Wall clock time and date at job start Mon Mar 30 2020 04:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.81393 * 103.00246 * 2 1 4 4 H 1.09004 * 110.88666 * 51.12209 * 3 2 1 5 5 C 1.55156 * 111.00728 * 287.19933 * 3 2 1 6 6 C 1.54315 * 102.86443 * 206.22850 * 5 3 2 7 7 N 1.47021 * 107.27462 * 22.52434 * 6 5 3 8 8 C 1.34777 * 125.64749 * 180.97133 * 7 6 5 9 9 O 1.21282 * 120.00142 * 179.68691 * 8 7 6 10 10 C 1.50700 * 119.99986 * 359.68805 * 8 7 6 11 11 H 1.09001 * 109.47087 * 40.00373 * 10 8 7 12 12 N 1.46905 * 109.47121 * 160.00176 * 10 8 7 13 13 C 1.52998 * 109.47064 * 280.00094 * 10 8 7 14 14 C 1.53004 * 109.47139 * 174.99796 * 13 10 8 15 15 C 1.50698 * 109.47137 * 179.97438 * 14 13 10 16 16 H 1.08002 * 120.00164 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00019 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00441 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 120.00117 * 0.02562 * 17 15 14 20 20 H 1.48496 * 109.47123 * 89.99663 * 19 17 15 21 21 H 1.48500 * 109.47443 * 210.00440 * 19 17 15 22 22 H 1.48503 * 109.47091 * 330.00281 * 19 17 15 23 23 C 1.47428 * 108.70514 * 0.70247 * 7 6 5 24 24 H 1.09000 * 109.47171 * 299.99661 * 1 2 3 25 25 H 1.09006 * 109.47034 * 59.99886 * 1 2 3 26 26 H 1.09007 * 109.47423 * 179.97438 * 1 2 3 27 27 H 1.09006 * 110.71792 * 324.78540 * 5 3 2 28 28 H 1.08997 * 110.72641 * 87.87740 * 5 3 2 29 29 H 1.08997 * 109.98382 * 263.04584 * 6 5 3 30 30 H 1.08999 * 109.77266 * 141.88139 * 6 5 3 31 31 H 1.00901 * 110.99869 * 60.00289 * 12 10 8 32 32 H 1.00896 * 110.99543 * 183.95412 * 12 10 8 33 33 H 1.08995 * 109.47368 * 294.99520 * 13 10 8 34 34 H 1.09001 * 109.47446 * 54.99927 * 13 10 8 35 35 H 1.08994 * 109.47287 * 300.00153 * 14 13 10 36 36 H 1.09004 * 109.46568 * 60.00209 * 14 13 10 37 37 H 0.96998 * 120.00024 * 180.02562 * 18 17 15 38 38 H 1.09001 * 110.36407 * 94.94098 * 23 7 6 39 39 H 1.08993 * 110.36558 * 217.26277 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 1 1.6867 2.2899 0.7928 5 6 1.9299 2.4057 -1.3837 6 6 2.9069 3.5995 -1.4245 7 7 3.9959 3.3049 -0.4817 8 6 5.0419 4.1112 -0.2131 9 8 5.8823 3.7668 0.5907 10 6 5.1674 5.4406 -0.9116 11 1 4.1843 5.9054 -0.9874 12 7 6.0642 6.3146 -0.1435 13 6 5.7405 5.2278 -2.3141 14 6 5.7517 6.5592 -3.0680 15 6 6.3168 6.3497 -4.4492 16 1 6.6357 5.3653 -4.7586 17 6 6.4267 7.4147 -5.3179 18 7 6.9194 7.2318 -6.5235 19 14 5.8757 9.1174 -4.7826 20 1 7.0161 9.8321 -4.1549 21 1 5.4045 9.8802 -5.9664 22 1 4.7685 8.9935 -3.8008 23 6 3.7507 1.9843 0.1261 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 2.1435 1.7002 -2.1867 28 1 0.8972 2.7499 -1.4394 29 1 2.3927 4.5122 -1.1235 30 1 3.3088 3.7128 -2.4314 31 1 6.9828 5.9056 -0.0591 32 1 6.1143 7.2338 -0.5565 33 1 6.7584 4.8458 -2.2366 34 1 5.1231 4.5098 -2.8539 35 1 4.7338 6.9413 -3.1456 36 1 6.3692 7.2771 -2.5282 37 1 6.9970 7.9811 -7.1345 38 1 4.2900 1.2098 -0.4192 39 1 4.0481 1.9883 1.1747 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691564001.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:44 Heat of formation + Delta-G solvation = -65.642783 kcal Electronic energy + Delta-G solvation = -19053.621835 eV Core-core repulsion = 16120.942579 eV Total energy + Delta-G solvation = -2932.679256 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.30132 -38.68956 -37.14247 -34.82593 -32.89146 -32.10446 -30.34632 -29.66458 -28.40420 -26.02884 -23.98799 -22.49060 -21.98150 -20.31922 -19.10952 -18.51742 -18.01367 -16.93660 -16.57978 -16.21602 -16.03741 -15.71340 -15.31356 -14.85678 -14.77155 -14.71735 -14.44249 -14.23886 -14.05648 -13.68872 -13.55828 -13.37592 -13.06653 -12.89728 -12.65978 -12.30019 -12.13743 -12.04193 -11.86375 -11.64919 -11.41743 -10.87657 -10.85796 -10.76812 -9.82458 -9.67270 -8.71829 -8.29619 -6.35570 0.55479 1.39356 1.40344 1.49943 1.52080 1.58564 1.93797 2.36603 3.05923 3.14483 3.49034 3.64971 3.68768 3.89242 4.03283 4.12993 4.14853 4.22003 4.38929 4.40281 4.51025 4.52625 4.64482 4.71749 4.76463 4.85303 4.92982 4.94953 5.07154 5.20707 5.35000 5.45176 5.62058 6.00981 6.24865 6.36745 6.46457 6.72836 7.04609 7.29343 8.87218 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.025478 B = 0.003945 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.718873 B = 7096.479669 C = 7683.361822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 S -0.283 6.283 3 C -0.059 4.059 4 H 0.114 0.886 5 C -0.113 4.113 6 C 0.089 3.911 7 N -0.617 5.617 8 C 0.538 3.462 9 O -0.573 6.573 10 C 0.088 3.912 11 H 0.119 0.881 12 N -0.831 5.831 13 C -0.118 4.118 14 C -0.003 4.003 15 C -0.535 4.535 16 H 0.025 0.975 17 C 0.003 3.997 18 N -0.953 5.953 19 Si 0.954 3.046 20 H -0.269 1.269 21 H -0.287 1.287 22 H -0.235 1.235 23 C 0.128 3.872 24 H 0.088 0.912 25 H 0.091 0.909 26 H 0.111 0.889 27 H 0.089 0.911 28 H 0.115 0.885 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.345 0.655 32 H 0.356 0.644 33 H 0.039 0.961 34 H 0.063 0.937 35 H 0.034 0.966 36 H 0.023 0.977 37 H 0.266 0.734 38 H 0.065 0.935 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.449 -9.057 13.673 23.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 S -0.056 6.056 3 C -0.189 4.189 4 H 0.132 0.868 5 C -0.153 4.153 6 C -0.034 4.034 7 N -0.351 5.351 8 C 0.327 3.673 9 O -0.452 6.452 10 C -0.027 4.027 11 H 0.137 0.863 12 N -0.363 5.363 13 C -0.158 4.158 14 C -0.041 4.041 15 C -0.573 4.573 16 H 0.043 0.957 17 C -0.194 4.194 18 N -0.593 5.593 19 Si 0.777 3.223 20 H -0.194 1.194 21 H -0.214 1.214 22 H -0.158 1.158 23 C 0.004 3.996 24 H 0.107 0.893 25 H 0.110 0.890 26 H 0.130 0.870 27 H 0.107 0.893 28 H 0.134 0.866 29 H 0.111 0.889 30 H 0.093 0.907 31 H 0.158 0.842 32 H 0.172 0.828 33 H 0.058 0.942 34 H 0.082 0.918 35 H 0.053 0.947 36 H 0.042 0.958 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -16.756 -10.114 14.590 24.412 hybrid contribution 0.255 1.453 -1.327 1.985 sum -16.501 -8.661 13.263 22.873 Atomic orbital electron populations 1.23472 0.90471 1.07626 1.06278 1.87134 1.11304 1.09166 1.97963 1.24231 0.97715 0.94776 1.02154 0.86827 1.23042 1.00842 0.96203 0.95194 1.22402 0.87517 1.00062 0.93420 1.48471 1.24383 1.18749 1.43536 1.20578 0.79670 0.85864 0.81206 1.90635 1.41872 1.75770 1.36899 1.21379 1.00033 0.90711 0.90619 0.86292 1.58755 1.16361 1.06241 1.54901 1.22014 0.99935 0.99630 0.94198 1.19482 0.97172 0.94036 0.93387 1.21422 1.41777 0.95220 0.98906 0.95670 1.26084 0.94603 1.04169 0.94545 1.70083 1.47474 1.33433 1.08352 0.85606 0.80151 0.78042 0.78522 1.19412 1.21350 1.15753 1.21876 0.93939 0.84578 0.99166 0.89321 0.88974 0.87013 0.89275 0.86634 0.88898 0.90725 0.84174 0.82798 0.94219 0.91794 0.94742 0.95846 0.92502 0.91650 0.90724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 10.76 113.37 1.22 0.28 16 2 S -0.28 -4.65 21.81 -56.49 -1.23 -5.88 16 3 C -0.06 -0.95 3.54 31.99 0.11 -0.83 16 4 H 0.11 1.55 8.14 -2.39 -0.02 1.54 16 5 C -0.11 -1.55 6.44 31.78 0.20 -1.35 16 6 C 0.09 1.69 6.19 86.73 0.54 2.23 16 7 N -0.62 -15.97 3.33 -811.82 -2.70 -18.67 16 8 C 0.54 17.64 7.10 87.66 0.62 18.26 16 9 O -0.57 -22.86 16.51 -3.04 -0.05 -22.91 16 10 C 0.09 2.72 2.62 44.17 0.12 2.84 16 11 H 0.12 3.16 7.46 -2.39 -0.02 3.14 16 12 N -0.83 -25.76 8.94 -171.79 -1.54 -27.30 16 13 C -0.12 -4.38 4.77 30.59 0.15 -4.24 16 14 C 0.00 -0.14 3.81 29.85 0.11 -0.03 16 15 C -0.54 -29.87 9.66 25.60 0.25 -29.62 16 16 H 0.02 1.58 7.99 -2.91 -0.02 1.55 16 17 C 0.00 0.15 5.47 84.65 0.46 0.62 16 18 N -0.95 -58.98 13.96 21.45 0.30 -58.68 16 19 Si 0.95 41.98 27.47 68.60 1.88 43.87 16 20 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 21 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 22 H -0.23 -9.11 6.54 99.48 0.65 -8.46 16 23 C 0.13 2.98 6.39 86.85 0.55 3.54 16 24 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 25 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.09 1.33 8.03 -2.38 -0.02 1.31 16 28 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.09 1.44 7.85 -2.39 -0.02 1.42 16 30 H 0.07 1.59 6.77 -2.39 -0.02 1.58 16 31 H 0.35 11.31 8.58 -89.69 -0.77 10.54 16 32 H 0.36 10.20 7.55 -89.70 -0.68 9.52 16 33 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.06 2.34 6.68 -2.39 -0.02 2.33 16 35 H 0.03 1.38 7.20 -2.39 -0.02 1.36 16 36 H 0.02 0.95 6.29 -2.39 -0.02 0.94 16 37 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 38 H 0.07 1.66 8.03 -2.39 -0.02 1.64 16 39 H 0.07 1.90 8.04 -2.39 -0.02 1.88 16 Total: -1.00 -71.81 327.14 0.55 -71.26 By element: Atomic # 1 Polarization: 27.08 SS G_CDS: -0.45 Total: 26.62 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: 4.34 Total: -8.31 kcal Atomic # 7 Polarization: -100.71 SS G_CDS: -3.94 Total: -104.65 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: -0.05 Total: -22.91 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 1.88 Total: 43.87 kcal Atomic # 16 Polarization: -4.65 SS G_CDS: -1.23 Total: -5.88 kcal Total: -71.81 0.55 -71.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691564001.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.613 kcal (2) G-P(sol) polarization free energy of solvation -71.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds