Wall clock time and date at job start Mon Mar 30 2020 04:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 120.00357 * 2 1 4 4 H 1.48507 * 109.46862 * 239.99729 * 3 2 1 5 5 H 1.48501 * 109.47096 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47567 * 120.00018 * 3 2 1 7 7 C 1.37883 * 119.99542 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99651 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00070 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47193 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47386 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.46779 * 54.99712 * 11 10 9 13 13 N 1.46898 * 109.47134 * 294.99967 * 11 10 9 14 14 C 1.50699 * 109.47183 * 174.99672 * 11 10 9 15 15 O 1.21285 * 119.99711 * 99.99991 * 14 11 10 16 16 N 1.34769 * 120.00169 * 280.00364 * 14 11 10 17 17 C 1.46503 * 120.00118 * 175.23487 * 16 14 11 18 18 C 1.53006 * 110.45092 * 297.93452 * 17 16 14 19 19 O 1.42896 * 109.47110 * 305.26912 * 18 17 16 20 20 C 1.54504 * 110.51225 * 60.53507 * 17 16 14 21 21 C 1.54480 * 104.06076 * 118.64884 * 20 17 16 22 22 O 1.44423 * 104.80230 * 336.02283 * 21 20 17 23 23 C 1.44782 * 105.29827 * 40.54859 * 22 21 20 24 24 H 0.97000 * 119.99556 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.47797 * 59.99896 * 9 7 2 26 26 H 1.09000 * 109.47259 * 299.99752 * 9 7 2 27 27 H 1.08999 * 109.47094 * 59.99990 * 10 9 7 28 28 H 1.09000 * 109.46792 * 300.00009 * 10 9 7 29 29 H 1.00900 * 111.00162 * 176.04030 * 13 11 10 30 30 H 1.00901 * 111.00101 * 299.99956 * 13 11 10 31 31 H 0.96995 * 119.99931 * 354.95251 * 16 14 11 32 32 H 1.08999 * 109.46994 * 65.27349 * 18 17 16 33 33 H 1.09007 * 109.46840 * 185.26970 * 18 17 16 34 34 H 0.96698 * 113.99844 * 180.02562 * 19 18 17 35 35 H 1.09004 * 110.51459 * 237.29317 * 20 17 16 36 36 H 1.09002 * 110.51703 * 359.86723 * 20 17 16 37 37 H 1.09002 * 110.37103 * 94.85566 * 21 20 17 38 38 H 1.09004 * 110.37297 * 217.19002 * 21 20 17 39 39 H 1.08992 * 110.48701 * 200.67770 * 23 22 21 40 40 H 1.08994 * 110.42897 * 78.21731 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2450 -3.6621 0.0018 11 6 1.4800 -4.9872 0.0025 12 1 0.7882 -5.0076 -0.8396 13 7 0.7277 -5.1176 1.2574 14 6 2.4546 -6.1300 -0.1202 15 8 2.7860 -6.7529 0.8664 16 7 2.9580 -6.4599 -1.3260 17 6 3.9833 -7.5010 -1.4319 18 6 5.2432 -7.0903 -0.6670 19 8 5.6875 -5.8140 -1.1314 20 6 3.4435 -8.8483 -0.9022 21 6 3.5126 -9.7877 -2.1266 22 8 3.4766 -8.9065 -3.2703 23 6 4.3174 -7.7831 -2.9135 24 1 -0.4849 0.8401 -0.0004 25 1 0.6245 -2.5571 -0.8896 26 1 0.6239 -2.5567 0.8903 27 1 2.8710 -3.6040 0.8923 28 1 2.8724 -3.6048 -0.8877 29 1 0.1632 -5.9539 1.2554 30 1 1.3472 -5.1013 2.0537 31 1 2.6385 -6.0109 -2.1242 32 1 5.0187 -7.0316 0.3980 33 1 6.0263 -7.8302 -0.8330 34 1 6.4844 -5.4904 -0.6896 35 1 4.0756 -9.2231 -0.0971 36 1 2.4145 -8.7394 -0.5594 37 1 4.4417 -10.3576 -2.1156 38 1 2.6544 -10.4598 -2.1382 39 1 4.0766 -6.9161 -3.5284 40 1 5.3696 -8.0459 -3.0217 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691574955.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:24 Heat of formation + Delta-G solvation = -168.355615 kcal Electronic energy + Delta-G solvation = -21942.219690 eV Core-core repulsion = 18562.333600 eV Total energy + Delta-G solvation = -3379.886089 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.75816 -39.97088 -37.68181 -36.75639 -35.44318 -34.80283 -32.34225 -31.91938 -30.28221 -28.06981 -26.64702 -25.51791 -23.77076 -22.69380 -21.46663 -20.68802 -18.72140 -18.48286 -18.02051 -17.70742 -17.09455 -16.85102 -16.54491 -16.49517 -16.13607 -15.49824 -15.37574 -15.14929 -14.75678 -14.27126 -13.97785 -13.81451 -13.45739 -13.42388 -13.24224 -12.77386 -12.74773 -12.49549 -12.27728 -12.19881 -12.05305 -11.73096 -11.60036 -11.26668 -11.09141 -10.87120 -10.79253 -10.47938 -10.12886 -9.58566 -8.13034 -6.23469 1.41950 1.45029 1.51864 1.54129 2.10813 2.45395 2.80192 3.19134 3.19805 3.43817 3.58874 3.71117 3.83825 4.02497 4.11127 4.13059 4.23937 4.33753 4.38044 4.44641 4.62107 4.67450 4.75439 4.80584 4.82916 4.94981 5.00150 5.26101 5.45606 5.57314 5.70492 5.84413 5.98887 6.10171 6.31258 6.45781 6.54046 6.79012 6.94679 7.15563 7.44495 8.98133 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.026325 B = 0.004171 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.376587 B = 6710.978289 C = 7111.873957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.002 3.998 3 Si 0.960 3.040 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.544 4.544 8 H 0.055 0.945 9 C 0.039 3.961 10 C -0.074 4.074 11 C 0.084 3.916 12 H 0.102 0.898 13 N -0.818 5.818 14 C 0.497 3.503 15 O -0.571 6.571 16 N -0.700 5.700 17 C 0.138 3.862 18 C 0.074 3.926 19 O -0.581 6.581 20 C -0.145 4.145 21 C 0.045 3.955 22 O -0.391 6.391 23 C 0.054 3.946 24 H 0.262 0.738 25 H -0.009 1.009 26 H 0.006 0.994 27 H 0.040 0.960 28 H 0.062 0.938 29 H 0.346 0.654 30 H 0.345 0.655 31 H 0.409 0.591 32 H 0.042 0.958 33 H 0.081 0.919 34 H 0.395 0.605 35 H 0.092 0.908 36 H 0.065 0.935 37 H 0.085 0.915 38 H 0.103 0.897 39 H 0.102 0.898 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.096 -19.895 -4.529 23.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.785 3.215 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.582 4.582 8 H 0.073 0.927 9 C 0.002 3.998 10 C -0.113 4.113 11 C -0.032 4.032 12 H 0.120 0.880 13 N -0.347 5.347 14 C 0.282 3.718 15 O -0.451 6.451 16 N -0.352 5.352 17 C 0.051 3.949 18 C -0.004 4.004 19 O -0.388 6.388 20 C -0.184 4.184 21 C -0.031 4.031 22 O -0.310 6.310 23 C -0.023 4.023 24 H 0.071 0.929 25 H 0.010 0.990 26 H 0.024 0.976 27 H 0.059 0.941 28 H 0.081 0.919 29 H 0.159 0.841 30 H 0.159 0.841 31 H 0.245 0.755 32 H 0.060 0.940 33 H 0.099 0.901 34 H 0.245 0.755 35 H 0.111 0.889 36 H 0.084 0.916 37 H 0.103 0.897 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 10.202 -19.624 -4.624 22.595 hybrid contribution 1.019 0.475 0.564 1.258 sum 11.221 -19.148 -4.060 22.562 Atomic orbital electron populations 1.70103 1.07674 1.27581 1.51702 1.25911 0.95702 1.03055 0.94929 0.85580 0.78334 0.78522 0.79062 1.19129 1.20880 1.19496 1.21690 0.93308 0.92723 1.50477 0.92689 1.18827 0.93881 0.91478 0.95597 1.21296 0.97472 0.92022 1.00484 1.21598 0.93822 0.92415 0.95316 0.87964 1.58952 1.27241 1.45311 1.03186 1.22139 0.81832 0.84786 0.83020 1.90597 1.62032 1.54534 1.37930 1.46026 1.40466 1.39412 1.09275 1.21901 0.87534 0.88232 0.97236 1.22505 0.94619 0.86101 0.97210 1.86444 1.50076 1.35848 1.66466 1.23162 1.02492 0.93323 0.99412 1.23622 1.03852 0.92673 0.82977 1.89210 1.69609 1.33473 1.38739 1.23732 0.96265 0.90317 0.91950 0.92926 0.99046 0.97606 0.94080 0.91947 0.84089 0.84119 0.75475 0.93955 0.90057 0.75498 0.88907 0.91589 0.89672 0.87891 0.88012 0.88692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.43 13.29 21.45 0.28 -57.14 16 2 C 0.00 0.10 5.46 84.66 0.46 0.57 16 3 Si 0.96 44.84 29.54 68.60 2.03 46.87 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 6 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 7 C -0.54 -31.40 9.11 25.60 0.23 -31.17 16 8 H 0.05 3.06 7.74 -2.91 -0.02 3.04 16 9 C 0.04 2.09 4.86 29.85 0.15 2.24 16 10 C -0.07 -3.09 4.78 30.60 0.15 -2.94 16 11 C 0.08 2.87 3.15 44.17 0.14 3.01 16 12 H 0.10 3.33 8.14 -2.39 -0.02 3.31 16 13 N -0.82 -27.99 8.44 -171.81 -1.45 -29.44 16 14 C 0.50 15.11 6.27 87.66 0.55 15.66 16 15 O -0.57 -19.20 13.62 -3.05 -0.04 -19.24 16 16 N -0.70 -17.55 4.90 -418.34 -2.05 -19.60 16 17 C 0.14 2.87 0.77 4.62 0.00 2.88 16 18 C 0.07 1.49 5.47 71.98 0.39 1.89 16 19 O -0.58 -12.58 13.32 -148.98 -1.98 -14.56 16 20 C -0.15 -2.77 5.50 31.61 0.17 -2.60 16 21 C 0.05 0.69 7.63 72.49 0.55 1.24 16 22 O -0.39 -7.90 11.66 -148.98 -1.74 -9.64 16 23 C 0.05 0.97 6.75 72.48 0.49 1.46 16 24 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 25 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 26 H 0.01 0.32 7.75 -2.39 -0.02 0.30 16 27 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 29 H 0.35 10.13 9.06 -89.69 -0.81 9.32 16 30 H 0.35 11.98 8.58 -89.69 -0.77 11.21 16 31 H 0.41 9.48 8.29 -92.71 -0.77 8.71 16 32 H 0.04 1.06 6.71 -2.39 -0.02 1.05 16 33 H 0.08 1.12 8.03 -2.38 -0.02 1.10 16 34 H 0.40 5.59 9.12 -74.06 -0.68 4.91 16 35 H 0.09 1.60 7.73 -2.38 -0.02 1.58 16 36 H 0.07 1.56 7.18 -2.39 -0.02 1.54 16 37 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.10 1.83 7.76 -2.39 -0.02 1.81 16 40 H 0.10 1.34 7.79 -2.39 -0.02 1.32 16 Total: -1.00 -72.20 328.74 -3.60 -75.80 By element: Atomic # 1 Polarization: 36.68 SS G_CDS: -1.94 Total: 34.73 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: 3.29 Total: -7.78 kcal Atomic # 7 Polarization: -102.97 SS G_CDS: -3.21 Total: -106.18 kcal Atomic # 8 Polarization: -39.68 SS G_CDS: -3.76 Total: -43.45 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -72.20 -3.60 -75.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691574955.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.554 kcal (2) G-P(sol) polarization free energy of solvation -72.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds