Wall clock time and date at job start Mon Mar 30 2020 04:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.81393 * 103.00246 * 2 1 4 4 H 1.09004 * 110.88666 * 51.12209 * 3 2 1 5 5 C 1.55156 * 111.00728 * 287.19933 * 3 2 1 6 6 C 1.54315 * 102.86443 * 206.22850 * 5 3 2 7 7 N 1.47021 * 107.27462 * 22.52434 * 6 5 3 8 8 C 1.34777 * 125.64749 * 180.97133 * 7 6 5 9 9 O 1.21282 * 120.00142 * 179.68691 * 8 7 6 10 10 C 1.50700 * 119.99986 * 359.68805 * 8 7 6 11 11 H 1.09001 * 109.47087 * 40.00373 * 10 8 7 12 12 N 1.46905 * 109.47121 * 160.00176 * 10 8 7 13 13 C 1.52998 * 109.47064 * 280.00094 * 10 8 7 14 14 C 1.53004 * 109.47139 * 174.99796 * 13 10 8 15 15 C 1.50698 * 109.47137 * 179.97438 * 14 13 10 16 16 H 1.08002 * 120.00164 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00019 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00441 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 120.00117 * 0.02562 * 17 15 14 20 20 H 1.48496 * 109.47123 * 89.99663 * 19 17 15 21 21 H 1.48500 * 109.47443 * 210.00440 * 19 17 15 22 22 H 1.48503 * 109.47091 * 330.00281 * 19 17 15 23 23 C 1.47428 * 108.70514 * 0.70247 * 7 6 5 24 24 H 1.09000 * 109.47171 * 299.99661 * 1 2 3 25 25 H 1.09006 * 109.47034 * 59.99886 * 1 2 3 26 26 H 1.09007 * 109.47423 * 179.97438 * 1 2 3 27 27 H 1.09006 * 110.71792 * 324.78540 * 5 3 2 28 28 H 1.08997 * 110.72641 * 87.87740 * 5 3 2 29 29 H 1.08997 * 109.98382 * 263.04584 * 6 5 3 30 30 H 1.08999 * 109.77266 * 141.88139 * 6 5 3 31 31 H 1.00901 * 110.99869 * 60.00289 * 12 10 8 32 32 H 1.00896 * 110.99543 * 183.95412 * 12 10 8 33 33 H 1.08995 * 109.47368 * 294.99520 * 13 10 8 34 34 H 1.09001 * 109.47446 * 54.99927 * 13 10 8 35 35 H 1.08994 * 109.47287 * 300.00153 * 14 13 10 36 36 H 1.09004 * 109.46568 * 60.00209 * 14 13 10 37 37 H 0.96998 * 120.00024 * 180.02562 * 18 17 15 38 38 H 1.09001 * 110.36407 * 94.94098 * 23 7 6 39 39 H 1.08993 * 110.36558 * 217.26277 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 1 1.6867 2.2899 0.7928 5 6 1.9299 2.4057 -1.3837 6 6 2.9069 3.5995 -1.4245 7 7 3.9959 3.3049 -0.4817 8 6 5.0419 4.1112 -0.2131 9 8 5.8823 3.7668 0.5907 10 6 5.1674 5.4406 -0.9116 11 1 4.1843 5.9054 -0.9874 12 7 6.0642 6.3146 -0.1435 13 6 5.7405 5.2278 -2.3141 14 6 5.7517 6.5592 -3.0680 15 6 6.3168 6.3497 -4.4492 16 1 6.6357 5.3653 -4.7586 17 6 6.4267 7.4147 -5.3179 18 7 6.9194 7.2318 -6.5235 19 14 5.8757 9.1174 -4.7826 20 1 7.0161 9.8321 -4.1549 21 1 5.4045 9.8802 -5.9664 22 1 4.7685 8.9935 -3.8008 23 6 3.7507 1.9843 0.1261 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 2.1435 1.7002 -2.1867 28 1 0.8972 2.7499 -1.4394 29 1 2.3927 4.5122 -1.1235 30 1 3.3088 3.7128 -2.4314 31 1 6.9828 5.9056 -0.0591 32 1 6.1143 7.2338 -0.5565 33 1 6.7584 4.8458 -2.2366 34 1 5.1231 4.5098 -2.8539 35 1 4.7338 6.9413 -3.1456 36 1 6.3692 7.2771 -2.5282 37 1 6.9970 7.9811 -7.1345 38 1 4.2900 1.2098 -0.4192 39 1 4.0481 1.9883 1.1747 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691564001.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:44 Heat of formation + Delta-G solvation = -42.729314 kcal Electronic energy + Delta-G solvation = -19052.628233 eV Core-core repulsion = 16120.942579 eV Total energy + Delta-G solvation = -2931.685653 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.12803 -37.60314 -35.62630 -32.83048 -31.90238 -30.34338 -29.50765 -29.15239 -26.89438 -24.55143 -22.69368 -21.65160 -20.33572 -19.14469 -17.60307 -17.16014 -16.74038 -15.99729 -15.39354 -14.85364 -14.46107 -14.28589 -14.09893 -14.08658 -13.86911 -13.62331 -13.37167 -12.92262 -12.72834 -12.63247 -12.51621 -12.16083 -11.92164 -11.53131 -11.36665 -11.27966 -10.98595 -10.36364 -10.24182 -10.11857 -9.88772 -9.45454 -9.33415 -8.70089 -8.63649 -8.34525 -8.03546 -6.13290 -4.13023 1.22060 2.15983 2.80812 3.00708 3.23526 3.31787 3.32655 3.97417 4.27053 4.35890 4.61825 4.75022 4.77683 4.80052 4.94120 4.96506 5.04507 5.19490 5.31805 5.36323 5.41052 5.55598 5.57736 5.58092 5.65515 5.79437 6.12496 6.16715 6.32917 6.63328 7.06600 7.19140 7.29231 7.53814 7.64817 7.75567 8.30299 8.42971 8.90728 9.47816 10.99906 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.025478 B = 0.003945 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.718873 B = 7096.479669 C = 7683.361822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.237 6.237 3 C -0.077 4.077 4 H 0.101 0.899 5 C -0.124 4.124 6 C 0.098 3.902 7 N -0.620 5.620 8 C 0.544 3.456 9 O -0.533 6.533 10 C 0.077 3.923 11 H 0.096 0.904 12 N -0.831 5.831 13 C -0.130 4.130 14 C -0.009 4.009 15 C -0.524 4.524 16 H 0.071 0.929 17 C 0.068 3.932 18 N -0.900 5.900 19 Si 0.880 3.120 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.265 1.265 23 C 0.133 3.867 24 H 0.076 0.924 25 H 0.079 0.921 26 H 0.102 0.898 27 H 0.092 0.908 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.349 0.651 32 H 0.351 0.649 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.018 0.982 36 H 0.011 0.989 37 H 0.264 0.736 38 H 0.076 0.924 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.534 -10.252 12.376 21.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 S -0.009 6.009 3 C -0.206 4.206 4 H 0.119 0.881 5 C -0.163 4.163 6 C -0.027 4.027 7 N -0.357 5.357 8 C 0.333 3.667 9 O -0.409 6.409 10 C -0.038 4.038 11 H 0.114 0.886 12 N -0.363 5.363 13 C -0.169 4.169 14 C -0.047 4.047 15 C -0.562 4.562 16 H 0.089 0.911 17 C -0.134 4.134 18 N -0.539 5.539 19 Si 0.708 3.292 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.190 1.190 23 C 0.009 3.991 24 H 0.095 0.905 25 H 0.098 0.902 26 H 0.120 0.880 27 H 0.111 0.889 28 H 0.103 0.897 29 H 0.091 0.909 30 H 0.102 0.898 31 H 0.162 0.838 32 H 0.166 0.834 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.036 0.964 36 H 0.030 0.970 37 H 0.074 0.926 38 H 0.094 0.906 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -13.797 -11.285 13.288 22.232 hybrid contribution -0.657 1.977 -0.873 2.259 sum -14.454 -9.307 12.416 21.206 Atomic orbital electron populations 1.23401 0.94061 1.06585 1.05114 1.86908 1.07359 1.08832 1.97835 1.24392 1.00239 0.94729 1.01259 0.88096 1.23043 0.99901 0.97456 0.95942 1.22142 0.87895 0.97991 0.94626 1.48432 1.24721 1.18810 1.43751 1.20531 0.79326 0.85454 0.81411 1.90657 1.40259 1.74942 1.35001 1.21477 0.99256 0.90431 0.92678 0.88594 1.58738 1.16483 1.06007 1.55102 1.22206 1.00842 1.01304 0.92581 1.19567 0.96793 0.92132 0.96187 1.21062 1.41943 0.97063 0.96129 0.91053 1.25041 0.94557 0.99069 0.94747 1.69911 1.45508 1.31825 1.06636 0.86774 0.79604 0.84488 0.78376 1.20199 1.21309 1.18989 1.21811 0.91455 0.85641 1.00161 0.90452 0.90225 0.87974 0.88892 0.89715 0.90898 0.89767 0.83783 0.83421 0.92015 0.91831 0.96375 0.97042 0.92613 0.90579 0.89584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.71 10.76 101.05 1.09 0.38 16 2 S -0.24 -2.12 21.81 -107.50 -2.34 -4.47 16 3 C -0.08 -0.69 3.54 -24.58 -0.09 -0.77 16 4 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 5 C -0.12 -1.02 6.44 -24.90 -0.16 -1.18 16 6 C 0.10 1.04 6.19 -3.07 -0.02 1.02 16 7 N -0.62 -8.35 3.33 -170.53 -0.57 -8.92 16 8 C 0.54 9.08 7.10 -10.99 -0.08 9.01 16 9 O -0.53 -10.55 16.51 5.56 0.09 -10.45 16 10 C 0.08 1.25 2.62 -68.86 -0.18 1.07 16 11 H 0.10 1.44 7.46 -51.93 -0.39 1.05 16 12 N -0.83 -13.56 8.94 -5.65 -0.05 -13.61 16 13 C -0.13 -2.44 4.77 -26.73 -0.13 -2.57 16 14 C -0.01 -0.21 3.81 -27.88 -0.11 -0.31 16 15 C -0.52 -14.42 9.66 -34.44 -0.33 -14.75 16 16 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 17 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 18 N -0.90 -27.21 13.96 55.43 0.77 -26.44 16 19 Si 0.88 20.89 27.47 -169.99 -4.67 16.22 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 22 H -0.27 -5.94 6.54 56.52 0.37 -5.57 16 23 C 0.13 1.58 6.39 -2.53 -0.02 1.56 16 24 H 0.08 0.39 8.14 -51.92 -0.42 -0.03 16 25 H 0.08 0.40 8.14 -51.92 -0.42 -0.02 16 26 H 0.10 0.49 8.14 -51.92 -0.42 0.07 16 27 H 0.09 0.79 8.03 -51.93 -0.42 0.38 16 28 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.70 7.85 -51.93 -0.41 0.29 16 30 H 0.08 0.97 6.77 -51.93 -0.35 0.62 16 31 H 0.35 5.81 8.58 -39.29 -0.34 5.47 16 32 H 0.35 5.46 7.55 -39.29 -0.30 5.17 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.06 1.17 6.68 -51.93 -0.35 0.82 16 35 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 36 H 0.01 0.25 6.29 -51.93 -0.33 -0.08 16 37 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.08 0.94 8.03 -51.93 -0.42 0.53 16 39 H 0.09 1.09 8.04 -51.93 -0.42 0.67 16 LS Contribution 327.14 15.07 4.93 4.93 Total: -1.00 -32.20 327.14 -8.16 -40.36 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -6.20 Total: 7.11 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: -0.12 Total: -4.73 kcal Atomic # 7 Polarization: -49.13 SS G_CDS: 0.16 Total: -48.97 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.09 Total: -10.45 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.67 Total: 16.22 kcal Atomic # 16 Polarization: -2.12 SS G_CDS: -2.34 Total: -4.47 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.20 -8.16 -40.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691564001.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.369 kcal (2) G-P(sol) polarization free energy of solvation -32.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds