Wall clock time and date at job start Mon Mar 30 2020 04:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99774 * 2 1 4 4 H 1.48504 * 109.47209 * 269.99978 * 3 2 1 5 5 H 1.48506 * 109.47294 * 29.99826 * 3 2 1 6 6 H 1.48501 * 109.47275 * 149.99729 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00205 * 359.72747 * 7 2 1 9 9 C 1.50706 * 120.00436 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.72505 * 9 7 2 11 11 C 1.52996 * 109.46929 * 179.97438 * 10 9 7 12 12 H 1.09006 * 109.47486 * 304.99942 * 11 10 9 13 13 N 1.46899 * 109.47415 * 65.00517 * 11 10 9 14 14 C 1.50700 * 109.47032 * 185.00304 * 11 10 9 15 15 O 1.21287 * 120.00103 * 260.00250 * 14 11 10 16 16 N 1.34778 * 120.00347 * 79.99627 * 14 11 10 17 17 C 1.46496 * 119.99982 * 180.02562 * 16 14 11 18 18 C 1.54157 * 109.06398 * 275.99508 * 17 16 14 19 19 O 1.40154 * 108.56243 * 161.61466 * 18 17 16 20 20 C 1.44602 * 117.04361 * 93.09151 * 19 18 17 21 21 C 1.54062 * 111.99373 * 318.63389 * 20 19 18 22 22 O 1.40096 * 112.65036 * 318.95809 * 21 20 19 23 23 C 1.44204 * 113.22854 * 93.04048 * 22 21 20 24 24 H 0.96995 * 120.00207 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 26 26 H 1.08998 * 109.47012 * 59.72028 * 9 7 2 27 27 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 28 28 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 29 29 H 1.00910 * 110.99485 * 296.04674 * 13 11 10 30 30 H 1.00897 * 111.00222 * 59.99157 * 13 11 10 31 31 H 0.97006 * 119.99721 * 0.02562 * 16 14 11 32 32 H 1.08993 * 109.05292 * 35.00601 * 17 16 14 33 33 H 1.09004 * 109.62047 * 281.41098 * 18 17 16 34 34 H 1.09002 * 109.61426 * 41.95095 * 18 17 16 35 35 H 1.09001 * 108.97096 * 197.98808 * 20 19 18 36 36 H 1.09000 * 108.91325 * 79.24029 * 20 19 18 37 37 H 1.09001 * 108.84125 * 198.14391 * 21 20 19 38 38 H 1.08991 * 108.76015 * 79.72049 * 21 20 19 39 39 H 1.08999 * 109.05552 * 159.62435 * 23 22 21 40 40 H 1.09000 * 109.00466 * 40.67028 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 1.4647 -2.1293 0.0054 9 6 3.5117 -1.1939 0.0011 10 6 4.0217 -2.6364 0.0086 11 6 5.5517 -2.6362 0.0085 12 1 5.9150 -2.0511 -0.8364 13 7 6.0414 -2.0445 1.2607 14 6 6.0541 -4.0522 -0.1081 15 8 6.4282 -4.6464 0.8809 16 7 6.0876 -4.6586 -1.3113 17 6 6.5755 -6.0352 -1.4245 18 6 8.1137 -6.0176 -1.5249 19 8 8.5959 -7.2957 -1.2112 20 6 8.8101 -8.2065 -2.3138 21 6 7.6761 -8.1302 -3.3538 22 8 6.4094 -8.0269 -2.7643 23 6 5.9668 -6.6641 -2.6023 24 1 -0.4850 0.8400 -0.0004 25 1 3.8752 -0.6845 -0.8913 26 1 3.8746 -0.6756 0.8886 27 1 3.6580 -3.1457 0.9010 28 1 3.6588 -3.1546 -0.8790 29 1 5.7719 -1.0747 1.3320 30 1 5.7179 -2.5693 2.0594 31 1 5.7886 -4.1833 -2.1024 32 1 6.2832 -6.5907 -0.5334 33 1 8.4112 -5.7517 -2.5393 34 1 8.5181 -5.2914 -0.8198 35 1 8.8683 -9.2238 -1.9268 36 1 9.7537 -7.9577 -2.7993 37 1 7.7046 -9.0274 -3.9722 38 1 7.8409 -7.2599 -3.9889 39 1 4.8826 -6.6528 -2.4914 40 1 6.2394 -6.0944 -3.4907 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691560079.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:45 Heat of formation + Delta-G solvation = -127.206540 kcal Electronic energy + Delta-G solvation = -21478.765977 eV Core-core repulsion = 18100.664245 eV Total energy + Delta-G solvation = -3378.101732 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.64670 -39.33757 -36.96442 -35.93972 -35.17902 -32.83373 -31.38363 -30.34853 -29.15096 -26.98762 -26.70703 -23.91740 -22.50411 -21.61550 -20.60071 -20.00508 -17.90353 -17.43647 -17.28990 -16.73265 -16.28159 -15.91163 -15.22734 -14.89726 -14.73455 -14.37827 -14.24147 -14.20597 -14.04127 -13.49652 -13.34698 -12.87355 -12.71103 -12.50807 -11.91125 -11.81230 -11.47687 -11.27449 -11.00517 -10.87495 -10.40742 -10.40455 -10.11508 -9.97722 -9.91147 -9.44789 -9.34123 -9.05564 -8.64693 -8.35793 -6.13994 -4.13855 2.74639 2.78692 3.22670 3.31499 3.32415 3.58557 3.61961 4.29007 4.35257 4.37946 4.55335 4.67018 4.81213 4.91002 4.95148 5.01193 5.07292 5.14617 5.18856 5.35171 5.41126 5.41932 5.55829 5.63298 5.79181 6.09842 6.28656 6.29660 6.61870 6.73817 7.03937 7.06066 7.18087 7.27327 7.52897 7.63993 7.74831 8.32919 8.42073 8.89940 9.47069 10.99223 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.033312 B = 0.003579 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.325982 B = 7821.732287 C = 8295.555181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.067 3.933 3 Si 0.882 3.118 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.525 4.525 8 H 0.071 0.929 9 C -0.011 4.011 10 C -0.130 4.130 11 C 0.073 3.927 12 H 0.097 0.903 13 N -0.831 5.831 14 C 0.527 3.473 15 O -0.527 6.527 16 N -0.727 5.727 17 C 0.084 3.916 18 C 0.060 3.940 19 O -0.374 6.374 20 C 0.030 3.970 21 C 0.023 3.977 22 O -0.355 6.355 23 C 0.051 3.949 24 H 0.264 0.736 25 H 0.014 0.986 26 H 0.016 0.984 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.351 0.649 30 H 0.349 0.651 31 H 0.402 0.598 32 H 0.105 0.895 33 H 0.049 0.951 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.061 0.939 37 H 0.098 0.902 38 H 0.054 0.946 39 H 0.105 0.895 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.854 -12.205 -8.936 22.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.135 4.135 3 Si 0.709 3.291 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.563 4.563 8 H 0.089 0.911 9 C -0.048 4.048 10 C -0.170 4.170 11 C -0.042 4.042 12 H 0.115 0.885 13 N -0.363 5.363 14 C 0.314 3.686 15 O -0.401 6.401 16 N -0.384 5.384 17 C -0.021 4.021 18 C -0.018 4.018 19 O -0.291 6.291 20 C -0.047 4.047 21 C -0.055 4.055 22 O -0.271 6.271 23 C -0.026 4.026 24 H 0.074 0.926 25 H 0.032 0.968 26 H 0.034 0.966 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.166 0.834 30 H 0.162 0.838 31 H 0.237 0.763 32 H 0.123 0.877 33 H 0.068 0.932 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.079 0.921 37 H 0.115 0.885 38 H 0.072 0.928 39 H 0.123 0.877 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 17.641 -12.931 -8.238 23.372 hybrid contribution -0.791 1.604 -0.651 1.903 sum 16.850 -11.326 -8.889 22.164 Atomic orbital electron populations 1.69909 1.06351 1.27045 1.50592 1.25048 0.94761 0.99248 0.94408 0.86756 0.80319 0.83527 0.78501 1.20279 1.21328 1.18966 1.21067 0.89225 0.94548 1.51417 0.91061 1.19577 0.97571 0.91332 0.96327 1.22209 0.91167 1.01153 1.02429 1.21509 0.95703 0.91364 0.95664 0.88485 1.58740 1.66709 1.07463 1.03394 1.20866 0.76572 0.88769 0.82427 1.90681 1.46657 1.66143 1.36588 1.45888 1.67734 1.14235 1.10528 1.21198 0.95071 0.84099 1.01768 1.22761 0.92662 0.85581 1.00835 1.87565 1.85242 1.23514 1.32807 1.23844 0.96959 0.94826 0.89080 1.23020 0.84442 1.03061 0.94962 1.87823 1.32102 1.25011 1.82213 1.21951 1.00972 0.83034 0.96674 0.92601 0.96785 0.96560 0.91960 0.91892 0.83392 0.83766 0.76343 0.87714 0.93229 0.88624 0.88577 0.92055 0.88451 0.92756 0.87731 0.92247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.18 13.96 55.43 0.77 -26.40 16 2 C 0.07 1.89 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 20.83 27.47 -169.99 -4.67 16.16 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.27 -5.91 6.53 56.52 0.37 -5.54 16 7 C -0.52 -14.35 9.66 -34.44 -0.33 -14.68 16 8 H 0.07 2.12 7.99 -52.49 -0.42 1.71 16 9 C -0.01 -0.23 3.81 -27.88 -0.11 -0.34 16 10 C -0.13 -2.36 4.78 -26.73 -0.13 -2.48 16 11 C 0.07 1.11 3.21 -68.87 -0.22 0.89 16 12 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 13 N -0.83 -13.09 8.94 -5.65 -0.05 -13.14 16 14 C 0.53 8.06 6.92 -10.98 -0.08 7.99 16 15 O -0.53 -9.92 15.90 5.55 0.09 -9.83 16 16 N -0.73 -8.42 5.03 -56.16 -0.28 -8.70 16 17 C 0.08 0.97 2.40 -70.32 -0.17 0.80 16 18 C 0.06 0.67 5.98 37.76 0.23 0.90 16 19 O -0.37 -4.55 10.29 -46.29 -0.48 -5.02 16 20 C 0.03 0.24 7.14 37.71 0.27 0.51 16 21 C 0.02 0.17 6.11 37.71 0.23 0.40 16 22 O -0.36 -3.69 10.50 -46.15 -0.48 -4.17 16 23 C 0.05 0.47 5.58 34.16 0.19 0.66 16 24 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 25 H 0.01 0.30 7.58 -51.93 -0.39 -0.10 16 26 H 0.02 0.35 5.91 -51.93 -0.31 0.05 16 27 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 29 H 0.35 5.37 7.55 -39.29 -0.30 5.07 16 30 H 0.35 5.67 8.58 -39.29 -0.34 5.34 16 31 H 0.40 3.58 8.57 -40.82 -0.35 3.23 16 32 H 0.10 1.55 7.55 -51.93 -0.39 1.16 16 33 H 0.05 0.43 7.06 -51.93 -0.37 0.06 16 34 H 0.10 1.23 8.01 -51.93 -0.42 0.82 16 35 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.05 0.33 6.74 -51.93 -0.35 -0.02 16 39 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.06 0.42 7.48 -51.93 -0.39 0.03 16 LS Contribution 322.22 15.07 4.86 4.86 Total: -1.00 -33.46 322.22 -6.60 -40.06 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -6.14 Total: 9.74 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: -0.21 Total: -3.55 kcal Atomic # 7 Polarization: -48.68 SS G_CDS: 0.44 Total: -48.24 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: -0.87 Total: -19.03 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.67 Total: 16.16 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.46 -6.60 -40.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691560079.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.147 kcal (2) G-P(sol) polarization free energy of solvation -33.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds