Wall clock time and date at job start Mon Mar 30 2020 04:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99774 * 2 1 4 4 H 1.48504 * 109.47209 * 269.99978 * 3 2 1 5 5 H 1.48506 * 109.47294 * 29.99826 * 3 2 1 6 6 H 1.48501 * 109.47275 * 149.99729 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00205 * 359.72747 * 7 2 1 9 9 C 1.50706 * 120.00436 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.72505 * 9 7 2 11 11 C 1.52996 * 109.46929 * 179.97438 * 10 9 7 12 12 H 1.09006 * 109.47486 * 304.99942 * 11 10 9 13 13 N 1.46899 * 109.47415 * 65.00517 * 11 10 9 14 14 C 1.50700 * 109.47032 * 185.00304 * 11 10 9 15 15 O 1.21287 * 120.00103 * 260.00250 * 14 11 10 16 16 N 1.34778 * 120.00347 * 79.99627 * 14 11 10 17 17 C 1.46496 * 119.99982 * 180.02562 * 16 14 11 18 18 C 1.54157 * 109.06398 * 275.99508 * 17 16 14 19 19 O 1.40154 * 108.56243 * 161.61466 * 18 17 16 20 20 C 1.44602 * 117.04361 * 93.09151 * 19 18 17 21 21 C 1.54062 * 111.99373 * 318.63389 * 20 19 18 22 22 O 1.40096 * 112.65036 * 318.95809 * 21 20 19 23 23 C 1.44204 * 113.22854 * 93.04048 * 22 21 20 24 24 H 0.96995 * 120.00207 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 26 26 H 1.08998 * 109.47012 * 59.72028 * 9 7 2 27 27 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 28 28 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 29 29 H 1.00910 * 110.99485 * 296.04674 * 13 11 10 30 30 H 1.00897 * 111.00222 * 59.99157 * 13 11 10 31 31 H 0.97006 * 119.99721 * 0.02562 * 16 14 11 32 32 H 1.08993 * 109.05292 * 35.00601 * 17 16 14 33 33 H 1.09004 * 109.62047 * 281.41098 * 18 17 16 34 34 H 1.09002 * 109.61426 * 41.95095 * 18 17 16 35 35 H 1.09001 * 108.97096 * 197.98808 * 20 19 18 36 36 H 1.09000 * 108.91325 * 79.24029 * 20 19 18 37 37 H 1.09001 * 108.84125 * 198.14391 * 21 20 19 38 38 H 1.08991 * 108.76015 * 79.72049 * 21 20 19 39 39 H 1.08999 * 109.05552 * 159.62435 * 23 22 21 40 40 H 1.09000 * 109.00466 * 40.67028 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 1.4647 -2.1293 0.0054 9 6 3.5117 -1.1939 0.0011 10 6 4.0217 -2.6364 0.0086 11 6 5.5517 -2.6362 0.0085 12 1 5.9150 -2.0511 -0.8364 13 7 6.0414 -2.0445 1.2607 14 6 6.0541 -4.0522 -0.1081 15 8 6.4282 -4.6464 0.8809 16 7 6.0876 -4.6586 -1.3113 17 6 6.5755 -6.0352 -1.4245 18 6 8.1137 -6.0176 -1.5249 19 8 8.5959 -7.2957 -1.2112 20 6 8.8101 -8.2065 -2.3138 21 6 7.6761 -8.1302 -3.3538 22 8 6.4094 -8.0269 -2.7643 23 6 5.9668 -6.6641 -2.6023 24 1 -0.4850 0.8400 -0.0004 25 1 3.8752 -0.6845 -0.8913 26 1 3.8746 -0.6756 0.8886 27 1 3.6580 -3.1457 0.9010 28 1 3.6588 -3.1546 -0.8790 29 1 5.7719 -1.0747 1.3320 30 1 5.7179 -2.5693 2.0594 31 1 5.7886 -4.1833 -2.1024 32 1 6.2832 -6.5907 -0.5334 33 1 8.4112 -5.7517 -2.5393 34 1 8.5181 -5.2914 -0.8198 35 1 8.8683 -9.2238 -1.9268 36 1 9.7537 -7.9577 -2.7993 37 1 7.7046 -9.0274 -3.9722 38 1 7.8409 -7.2599 -3.9889 39 1 4.8826 -6.6528 -2.4914 40 1 6.2394 -6.0944 -3.4907 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691560079.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:45 Heat of formation + Delta-G solvation = -155.667235 kcal Electronic energy + Delta-G solvation = -21480.000125 eV Core-core repulsion = 18100.664245 eV Total energy + Delta-G solvation = -3379.335880 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.57910 -40.37429 -37.74307 -37.26154 -36.33660 -34.80491 -32.25096 -32.06774 -29.94994 -28.22331 -27.74232 -25.49533 -23.15231 -22.71122 -22.01918 -21.27629 -19.21508 -18.61333 -18.26552 -18.12179 -17.07044 -16.78700 -16.42505 -16.14294 -15.93296 -15.63346 -15.52994 -15.29371 -14.98727 -14.77088 -14.59061 -14.38048 -14.14791 -13.50861 -13.27567 -13.07012 -12.69929 -12.44769 -12.12232 -12.04893 -11.84988 -11.67424 -11.65935 -11.39793 -11.16640 -10.89988 -10.76507 -10.60313 -10.05618 -9.65575 -8.29117 -6.34850 1.38916 1.41798 1.52562 1.56837 1.81127 2.37182 2.79711 2.95492 3.06686 3.53579 3.60354 3.73750 3.79566 3.95733 4.06679 4.09212 4.11798 4.19815 4.21949 4.45315 4.58264 4.59526 4.63115 4.71625 4.76314 4.82648 4.95966 4.96563 5.29929 5.38142 5.48106 5.63716 6.05048 6.09087 6.25928 6.31155 6.47359 6.50465 6.74182 7.20600 7.30188 8.87756 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.033312 B = 0.003579 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.325982 B = 7821.732287 C = 8295.555181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.001 3.999 3 Si 0.955 3.045 4 H -0.263 1.263 5 H -0.292 1.292 6 H -0.237 1.237 7 C -0.535 4.535 8 H 0.025 0.975 9 C -0.006 4.006 10 C -0.119 4.119 11 C 0.083 3.917 12 H 0.127 0.873 13 N -0.832 5.832 14 C 0.526 3.474 15 O -0.568 6.568 16 N -0.708 5.708 17 C 0.090 3.910 18 C 0.065 3.935 19 O -0.406 6.406 20 C 0.022 3.978 21 C 0.017 3.983 22 O -0.378 6.378 23 C 0.051 3.949 24 H 0.266 0.734 25 H 0.034 0.966 26 H 0.024 0.976 27 H 0.038 0.962 28 H 0.068 0.932 29 H 0.355 0.645 30 H 0.344 0.656 31 H 0.419 0.581 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.119 0.881 38 H 0.075 0.925 39 H 0.101 0.899 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.250 -11.272 -11.009 24.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.196 4.196 3 Si 0.778 3.222 4 H -0.188 1.188 5 H -0.218 1.218 6 H -0.160 1.160 7 C -0.573 4.573 8 H 0.044 0.956 9 C -0.044 4.044 10 C -0.159 4.159 11 C -0.032 4.032 12 H 0.144 0.856 13 N -0.363 5.363 14 C 0.313 3.687 15 O -0.445 6.445 16 N -0.365 5.365 17 C -0.016 4.016 18 C -0.014 4.014 19 O -0.324 6.324 20 C -0.054 4.054 21 C -0.060 4.060 22 O -0.295 6.295 23 C -0.025 4.025 24 H 0.074 0.926 25 H 0.052 0.948 26 H 0.043 0.957 27 H 0.057 0.943 28 H 0.086 0.914 29 H 0.171 0.829 30 H 0.157 0.843 31 H 0.257 0.743 32 H 0.081 0.919 33 H 0.100 0.900 34 H 0.090 0.910 35 H 0.115 0.885 36 H 0.103 0.897 37 H 0.137 0.863 38 H 0.093 0.907 39 H 0.119 0.881 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 20.058 -12.017 -10.362 25.575 hybrid contribution -1.572 1.162 -0.018 1.955 sum 18.486 -10.855 -10.380 23.818 Atomic orbital electron populations 1.70085 1.08611 1.28238 1.52556 1.26101 0.95615 1.03863 0.93987 0.85589 0.79656 0.77589 0.79372 1.18816 1.21791 1.16046 1.21461 0.92316 0.92866 1.50656 0.95620 1.19510 0.93684 0.93833 0.97355 1.22033 0.93468 0.98764 1.01663 1.21454 0.93245 0.91932 0.96575 0.85571 1.58761 1.66507 1.07668 1.03401 1.20886 0.76286 0.88702 0.82851 1.90672 1.48742 1.66920 1.38211 1.45689 1.66387 1.14290 1.10104 1.21181 0.95881 0.83354 1.01184 1.22658 0.91761 0.85074 1.01861 1.87516 1.85347 1.24261 1.35310 1.24099 0.98514 0.94163 0.88617 1.23244 0.82847 1.05131 0.94811 1.87804 1.33623 1.25403 1.82620 1.21956 1.00655 0.83164 0.96757 0.92552 0.94804 0.95732 0.94276 0.91354 0.82934 0.84308 0.74327 0.91851 0.90005 0.90996 0.88451 0.89698 0.86291 0.90683 0.88058 0.88882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.01 13.96 21.45 0.30 -58.71 16 2 C 0.00 0.05 5.47 84.65 0.46 0.51 16 3 Si 0.96 41.87 27.47 68.60 1.88 43.75 16 4 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 5 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 6 H -0.24 -9.28 6.53 99.48 0.65 -8.63 16 7 C -0.54 -29.58 9.66 25.60 0.25 -29.34 16 8 H 0.03 1.59 7.99 -2.91 -0.02 1.57 16 9 C -0.01 -0.27 3.81 29.85 0.11 -0.15 16 10 C -0.12 -4.21 4.78 30.59 0.15 -4.06 16 11 C 0.08 2.37 3.21 44.17 0.14 2.51 16 12 H 0.13 2.92 8.14 -2.38 -0.02 2.90 16 13 N -0.83 -24.78 8.94 -171.80 -1.54 -26.31 16 14 C 0.53 15.62 6.92 87.66 0.61 16.23 16 15 O -0.57 -21.67 15.90 -3.05 -0.05 -21.72 16 16 N -0.71 -15.25 5.03 -449.97 -2.26 -17.51 16 17 C 0.09 1.99 2.40 43.44 0.10 2.10 16 18 C 0.07 1.36 5.98 72.37 0.43 1.79 16 19 O -0.41 -9.59 10.29 -129.67 -1.33 -10.93 16 20 C 0.02 0.31 7.14 72.34 0.52 0.83 16 21 C 0.02 0.20 6.11 72.34 0.44 0.64 16 22 O -0.38 -7.18 10.50 -129.17 -1.36 -8.54 16 23 C 0.05 0.86 5.58 70.04 0.39 1.25 16 24 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 25 H 0.03 1.30 7.58 -2.39 -0.02 1.29 16 26 H 0.02 1.00 5.91 -2.39 -0.01 0.98 16 27 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.36 9.94 7.55 -89.69 -0.68 9.26 16 30 H 0.34 11.00 8.58 -89.70 -0.77 10.23 16 31 H 0.42 6.20 8.57 -92.70 -0.79 5.41 16 32 H 0.06 1.96 7.55 -2.39 -0.02 1.94 16 33 H 0.08 1.14 7.06 -2.39 -0.02 1.13 16 34 H 0.07 1.83 8.01 -2.39 -0.02 1.81 16 35 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.07 0.58 6.74 -2.39 -0.02 0.57 16 39 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.09 0.93 7.48 -2.39 -0.02 0.91 16 Total: -1.00 -75.72 322.22 -1.98 -77.70 By element: Atomic # 1 Polarization: 31.18 SS G_CDS: -1.23 Total: 29.95 kcal Atomic # 6 Polarization: -11.29 SS G_CDS: 3.61 Total: -7.68 kcal Atomic # 7 Polarization: -99.03 SS G_CDS: -3.50 Total: -102.53 kcal Atomic # 8 Polarization: -38.45 SS G_CDS: -2.74 Total: -41.19 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 1.88 Total: 43.75 kcal Total: -75.72 -1.98 -77.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691560079.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.969 kcal (2) G-P(sol) polarization free energy of solvation -75.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds