Wall clock time and date at job start Mon Mar 30 2020 05:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 113.99982 * 2 1 4 4 C 1.53000 * 109.47046 * 179.97438 * 3 2 1 5 5 O 1.42897 * 113.41244 * 313.20223 * 4 3 2 6 6 C 1.53492 * 114.20329 * 179.97438 * 4 3 2 7 7 N 1.47073 * 87.98402 * 220.34190 * 6 4 3 8 8 C 1.34775 * 136.05784 * 207.07880 * 7 6 4 9 9 O 1.21283 * 120.00078 * 0.02562 * 8 7 6 10 10 C 1.50707 * 119.99898 * 180.02562 * 8 7 6 11 11 H 1.09002 * 109.46844 * 40.00384 * 10 8 7 12 12 N 1.46897 * 109.46776 * 160.00621 * 10 8 7 13 13 C 1.52999 * 109.46980 * 280.00771 * 10 8 7 14 14 C 1.53006 * 109.46626 * 175.00014 * 13 10 8 15 15 C 1.50699 * 109.46866 * 179.97438 * 14 13 10 16 16 H 1.08003 * 119.99963 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00270 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00302 * 179.97438 * 17 15 14 19 19 Si 1.86805 * 119.99832 * 0.02562 * 17 15 14 20 20 H 1.48506 * 109.47310 * 89.99428 * 19 17 15 21 21 H 1.48491 * 109.47296 * 209.99911 * 19 17 15 22 22 H 1.48502 * 109.46905 * 329.99956 * 19 17 15 23 23 C 1.47063 * 87.88336 * 27.34748 * 7 6 4 24 24 H 1.09000 * 109.47467 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47232 * 300.00304 * 1 2 3 26 26 H 1.09006 * 109.46738 * 60.00402 * 1 2 3 27 27 H 1.09000 * 109.46937 * 59.99611 * 3 2 1 28 28 H 1.09003 * 109.46808 * 299.99902 * 3 2 1 29 29 H 0.96696 * 114.00564 * 46.79543 * 5 4 3 30 30 H 1.09008 * 113.46690 * 105.56856 * 6 4 3 31 31 H 1.08999 * 113.52353 * 335.13086 * 6 4 3 32 32 H 1.00888 * 111.00369 * 60.00291 * 12 10 8 33 33 H 1.00900 * 110.99476 * 183.96192 * 12 10 8 34 34 H 1.08993 * 109.47839 * 55.00083 * 13 10 8 35 35 H 1.09000 * 109.47160 * 294.99645 * 13 10 8 36 36 H 1.09000 * 109.47050 * 299.99699 * 14 13 10 37 37 H 1.09001 * 109.46801 * 59.99811 * 14 13 10 38 38 H 0.97002 * 119.99998 * 179.97438 * 18 17 15 39 39 H 1.09005 * 113.47442 * 87.43301 * 23 7 6 40 40 H 1.09001 * 113.46708 * 217.88126 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 8 4.0302 0.2451 0.9569 6 6 4.2733 2.5306 0.0001 7 7 5.2312 1.9461 -0.9507 8 6 6.5244 2.1471 -1.2726 9 8 7.1664 3.0014 -0.6990 10 6 7.1727 1.3104 -2.3454 11 1 6.4701 1.1634 -3.1657 12 7 8.3715 1.9972 -2.8444 13 6 7.5683 -0.0481 -1.7632 14 6 8.1120 -0.9424 -2.8793 15 6 8.5022 -2.2802 -2.3058 16 1 8.3755 -2.4732 -1.2507 17 6 9.0210 -3.2579 -3.1279 18 7 9.3620 -4.4252 -2.6274 19 14 9.2408 -2.9239 -4.9527 20 1 10.5912 -2.3545 -5.1926 21 1 9.0974 -4.1937 -5.7091 22 1 8.2085 -1.9579 -5.4069 23 6 4.1549 1.0503 -1.4002 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.6885 1.8464 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.5632 -0.6016 0.9544 30 1 4.7170 2.7828 0.9633 31 1 3.6875 3.3477 -0.4210 32 1 9.0387 2.1452 -2.1022 33 1 8.7882 1.4875 -3.6090 34 1 6.6943 -0.5192 -1.3135 35 1 8.3368 0.0923 -1.0031 36 1 7.3434 -1.0827 -3.6394 37 1 8.9860 -0.4712 -3.3290 38 1 9.7267 -5.1132 -3.2059 39 1 3.5370 1.4765 -2.1907 40 1 4.4975 0.0414 -1.6300 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691570195.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:04 Heat of formation + Delta-G solvation = -90.828348 kcal Electronic energy + Delta-G solvation = -21562.800149 eV Core-core repulsion = 18186.275894 eV Total energy + Delta-G solvation = -3376.524255 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.83610 -38.76690 -37.61216 -35.56026 -35.19924 -32.77253 -30.60735 -30.28152 -28.05742 -26.65796 -26.22016 -25.42176 -23.23719 -20.87753 -20.25218 -19.00587 -17.46005 -17.30276 -16.93302 -16.70943 -16.32133 -15.72571 -15.42230 -14.76268 -14.51571 -14.23704 -14.07243 -13.91066 -13.64470 -13.44845 -12.95799 -12.78258 -12.64180 -12.41598 -11.99276 -11.88284 -11.79832 -11.32571 -11.02488 -10.92317 -10.35069 -10.26073 -10.10175 -9.99957 -9.84367 -9.35008 -9.28109 -8.71867 -8.59445 -8.29703 -6.08805 -4.08020 2.75365 2.85232 3.24162 3.26662 3.34601 3.36133 3.64380 4.05972 4.39895 4.46619 4.58159 4.81548 4.92905 4.98284 5.01791 5.07716 5.10428 5.23981 5.24161 5.31728 5.39309 5.48102 5.51365 5.62227 5.67896 5.80710 6.20954 6.39721 6.63211 6.69927 7.13241 7.24651 7.37868 7.51569 7.69133 7.77148 7.79659 8.37174 8.48411 8.95954 9.52451 11.04491 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.016793 B = 0.004780 C = 0.004039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.962946 B = 5855.965919 C = 6930.586386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.390 6.390 3 C 0.048 3.952 4 C 0.101 3.899 5 O -0.523 6.523 6 C 0.117 3.883 7 N -0.640 5.640 8 C 0.560 3.440 9 O -0.535 6.535 10 C 0.080 3.920 11 H 0.094 0.906 12 N -0.832 5.832 13 C -0.128 4.128 14 C -0.009 4.009 15 C -0.522 4.522 16 H 0.072 0.928 17 C 0.068 3.932 18 N -0.901 5.901 19 Si 0.880 3.120 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.266 1.266 23 C 0.073 3.927 24 H 0.089 0.911 25 H 0.042 0.958 26 H 0.043 0.957 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.391 0.609 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.349 0.651 33 H 0.351 0.649 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.017 0.983 37 H 0.011 0.989 38 H 0.264 0.736 39 H 0.092 0.908 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.039 11.787 2.649 22.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.309 6.309 3 C -0.030 4.030 4 C 0.058 3.942 5 O -0.329 6.329 6 C -0.006 4.006 7 N -0.376 5.376 8 C 0.351 3.649 9 O -0.410 6.410 10 C -0.035 4.035 11 H 0.112 0.888 12 N -0.364 5.364 13 C -0.167 4.167 14 C -0.047 4.047 15 C -0.560 4.560 16 H 0.090 0.910 17 C -0.134 4.134 18 N -0.540 5.540 19 Si 0.707 3.293 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.190 1.190 23 C -0.051 4.051 24 H 0.108 0.892 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.241 0.759 30 H 0.107 0.893 31 H 0.114 0.886 32 H 0.162 0.838 33 H 0.166 0.834 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.035 0.965 37 H 0.029 0.971 38 H 0.073 0.927 39 H 0.110 0.890 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -18.308 13.034 2.794 22.647 hybrid contribution -0.020 -1.149 -0.855 1.432 sum -18.328 11.886 1.939 21.931 Atomic orbital electron populations 1.22774 0.80188 1.03202 1.00095 1.87804 1.20428 1.27151 1.95479 1.23003 0.92533 0.85796 1.01676 1.22405 0.89606 0.92271 0.89929 1.86502 1.61505 1.27946 1.56985 1.22918 0.88555 0.93821 0.95287 1.49263 1.08367 1.39520 1.40493 1.20368 0.78697 0.82765 0.83117 1.90651 1.61772 1.34762 1.53826 1.21412 0.94218 0.92420 0.95474 0.88759 1.58729 1.09884 1.53188 1.14565 1.22177 1.01523 0.92826 1.00222 1.19572 0.95536 0.95489 0.94086 1.21070 1.42112 0.95844 0.96961 0.91015 1.25034 0.94789 0.94920 0.98649 1.69914 1.43443 1.04744 1.35858 0.86779 0.79027 0.77813 0.85652 1.20215 1.21327 1.19025 1.23866 0.87391 0.96886 0.96974 0.89236 0.93908 0.93837 0.91820 0.91560 0.75880 0.89333 0.88565 0.83788 0.83416 0.91728 0.92082 0.96455 0.97108 0.92662 0.89003 0.88764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.28 9.85 -48.05 -0.47 -3.76 16 3 C 0.05 0.35 5.69 37.16 0.21 0.56 16 4 C 0.10 1.03 1.84 -89.97 -0.17 0.86 16 5 O -0.52 -6.58 13.56 -48.05 -0.65 -7.23 16 6 C 0.12 1.31 8.04 -8.51 -0.07 1.24 16 7 N -0.64 -9.26 3.69 -185.03 -0.68 -9.94 16 8 C 0.56 10.08 7.33 -10.98 -0.08 10.00 16 9 O -0.53 -11.24 17.03 5.55 0.09 -11.15 16 10 C 0.08 1.40 3.03 -68.86 -0.21 1.19 16 11 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 12 N -0.83 -14.26 8.94 -5.65 -0.05 -14.31 16 13 C -0.13 -2.58 4.78 -26.73 -0.13 -2.71 16 14 C -0.01 -0.22 3.81 -27.88 -0.11 -0.32 16 15 C -0.52 -14.78 9.66 -34.44 -0.33 -15.11 16 16 H 0.07 2.22 7.99 -52.48 -0.42 1.80 16 17 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 18 N -0.90 -27.69 13.96 55.43 0.77 -26.91 16 19 Si 0.88 21.34 27.47 -169.99 -4.67 16.67 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 23 C 0.07 0.82 7.85 -8.37 -0.07 0.75 16 24 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 26 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.36 7.89 -51.93 -0.41 -0.05 16 29 H 0.39 3.94 8.23 45.56 0.38 4.31 16 30 H 0.09 1.10 8.14 -51.92 -0.42 0.68 16 31 H 0.10 0.77 8.10 -51.93 -0.42 0.35 16 32 H 0.35 6.10 8.58 -39.30 -0.34 5.76 16 33 H 0.35 5.72 7.55 -39.29 -0.30 5.42 16 34 H 0.06 1.31 7.72 -51.93 -0.40 0.91 16 35 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 37 H 0.01 0.24 6.30 -51.93 -0.33 -0.08 16 38 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 39 H 0.09 0.78 7.93 -51.93 -0.41 0.37 16 40 H 0.09 1.18 7.72 -51.93 -0.40 0.78 16 LS Contribution 334.28 15.07 5.04 5.04 Total: -1.00 -35.31 334.28 -6.10 -41.41 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -5.55 Total: 10.57 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: 0.07 Total: -0.38 kcal Atomic # 7 Polarization: -51.21 SS G_CDS: 0.04 Total: -51.17 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -1.03 Total: -22.14 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.67 Total: 16.67 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -35.31 -6.10 -41.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691570195.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.422 kcal (2) G-P(sol) polarization free energy of solvation -35.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds