Wall clock time and date at job start Mon Mar 30 2020 04:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 120.00357 * 2 1 4 4 H 1.48507 * 109.46862 * 239.99729 * 3 2 1 5 5 H 1.48501 * 109.47096 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47567 * 120.00018 * 3 2 1 7 7 C 1.37883 * 119.99542 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99651 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00070 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47193 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47386 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.46779 * 54.99712 * 11 10 9 13 13 N 1.46898 * 109.47134 * 294.99967 * 11 10 9 14 14 C 1.50699 * 109.47183 * 174.99672 * 11 10 9 15 15 O 1.21285 * 119.99711 * 99.99991 * 14 11 10 16 16 N 1.34769 * 120.00169 * 280.00364 * 14 11 10 17 17 C 1.46503 * 120.00118 * 175.23487 * 16 14 11 18 18 C 1.53006 * 110.45092 * 297.93452 * 17 16 14 19 19 O 1.42896 * 109.47110 * 305.26912 * 18 17 16 20 20 C 1.54504 * 110.51225 * 60.53507 * 17 16 14 21 21 C 1.54480 * 104.06076 * 118.64884 * 20 17 16 22 22 O 1.44423 * 104.80230 * 336.02283 * 21 20 17 23 23 C 1.44782 * 105.29827 * 40.54859 * 22 21 20 24 24 H 0.97000 * 119.99556 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.47797 * 59.99896 * 9 7 2 26 26 H 1.09000 * 109.47259 * 299.99752 * 9 7 2 27 27 H 1.08999 * 109.47094 * 59.99990 * 10 9 7 28 28 H 1.09000 * 109.46792 * 300.00009 * 10 9 7 29 29 H 1.00900 * 111.00162 * 176.04030 * 13 11 10 30 30 H 1.00901 * 111.00101 * 299.99956 * 13 11 10 31 31 H 0.96995 * 119.99931 * 354.95251 * 16 14 11 32 32 H 1.08999 * 109.46994 * 65.27349 * 18 17 16 33 33 H 1.09007 * 109.46840 * 185.26970 * 18 17 16 34 34 H 0.96698 * 113.99844 * 180.02562 * 19 18 17 35 35 H 1.09004 * 110.51459 * 237.29317 * 20 17 16 36 36 H 1.09002 * 110.51703 * 359.86723 * 20 17 16 37 37 H 1.09002 * 110.37103 * 94.85566 * 21 20 17 38 38 H 1.09004 * 110.37297 * 217.19002 * 21 20 17 39 39 H 1.08992 * 110.48701 * 200.67770 * 23 22 21 40 40 H 1.08994 * 110.42897 * 78.21731 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2450 -3.6621 0.0018 11 6 1.4800 -4.9872 0.0025 12 1 0.7882 -5.0076 -0.8396 13 7 0.7277 -5.1176 1.2574 14 6 2.4546 -6.1300 -0.1202 15 8 2.7860 -6.7529 0.8664 16 7 2.9580 -6.4599 -1.3260 17 6 3.9833 -7.5010 -1.4319 18 6 5.2432 -7.0903 -0.6670 19 8 5.6875 -5.8140 -1.1314 20 6 3.4435 -8.8483 -0.9022 21 6 3.5126 -9.7877 -2.1266 22 8 3.4766 -8.9065 -3.2703 23 6 4.3174 -7.7831 -2.9135 24 1 -0.4849 0.8401 -0.0004 25 1 0.6245 -2.5571 -0.8896 26 1 0.6239 -2.5567 0.8903 27 1 2.8710 -3.6040 0.8923 28 1 2.8724 -3.6048 -0.8877 29 1 0.1632 -5.9539 1.2554 30 1 1.3472 -5.1013 2.0537 31 1 2.6385 -6.0109 -2.1242 32 1 5.0187 -7.0316 0.3980 33 1 6.0263 -7.8302 -0.8330 34 1 6.4844 -5.4904 -0.6896 35 1 4.0756 -9.2231 -0.0971 36 1 2.4145 -8.7394 -0.5594 37 1 4.4417 -10.3576 -2.1156 38 1 2.6544 -10.4598 -2.1382 39 1 4.0766 -6.9161 -3.5284 40 1 5.3696 -8.0459 -3.0217 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691574955.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:24 Heat of formation + Delta-G solvation = -138.456902 kcal Electronic energy + Delta-G solvation = -21940.923184 eV Core-core repulsion = 18562.333600 eV Total energy + Delta-G solvation = -3378.589584 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.75774 -38.90315 -36.80510 -35.19323 -34.39654 -32.77138 -31.40994 -30.06264 -29.45601 -26.32251 -25.81744 -23.79074 -23.00745 -21.15055 -20.04881 -19.56718 -17.62421 -17.28689 -16.70775 -16.16860 -16.08433 -15.92701 -15.35764 -15.12529 -14.65017 -14.38420 -14.17410 -13.84962 -13.40524 -13.16207 -12.60741 -12.41763 -12.25890 -12.03261 -11.86364 -11.52299 -11.43315 -11.23371 -10.85121 -10.64073 -10.54447 -10.27554 -10.11645 -9.91115 -9.74585 -9.32304 -9.05606 -8.97240 -8.31503 -8.16883 -5.90728 -3.92615 2.77827 3.17652 3.38086 3.42402 3.44915 3.55843 3.95656 4.27308 4.48179 4.52656 4.77120 4.86706 4.91706 4.95332 5.05690 5.13475 5.31331 5.39687 5.42904 5.44706 5.49889 5.57293 5.62793 5.80680 5.89473 6.37067 6.50053 6.55698 6.71638 7.14016 7.40423 7.46995 7.63253 7.79344 7.82055 7.99860 8.16619 8.34181 8.52191 9.15197 9.70176 11.20249 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.026325 B = 0.004171 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.376587 B = 6710.978289 C = 7111.873957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.521 4.521 8 H 0.051 0.949 9 C 0.031 3.969 10 C -0.092 4.092 11 C 0.079 3.921 12 H 0.096 0.904 13 N -0.807 5.807 14 C 0.490 3.510 15 O -0.556 6.556 16 N -0.708 5.708 17 C 0.148 3.852 18 C 0.071 3.929 19 O -0.562 6.562 20 C -0.148 4.148 21 C 0.043 3.957 22 O -0.372 6.372 23 C 0.050 3.950 24 H 0.260 0.740 25 H 0.012 0.988 26 H 0.034 0.966 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.333 0.667 30 H 0.347 0.653 31 H 0.405 0.595 32 H 0.066 0.934 33 H 0.050 0.950 34 H 0.381 0.619 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.061 0.939 38 H 0.094 0.906 39 H 0.103 0.897 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.361 -19.221 -3.808 21.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.717 3.283 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.560 4.560 8 H 0.069 0.931 9 C -0.006 4.006 10 C -0.130 4.130 11 C -0.037 4.037 12 H 0.114 0.886 13 N -0.334 5.334 14 C 0.276 3.724 15 O -0.434 6.434 16 N -0.360 5.360 17 C 0.060 3.940 18 C -0.008 4.008 19 O -0.368 6.368 20 C -0.187 4.187 21 C -0.034 4.034 22 O -0.291 6.291 23 C -0.027 4.027 24 H 0.069 0.931 25 H 0.031 0.969 26 H 0.052 0.948 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.144 0.856 30 H 0.161 0.839 31 H 0.240 0.760 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.228 0.772 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.079 0.921 38 H 0.112 0.888 39 H 0.121 0.879 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.444 -18.927 -3.884 21.086 hybrid contribution 1.572 0.299 0.342 1.637 sum 10.016 -18.628 -3.542 21.445 Atomic orbital electron populations 1.69967 1.05949 1.26475 1.50872 1.24988 0.94797 0.99013 0.95522 0.86713 0.79606 0.83458 0.78503 1.20365 1.21353 1.20362 1.21243 0.92855 0.91330 1.50541 0.93055 1.19013 0.93580 0.89892 0.98106 1.21617 0.98697 0.91921 1.00752 1.21831 0.93560 0.93386 0.94935 0.88632 1.58993 1.26926 1.44226 1.03286 1.22684 0.82078 0.85170 0.82423 1.90600 1.61619 1.54003 1.37227 1.46071 1.40601 1.39320 1.10032 1.21620 0.87918 0.88529 0.95913 1.22520 0.93916 0.85481 0.98846 1.86489 1.48942 1.35319 1.66010 1.23207 1.03748 0.93308 0.98420 1.23489 1.02111 0.93167 0.84607 1.89226 1.69145 1.32903 1.37823 1.23702 0.95370 0.90435 0.93204 0.93079 0.96934 0.94774 0.93079 0.92587 0.85575 0.83923 0.75974 0.91556 0.93212 0.77226 0.89714 0.89438 0.92082 0.88787 0.87877 0.90670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.19 13.29 55.43 0.74 -26.45 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.52 -14.91 9.11 -34.44 -0.31 -15.23 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 9 C 0.03 0.81 4.86 -27.89 -0.14 0.67 16 10 C -0.09 -1.89 4.78 -26.73 -0.13 -2.01 16 11 C 0.08 1.34 3.15 -68.86 -0.22 1.12 16 12 H 0.10 1.56 8.14 -51.93 -0.42 1.13 16 13 N -0.81 -13.65 8.44 -5.66 -0.05 -13.70 16 14 C 0.49 7.57 6.27 -10.99 -0.07 7.50 16 15 O -0.56 -9.46 13.62 5.55 0.08 -9.39 16 16 N -0.71 -9.21 4.90 -46.16 -0.23 -9.44 16 17 C 0.15 1.67 0.77 -130.25 -0.10 1.57 16 18 C 0.07 0.79 5.47 37.16 0.20 0.99 16 19 O -0.56 -6.60 13.32 -35.23 -0.47 -7.07 16 20 C -0.15 -1.54 5.50 -25.17 -0.14 -1.68 16 21 C 0.04 0.38 7.63 37.93 0.29 0.67 16 22 O -0.37 -4.17 11.66 -35.23 -0.41 -4.58 16 23 C 0.05 0.50 6.75 37.93 0.26 0.76 16 24 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 25 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.03 0.96 7.75 -51.93 -0.40 0.55 16 27 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 28 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.33 4.88 9.06 -39.29 -0.36 4.52 16 30 H 0.35 5.94 8.58 -39.29 -0.34 5.60 16 31 H 0.40 4.88 8.29 -40.82 -0.34 4.55 16 32 H 0.07 0.87 6.71 -51.93 -0.35 0.52 16 33 H 0.05 0.42 8.03 -51.93 -0.42 0.00 16 34 H 0.38 3.02 9.12 45.56 0.42 3.43 16 35 H 0.08 0.81 7.73 -51.93 -0.40 0.41 16 36 H 0.09 1.07 7.18 -51.93 -0.37 0.70 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.10 1.02 7.76 -51.93 -0.40 0.62 16 40 H 0.08 0.65 7.79 -51.93 -0.40 0.25 16 LS Contribution 328.74 15.07 4.95 4.95 Total: -1.00 -33.74 328.74 -6.30 -40.04 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -5.44 Total: 12.77 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: -0.45 Total: -4.05 kcal Atomic # 7 Polarization: -50.05 SS G_CDS: 0.46 Total: -49.59 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: -0.80 Total: -21.04 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.74 -6.30 -40.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691574955.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.414 kcal (2) G-P(sol) polarization free energy of solvation -33.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds