 13 N -0.831 5.831 14 C 0.529 3.471 15 O -0.532 6.532 16 N -0.737 5.737 17 C 0.102 3.898 18 C 0.091 3.909 19 O -0.542 6.542 20 C -0.142 4.142 21 C 0.045 3.955 22 O -0.367 6.367 23 C 0.020 3.980 24 H 0.264 0.736 25 H 0.014 0.986 26 H 0.016 0.984 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.352 0.648 30 H 0.348 0.652 31 H 0.397 0.603 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.380 0.620 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.063 0.937 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.233 -12.050 -6.966 21.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.134 4.134 3 Si 0.709 3.291 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.563 4.563 8 H 0.089 0.911 9 C -0.048 4.048 10 C -0.169 4.169 11 C -0.043 4.043 12 H 0.115 0.885 13 N -0.363 5.363 14 C 0.315 3.685 15 O -0.407 6.407 16 N -0.392 5.392 17 C -0.023 4.023 18 C 0.049 3.951 19 O -0.349 6.349 20 C -0.180 4.180 21 C -0.032 4.032 22 O -0.286 6.286 23 C -0.058 4.058 24 H 0.074 0.926 25 H 0.032 0.968 26 H 0.034 0.966 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.167 0.833 30 H 0.162 0.838 31 H 0.232 0.768 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.229 0.771 35 H 0.110 0.890 36 H 0.113 0.887 37 H 0.082 0.918 38 H 0.115 0.885 39 H 0.117 0.883 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 17.209 -13.132 -6.832 22.700 hybrid contribution -1.052 1.851 0.129 2.133 sum 16.157 -11.281 -6.703 20.814 Atomic orbital electron populations 1.69910 1.06355 1.27061 1.50488 1.25050 0.94762 0.99251 0.94384 0.86756 0.80291 0.83530 0.78531 1.20242 1.21319 1.18999 1.21057 0.89187 0.94553 1.51533 0.91055 1.19574 0.97608 0.91263 0.96335 1.22208 0.91082 1.01214 1.02427 1.21522 0.95754 0.91404 0.95667 0.88478 1.58737 1.66703 1.07531 1.03338 1.20825 0.76568 0.88791 0.82272 1.90657 1.46942 1.66154 1.36929 1.45926 1.68102 1.14874 1.10306 1.21980 1.01034 0.83784 0.95475 1.22840 0.84067 0.96540 0.91667 1.86636 1.27701 1.34950 1.85580 1.22935 0.98649 0.94737 1.01648 1.23464 0.96607 0.88467 0.94689 1.89166 1.84492 1.22657 1.32243 1.24201 0.96607 0.93288 0.91657 0.92584 0.96768 0.96586 0.91973 0.91897 0.83337 0.83802 0.76819 0.90373 0.90218 0.77144 0.88980 0.88675 0.91827 0.88510 0.88316 0.90926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.04 13.96 55.43 0.77 -26.27 16 2 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 3 Si 0.88 20.73 27.47 -169.99 -4.67 16.06 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.27 -5.88 6.54 56.52 0.37 -5.51 16 7 C -0.53 -14.26 9.66 -34.44 -0.33 -14.59 16 8 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 9 C -0.01 -0.22 3.81 -27.88 -0.11 -0.33 16 10 C -0.13 -2.30 4.78 -26.74 -0.13 -2.43 16 11 C 0.07 1.07 3.21 -68.86 -0.22 0.85 16 12 H 0.10 1.29 8.14 -51.93 -0.42 0.86 16 13 N -0.83 -12.78 8.94 -5.65 -0.05 -12.84 16 14 C 0.53 7.75 7.08 -10.99 -0.08 7.68 16 15 O -0.53 -9.58 16.25 5.55 0.09 -9.49 16 16 N -0.74 -7.91 5.18 -60.29 -0.31 -8.22 16 17 C 0.10 1.00 4.55 -4.04 -0.02 0.98 16 18 C 0.09 0.79 1.14 -89.05 -0.10 0.69 16 19 O -0.54 -5.45 13.00 -35.23 -0.46 -5.91 16 20 C -0.14 -1.08 6.54 -25.16 -0.16 -1.24 16 21 C 0.04 0.33 7.63 37.93 0.29 0.62 16 22 O -0.37 -3.79 11.65 -35.23 -0.41 -4.20 16 23 C 0.02 0.17 6.55 37.93 0.25 0.42 16 24 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 25 H 0.01 0.30 7.57 -51.93 -0.39 -0.10 16 26 H 0.02 0.34 5.93 -51.93 -0.31 0.04 16 27 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.35 5.27 7.55 -39.29 -0.30 4.98 16 30 H 0.35 5.52 8.58 -39.30 -0.34 5.18 16 31 H 0.40 3.30 7.25 -40.82 -0.30 3.00 16 32 H 0.08 0.76 8.08 -51.92 -0.42 0.34 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.38 2.86 7.80 45.56 0.36 3.21 16 35 H 0.09 0.56 7.73 -51.93 -0.40 0.16 16 36 H 0.09 0.78 8.00 -51.92 -0.42 0.36 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.10 0.74 8.09 -51.93 -0.42 0.32 16 40 H 0.07 0.57 7.83 -51.93 -0.41 0.16 16 LS Contribution 327.16 15.07 4.93 4.93 Total: -1.00 -33.78 327.16 -6.28 -40.06 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -5.46 Total: 11.45 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: -0.71 Total: -5.57 kcal Atomic # 7 Polarization: -47.74 SS G_CDS: 0.41 Total: -47.33 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.78 Total: -19.60 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.67 Total: 16.06 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.78 -6.28 -40.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691560000.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.147 kcal (2) G-P(sol) polarization free energy of solvation -33.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds