Wall clock time and date at job start Mon Mar 30 2020 05:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 113.99982 * 2 1 4 4 C 1.53000 * 109.47046 * 179.97438 * 3 2 1 5 5 O 1.42897 * 113.41244 * 313.20223 * 4 3 2 6 6 C 1.53492 * 114.20329 * 179.97438 * 4 3 2 7 7 N 1.47073 * 87.98402 * 220.34190 * 6 4 3 8 8 C 1.34775 * 136.05784 * 207.07880 * 7 6 4 9 9 O 1.21283 * 120.00078 * 0.02562 * 8 7 6 10 10 C 1.50707 * 119.99898 * 180.02562 * 8 7 6 11 11 H 1.09002 * 109.46844 * 40.00384 * 10 8 7 12 12 N 1.46897 * 109.46776 * 160.00621 * 10 8 7 13 13 C 1.52999 * 109.46980 * 280.00771 * 10 8 7 14 14 C 1.53006 * 109.46626 * 175.00014 * 13 10 8 15 15 C 1.50699 * 109.46866 * 179.97438 * 14 13 10 16 16 H 1.08003 * 119.99963 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00270 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00302 * 179.97438 * 17 15 14 19 19 Si 1.86805 * 119.99832 * 0.02562 * 17 15 14 20 20 H 1.48506 * 109.47310 * 89.99428 * 19 17 15 21 21 H 1.48491 * 109.47296 * 209.99911 * 19 17 15 22 22 H 1.48502 * 109.46905 * 329.99956 * 19 17 15 23 23 C 1.47063 * 87.88336 * 27.34748 * 7 6 4 24 24 H 1.09000 * 109.47467 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47232 * 300.00304 * 1 2 3 26 26 H 1.09006 * 109.46738 * 60.00402 * 1 2 3 27 27 H 1.09000 * 109.46937 * 59.99611 * 3 2 1 28 28 H 1.09003 * 109.46808 * 299.99902 * 3 2 1 29 29 H 0.96696 * 114.00564 * 46.79543 * 5 4 3 30 30 H 1.09008 * 113.46690 * 105.56856 * 6 4 3 31 31 H 1.08999 * 113.52353 * 335.13086 * 6 4 3 32 32 H 1.00888 * 111.00369 * 60.00291 * 12 10 8 33 33 H 1.00900 * 110.99476 * 183.96192 * 12 10 8 34 34 H 1.08993 * 109.47839 * 55.00083 * 13 10 8 35 35 H 1.09000 * 109.47160 * 294.99645 * 13 10 8 36 36 H 1.09000 * 109.47050 * 299.99699 * 14 13 10 37 37 H 1.09001 * 109.46801 * 59.99811 * 14 13 10 38 38 H 0.97002 * 119.99998 * 179.97438 * 18 17 15 39 39 H 1.09005 * 113.47442 * 87.43301 * 23 7 6 40 40 H 1.09001 * 113.46708 * 217.88126 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 8 4.0302 0.2451 0.9569 6 6 4.2733 2.5306 0.0001 7 7 5.2312 1.9461 -0.9507 8 6 6.5244 2.1471 -1.2726 9 8 7.1664 3.0014 -0.6990 10 6 7.1727 1.3104 -2.3454 11 1 6.4701 1.1634 -3.1657 12 7 8.3715 1.9972 -2.8444 13 6 7.5683 -0.0481 -1.7632 14 6 8.1120 -0.9424 -2.8793 15 6 8.5022 -2.2802 -2.3058 16 1 8.3755 -2.4732 -1.2507 17 6 9.0210 -3.2579 -3.1279 18 7 9.3620 -4.4252 -2.6274 19 14 9.2408 -2.9239 -4.9527 20 1 10.5912 -2.3545 -5.1926 21 1 9.0974 -4.1937 -5.7091 22 1 8.2085 -1.9579 -5.4069 23 6 4.1549 1.0503 -1.4002 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.6885 1.8464 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.5632 -0.6016 0.9544 30 1 4.7170 2.7828 0.9633 31 1 3.6875 3.3477 -0.4210 32 1 9.0387 2.1452 -2.1022 33 1 8.7882 1.4875 -3.6090 34 1 6.6943 -0.5192 -1.3135 35 1 8.3368 0.0923 -1.0031 36 1 7.3434 -1.0827 -3.6394 37 1 8.9860 -0.4712 -3.3290 38 1 9.7267 -5.1132 -3.2059 39 1 3.5370 1.4765 -2.1907 40 1 4.4975 0.0414 -1.6300 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691570195.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:04 Heat of formation + Delta-G solvation = -121.630933 kcal Electronic energy + Delta-G solvation = -21564.135850 eV Core-core repulsion = 18186.275894 eV Total energy + Delta-G solvation = -3377.859955 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.84651 -39.91824 -38.32277 -37.13664 -36.20841 -34.83291 -32.12876 -31.54995 -29.04862 -27.81884 -27.15757 -26.37829 -24.77332 -22.19600 -21.64719 -20.20211 -19.06021 -18.43483 -18.16260 -17.58394 -17.13820 -16.67155 -16.49674 -16.24716 -16.06105 -15.54484 -15.25143 -15.12448 -14.84643 -14.62686 -14.38624 -14.07357 -13.98347 -13.59751 -13.16781 -13.03863 -12.83185 -12.70377 -12.29121 -12.15255 -11.93269 -11.80129 -11.69625 -11.44389 -11.17665 -10.79403 -10.74755 -10.55652 -9.86922 -9.68521 -8.30811 -6.37051 1.37641 1.39161 1.50569 1.51549 1.68101 2.35482 2.62209 2.85722 3.04282 3.25296 3.39841 3.66122 3.89290 4.01244 4.10250 4.11618 4.30847 4.42384 4.46367 4.51041 4.55217 4.56870 4.61050 4.65376 4.72060 4.83565 4.83980 4.89429 4.96434 5.31067 5.41510 5.60059 5.99701 6.16358 6.23696 6.43594 6.58278 6.70701 6.72057 7.05695 7.27642 8.86233 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.016793 B = 0.004780 C = 0.004039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.962946 B = 5855.965919 C = 6930.586386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.414 6.414 3 C 0.056 3.944 4 C 0.104 3.896 5 O -0.552 6.552 6 C 0.113 3.887 7 N -0.647 5.647 8 C 0.551 3.449 9 O -0.577 6.577 10 C 0.090 3.910 11 H 0.116 0.884 12 N -0.828 5.828 13 C -0.114 4.114 14 C -0.002 4.002 15 C -0.537 4.537 16 H 0.023 0.977 17 C 0.004 3.996 18 N -0.952 5.952 19 Si 0.956 3.044 20 H -0.267 1.267 21 H -0.285 1.285 22 H -0.237 1.237 23 C 0.070 3.930 24 H 0.091 0.909 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.076 0.924 28 H 0.095 0.905 29 H 0.398 0.602 30 H 0.069 0.931 31 H 0.138 0.862 32 H 0.345 0.655 33 H 0.357 0.643 34 H 0.056 0.944 35 H 0.037 0.963 36 H 0.032 0.968 37 H 0.025 0.975 38 H 0.267 0.733 39 H 0.131 0.869 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.186 13.422 0.360 25.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.334 6.334 3 C -0.022 4.022 4 C 0.062 3.938 5 O -0.360 6.360 6 C -0.009 4.009 7 N -0.382 5.382 8 C 0.341 3.659 9 O -0.456 6.456 10 C -0.025 4.025 11 H 0.133 0.867 12 N -0.360 5.360 13 C -0.154 4.154 14 C -0.040 4.040 15 C -0.575 4.575 16 H 0.041 0.959 17 C -0.193 4.193 18 N -0.593 5.593 19 Si 0.778 3.222 20 H -0.192 1.192 21 H -0.211 1.211 22 H -0.160 1.160 23 C -0.053 4.053 24 H 0.110 0.890 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.094 0.906 28 H 0.113 0.887 29 H 0.250 0.750 30 H 0.088 0.912 31 H 0.156 0.844 32 H 0.158 0.842 33 H 0.172 0.828 34 H 0.075 0.925 35 H 0.056 0.944 36 H 0.050 0.950 37 H 0.043 0.957 38 H 0.076 0.924 39 H 0.149 0.851 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -20.521 14.668 0.513 25.230 hybrid contribution 0.575 -1.729 0.000 1.822 sum -19.946 12.939 0.513 23.781 Atomic orbital electron populations 1.22925 0.78738 1.03826 1.01219 1.87769 1.22012 1.27881 1.95733 1.22955 0.89775 0.85789 1.03654 1.22461 0.91755 0.90964 0.88634 1.86465 1.62654 1.28919 1.58003 1.23278 0.87969 0.95549 0.94120 1.49369 1.08126 1.39947 1.40731 1.20354 0.79896 0.82553 0.83053 1.90622 1.63141 1.36603 1.55242 1.21306 0.94815 0.90456 0.95940 0.86667 1.58746 1.09822 1.52921 1.14549 1.21967 1.00318 0.94317 0.98833 1.19475 0.96404 0.93146 0.94931 1.21395 1.42310 0.98665 0.95088 0.95902 1.26084 0.94187 0.94337 1.04669 1.70085 1.44813 1.06167 1.38189 0.85587 0.80063 0.78358 0.78199 1.19178 1.21112 1.16021 1.24196 0.86521 0.95770 0.98774 0.89016 0.92982 0.92467 0.90579 0.88750 0.75046 0.91207 0.84416 0.84171 0.82785 0.92536 0.94432 0.94981 0.95693 0.92429 0.85098 0.90448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 113.37 1.25 1.50 16 2 O -0.41 -6.03 9.85 -136.72 -1.35 -7.37 16 3 C 0.06 0.63 5.69 71.98 0.41 1.04 16 4 C 0.10 1.93 1.84 -10.37 -0.02 1.91 16 5 O -0.55 -13.89 13.56 -136.72 -1.85 -15.75 16 6 C 0.11 2.31 8.04 83.18 0.67 2.97 16 7 N -0.65 -17.84 3.69 -858.18 -3.16 -21.00 16 8 C 0.55 19.53 7.33 87.66 0.64 20.17 16 9 O -0.58 -24.40 17.03 -3.04 -0.05 -24.46 16 10 C 0.09 3.04 3.03 44.17 0.13 3.17 16 11 H 0.12 3.41 8.14 -2.39 -0.02 3.39 16 12 N -0.83 -27.27 8.94 -171.80 -1.54 -28.80 16 13 C -0.11 -4.64 4.78 30.60 0.15 -4.50 16 14 C 0.00 -0.10 3.81 29.85 0.11 0.02 16 15 C -0.54 -31.10 9.66 25.60 0.25 -30.85 16 16 H 0.02 1.49 7.99 -2.91 -0.02 1.47 16 17 C 0.00 0.23 5.47 84.65 0.46 0.70 16 18 N -0.95 -60.04 13.96 21.45 0.30 -59.74 16 19 Si 0.96 43.07 27.47 68.60 1.88 44.96 16 20 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 21 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 22 H -0.24 -9.55 6.54 99.48 0.65 -8.90 16 23 C 0.07 1.41 7.85 83.27 0.65 2.06 16 24 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 26 H 0.06 0.34 8.14 -2.38 -0.02 0.32 16 27 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.09 0.56 7.89 -2.39 -0.02 0.54 16 29 H 0.40 8.16 8.23 -74.06 -0.61 7.55 16 30 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 31 H 0.14 1.68 8.10 -2.39 -0.02 1.66 16 32 H 0.35 11.96 8.58 -89.70 -0.77 11.19 16 33 H 0.36 10.81 7.55 -89.69 -0.68 10.13 16 34 H 0.06 2.35 7.72 -2.39 -0.02 2.33 16 35 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.03 1.37 7.20 -2.39 -0.02 1.35 16 37 H 0.02 1.07 6.30 -2.39 -0.02 1.05 16 38 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 39 H 0.13 1.65 7.93 -2.38 -0.02 1.63 16 40 H 0.08 1.85 7.72 -2.39 -0.02 1.83 16 Total: -1.00 -79.31 334.28 -2.11 -81.42 By element: Atomic # 1 Polarization: 33.60 SS G_CDS: -1.05 Total: 32.56 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: 4.71 Total: -1.81 kcal Atomic # 7 Polarization: -105.14 SS G_CDS: -4.40 Total: -109.54 kcal Atomic # 8 Polarization: -44.32 SS G_CDS: -3.25 Total: -47.57 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 1.88 Total: 44.96 kcal Total: -79.31 -2.11 -81.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691570195.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.213 kcal (2) G-P(sol) polarization free energy of solvation -79.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds