Wall clock time and date at job start Mon Mar 30 2020 04:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99703 * 2 1 4 4 H 1.48493 * 109.47170 * 270.00152 * 3 2 1 5 5 H 1.48500 * 109.46759 * 29.99892 * 3 2 1 6 6 H 1.48502 * 109.47117 * 149.99712 * 3 2 1 7 7 C 1.37872 * 120.00307 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99988 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00150 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47249 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47056 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.46970 * 54.99920 * 11 10 9 13 13 N 1.46900 * 109.46799 * 294.99699 * 11 10 9 14 14 C 1.50699 * 109.46596 * 175.00085 * 11 10 9 15 15 O 1.21282 * 120.00071 * 100.00117 * 14 11 10 16 16 N 1.34774 * 119.99682 * 279.99162 * 14 11 10 17 17 C 1.45122 * 118.76461 * 0.02925 * 16 14 11 18 18 C 1.54805 * 109.54032 * 269.26837 * 17 16 14 19 19 O 1.38014 * 109.47696 * 292.10946 * 18 17 16 20 20 C 1.42157 * 119.43703 * 63.42628 * 19 18 17 21 21 C 1.51534 * 108.75860 * 272.77582 * 20 19 18 22 22 H 1.08998 * 109.43820 * 331.37904 * 21 20 19 23 23 O 1.42905 * 109.45442 * 211.43698 * 21 20 19 24 24 C 1.47509 * 118.75637 * 180.02562 * 16 14 11 25 25 H 0.96998 * 120.00322 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.47261 * 59.99935 * 9 7 2 27 27 H 1.09003 * 109.47013 * 300.00026 * 9 7 2 28 28 H 1.08996 * 109.47069 * 59.99784 * 10 9 7 29 29 H 1.09003 * 109.47107 * 299.99935 * 10 9 7 30 30 H 1.00899 * 111.00049 * 300.00391 * 13 11 10 31 31 H 1.00902 * 111.00359 * 63.95569 * 13 11 10 32 32 H 1.09008 * 109.45661 * 29.28262 * 17 16 14 33 33 H 1.08996 * 109.46343 * 149.25472 * 17 16 14 34 34 H 1.08996 * 109.47165 * 52.11113 * 18 17 16 35 35 H 1.08996 * 109.46920 * 172.10660 * 18 17 16 36 36 H 1.08998 * 109.59175 * 152.99490 * 20 19 18 37 37 H 1.09003 * 109.59138 * 32.55777 * 20 19 18 38 38 H 0.96705 * 113.99788 * 59.88692 * 23 21 20 39 39 H 1.09004 * 109.16961 * 17.99927 * 24 16 14 40 40 H 1.09006 * 109.16694 * 258.79745 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0018 11 6 1.4806 -4.9871 0.0012 12 1 0.7894 -5.0072 -0.8414 13 7 0.7275 -5.1183 1.2556 14 6 2.4555 -6.1297 -0.1214 15 8 2.7863 -6.7531 0.8650 16 7 2.9596 -6.4589 -1.3271 17 6 2.5457 -5.6948 -2.4894 18 6 1.2994 -6.3558 -3.1267 19 8 1.6519 -7.5748 -3.6696 20 6 2.1236 -8.6094 -2.8164 21 6 3.6213 -8.4551 -2.6453 22 1 4.0411 -7.9824 -3.5332 23 8 4.2150 -9.7425 -2.4659 24 6 3.9113 -7.5824 -1.4157 25 1 -0.4850 0.8400 -0.0004 26 1 0.6249 -2.5571 -0.8896 27 1 0.6242 -2.5567 0.8903 28 1 2.8715 -3.6038 0.8922 29 1 2.8729 -3.6046 -0.8877 30 1 1.3465 -5.1024 2.0523 31 1 0.0226 -4.4003 1.3311 32 1 2.3017 -4.6765 -2.1864 33 1 3.3569 -5.6725 -3.2171 34 1 0.5367 -6.5054 -2.3626 35 1 0.9061 -5.7090 -3.9109 36 1 1.9048 -9.5794 -3.2628 37 1 1.6350 -8.5332 -1.8449 38 1 4.0717 -10.3483 -3.2059 39 1 3.8292 -8.1928 -0.5163 40 1 4.9249 -7.1880 -1.4880 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691560582.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:19 Heat of formation + Delta-G solvation = -154.821180 kcal Electronic energy + Delta-G solvation = -22196.464289 eV Core-core repulsion = 18817.165096 eV Total energy + Delta-G solvation = -3379.299192 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.88729 -39.94267 -37.92662 -37.17152 -36.39107 -34.86646 -32.53714 -31.72416 -29.49874 -28.57909 -27.46488 -25.68506 -23.95354 -22.58635 -21.82307 -20.22845 -19.15733 -18.69487 -18.23172 -17.76552 -17.41647 -16.98905 -16.53834 -16.36630 -15.96761 -15.61226 -15.34041 -14.93929 -14.82752 -14.70233 -14.40021 -14.03838 -13.65881 -13.44568 -13.18040 -12.91788 -12.82001 -12.68587 -12.60707 -12.53249 -11.88334 -11.73877 -11.61770 -11.35847 -11.30163 -10.80932 -10.55977 -10.52346 -9.84632 -9.68139 -8.20981 -6.31067 1.39946 1.41112 1.43169 1.51579 1.66509 2.40384 2.61401 3.13080 3.31027 3.41061 3.63050 3.68864 3.72144 3.97977 4.01665 4.07655 4.09181 4.18127 4.28205 4.39629 4.57710 4.61720 4.69488 4.74368 4.80286 4.88605 4.92209 5.06457 5.36523 5.47053 5.63988 5.80501 5.95438 6.19088 6.21816 6.41976 6.43136 6.80321 6.83884 7.00551 7.38247 8.89633 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.027755 B = 0.004271 C = 0.004133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.597384 B = 6554.943865 C = 6772.633436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.956 3.044 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.544 4.544 8 H 0.054 0.946 9 C 0.032 3.968 10 C -0.124 4.124 11 C 0.082 3.918 12 H 0.110 0.890 13 N -0.831 5.831 14 C 0.522 3.478 15 O -0.567 6.567 16 N -0.603 5.603 17 C 0.051 3.949 18 C 0.055 3.945 19 O -0.385 6.385 20 C 0.042 3.958 21 C 0.080 3.920 22 H 0.087 0.913 23 O -0.571 6.571 24 C 0.112 3.888 25 H 0.264 0.736 26 H 0.007 0.993 27 H 0.002 0.998 28 H 0.043 0.957 29 H 0.070 0.930 30 H 0.344 0.656 31 H 0.355 0.645 32 H 0.099 0.901 33 H 0.109 0.891 34 H 0.038 0.962 35 H 0.135 0.865 36 H 0.120 0.880 37 H 0.038 0.962 38 H 0.405 0.595 39 H 0.075 0.925 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.811 -15.424 -9.983 18.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.190 4.190 3 Si 0.782 3.218 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.582 4.582 8 H 0.072 0.928 9 C -0.005 4.005 10 C -0.163 4.163 11 C -0.033 4.033 12 H 0.128 0.872 13 N -0.363 5.363 14 C 0.311 3.689 15 O -0.445 6.445 16 N -0.337 5.337 17 C -0.072 4.072 18 C -0.024 4.024 19 O -0.303 6.303 20 C -0.034 4.034 21 C 0.020 3.980 22 H 0.104 0.896 23 O -0.380 6.380 24 C -0.011 4.011 25 H 0.073 0.927 26 H 0.026 0.974 27 H 0.020 0.980 28 H 0.062 0.938 29 H 0.089 0.911 30 H 0.157 0.843 31 H 0.170 0.830 32 H 0.117 0.883 33 H 0.127 0.873 34 H 0.056 0.944 35 H 0.153 0.847 36 H 0.138 0.862 37 H 0.056 0.944 38 H 0.256 0.744 39 H 0.094 0.906 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.797 -16.150 -9.388 19.286 hybrid contribution 0.450 1.865 0.364 1.953 sum 5.247 -14.285 -9.023 17.692 Atomic orbital electron populations 1.70049 1.07413 1.27753 1.51277 1.25808 0.95673 1.02788 0.94732 0.85578 0.78595 0.79141 0.78527 1.19587 1.20947 1.19425 1.21585 0.93300 0.92391 1.50942 0.92796 1.18954 0.93894 0.91702 0.95959 1.22214 0.98971 0.93618 1.01517 1.21465 0.94620 0.91214 0.95991 0.87184 1.58767 1.18427 1.55760 1.03311 1.21000 0.80766 0.84404 0.82764 1.90619 1.61306 1.54513 1.38103 1.47714 1.45428 1.32929 1.07601 1.22987 0.99834 0.96567 0.87775 1.22794 0.94493 0.85322 0.99749 1.86277 1.84150 1.22107 1.37746 1.23102 0.93644 0.91952 0.94744 1.22376 0.93307 0.85044 0.97250 0.89560 1.86457 1.78010 1.24088 1.49453 1.21530 0.92342 0.87727 0.99473 0.92725 0.97441 0.97997 0.93845 0.91115 0.84324 0.83014 0.88327 0.87295 0.94394 0.84739 0.86231 0.94393 0.74358 0.90607 0.90309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.03 13.29 21.45 0.28 -52.74 16 2 C 0.01 0.48 5.46 84.65 0.46 0.94 16 3 Si 0.96 42.54 29.54 68.60 2.03 44.57 16 4 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 7 C -0.54 -29.10 9.11 25.60 0.23 -28.87 16 8 H 0.05 2.83 7.74 -2.91 -0.02 2.80 16 9 C 0.03 1.52 4.74 29.85 0.14 1.66 16 10 C -0.12 -4.70 4.42 30.60 0.14 -4.57 16 11 C 0.08 2.74 2.36 44.17 0.10 2.85 16 12 H 0.11 3.38 6.16 -2.39 -0.01 3.37 16 13 N -0.83 -28.73 8.94 -171.79 -1.54 -30.27 16 14 C 0.52 17.49 6.89 87.66 0.60 18.09 16 15 O -0.57 -22.79 15.55 -3.03 -0.05 -22.84 16 16 N -0.60 -15.89 2.19 -818.00 -1.79 -17.68 16 17 C 0.05 1.09 5.12 87.25 0.45 1.54 16 18 C 0.05 1.07 6.56 72.60 0.48 1.54 16 19 O -0.38 -7.55 9.86 -117.85 -1.16 -8.71 16 20 C 0.04 0.78 6.07 71.50 0.43 1.21 16 21 C 0.08 1.44 3.34 30.30 0.10 1.54 16 22 H 0.09 1.33 8.01 -2.39 -0.02 1.31 16 23 O -0.57 -9.40 13.28 -148.98 -1.98 -11.38 16 24 C 0.11 2.72 5.81 86.37 0.50 3.22 16 25 H 0.26 14.33 8.31 -92.71 -0.77 13.55 16 26 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 27 H 0.00 0.09 6.87 -2.39 -0.02 0.07 16 28 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.07 2.51 6.40 -2.39 -0.02 2.49 16 30 H 0.34 12.22 8.58 -89.69 -0.77 11.45 16 31 H 0.35 12.24 7.55 -89.69 -0.68 11.56 16 32 H 0.10 2.33 4.58 -2.38 -0.01 2.32 16 33 H 0.11 1.89 8.11 -2.39 -0.02 1.87 16 34 H 0.04 0.84 7.39 -2.39 -0.02 0.83 16 35 H 0.14 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.12 1.56 7.93 -2.39 -0.02 1.54 16 37 H 0.04 0.89 7.40 -2.39 -0.02 0.88 16 38 H 0.40 2.57 8.96 -74.05 -0.66 1.91 16 39 H 0.08 2.27 6.99 -2.38 -0.02 2.25 16 40 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 Total: -1.00 -67.82 317.38 -1.59 -69.41 By element: Atomic # 1 Polarization: 31.51 SS G_CDS: -1.03 Total: 30.48 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: 3.64 Total: -0.84 kcal Atomic # 7 Polarization: -97.65 SS G_CDS: -3.04 Total: -100.69 kcal Atomic # 8 Polarization: -39.74 SS G_CDS: -3.19 Total: -42.93 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -67.82 -1.59 -69.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691560582.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.411 kcal (2) G-P(sol) polarization free energy of solvation -67.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds