Wall clock time and date at job start Mon Mar 30 2020 04:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86808 * 120.00053 * 2 1 4 4 H 1.48504 * 109.47165 * 240.00344 * 3 2 1 5 5 H 1.48503 * 109.47060 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47276 * 120.00492 * 3 2 1 7 7 C 1.37873 * 120.00209 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00637 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99966 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47328 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47355 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.46919 * 305.00105 * 11 10 9 13 13 N 1.46901 * 109.47116 * 64.99795 * 11 10 9 14 14 C 1.50698 * 109.47516 * 184.99864 * 11 10 9 15 15 O 1.21281 * 119.99781 * 260.00451 * 14 11 10 16 16 N 1.34777 * 119.99834 * 79.99286 * 14 11 10 17 17 C 1.46504 * 119.99866 * 174.96702 * 16 14 11 18 18 C 1.53005 * 110.45028 * 67.27250 * 17 16 14 19 19 O 1.42903 * 109.47161 * 54.78319 * 18 17 16 20 20 C 1.54505 * 110.51763 * 304.67185 * 17 16 14 21 21 C 1.54472 * 104.06232 * 241.35442 * 20 17 16 22 22 O 1.44429 * 104.80513 * 23.97516 * 21 20 17 23 23 C 1.44424 * 105.27289 * 319.48703 * 22 21 20 24 24 H 0.97008 * 120.00173 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.47023 * 59.99161 * 9 7 2 26 26 H 1.08996 * 109.46424 * 299.99860 * 9 7 2 27 27 H 1.09001 * 109.47207 * 59.99389 * 10 9 7 28 28 H 1.09006 * 109.46963 * 299.99779 * 10 9 7 29 29 H 1.00903 * 110.99855 * 296.05470 * 13 11 10 30 30 H 1.00904 * 110.99935 * 59.99892 * 13 11 10 31 31 H 0.96999 * 120.00233 * 354.98363 * 16 14 11 32 32 H 1.09006 * 109.46613 * 174.77790 * 18 17 16 33 33 H 1.08994 * 109.47519 * 294.77730 * 18 17 16 34 34 H 0.96692 * 113.99677 * 180.02562 * 19 18 17 35 35 H 1.09004 * 110.50759 * 359.97438 * 20 17 16 36 36 H 1.08997 * 110.51366 * 122.56518 * 20 17 16 37 37 H 1.09004 * 110.37475 * 142.80398 * 21 20 17 38 38 H 1.08995 * 110.37222 * 265.14108 * 21 20 17 39 39 H 1.09000 * 110.37554 * 281.68452 * 23 22 21 40 40 H 1.09001 * 110.36943 * 159.34266 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6620 -0.0027 11 6 1.4802 -4.9871 -0.0033 12 1 0.7884 -5.0075 0.8388 13 7 0.7280 -5.1177 -1.2583 14 6 2.4548 -6.1299 0.1195 15 8 2.7863 -6.7528 -0.8670 16 7 2.9582 -6.4596 1.3255 17 6 3.8185 -7.6375 1.4630 18 6 5.1446 -7.4193 0.7317 19 8 5.7574 -6.2181 1.2048 20 6 3.1034 -8.8963 0.9232 21 6 3.0027 -9.8268 2.1521 22 8 3.0643 -8.9413 3.2914 23 6 4.0653 -7.9564 2.9542 24 1 -0.4851 0.8401 0.0004 25 1 0.6246 -2.5562 -0.8919 26 1 0.6241 -2.5574 0.8880 27 1 2.8719 -3.6050 0.8872 28 1 2.8718 -3.6035 -0.8927 29 1 0.0233 -4.3996 -1.3339 30 1 1.3476 -5.1015 -2.0546 31 1 2.7508 -5.9172 2.1024 32 1 5.8071 -8.2640 0.9209 33 1 4.9596 -7.3355 -0.3391 34 1 6.6040 -6.0162 0.7835 35 1 2.1096 -8.6423 0.5543 36 1 3.6946 -9.3631 0.1354 37 1 2.0561 -10.3672 2.1423 38 1 3.8392 -10.5253 2.1687 39 1 5.0649 -8.3681 3.0937 40 1 3.9351 -7.0601 3.5606 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691574958.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:27 Heat of formation + Delta-G solvation = -139.749493 kcal Electronic energy + Delta-G solvation = -21901.340885 eV Core-core repulsion = 18522.695251 eV Total energy + Delta-G solvation = -3378.645635 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.68325 -38.78365 -36.79062 -35.45034 -34.30215 -32.83399 -31.35760 -29.86506 -29.42287 -26.41686 -25.76853 -23.95361 -22.96938 -21.19935 -20.14113 -19.45203 -17.60390 -17.37460 -16.69701 -16.22904 -16.06753 -15.86059 -15.05007 -14.78245 -14.48428 -14.44855 -14.25091 -13.79586 -13.23743 -13.11315 -12.89912 -12.52516 -12.29925 -12.11161 -11.82575 -11.65967 -11.36891 -11.20092 -11.05664 -10.89360 -10.68735 -10.20397 -10.04707 -9.95467 -9.80191 -9.25646 -9.14336 -8.96501 -8.41957 -8.16356 -6.06549 -4.09588 2.94287 3.18428 3.29801 3.34471 3.37044 3.62304 4.00792 4.30958 4.40982 4.55407 4.83854 4.92301 4.98754 5.02796 5.17067 5.22952 5.29619 5.35220 5.46630 5.47934 5.55396 5.63711 5.69003 5.80976 5.90883 6.33623 6.44313 6.55992 6.63000 6.91071 7.45375 7.48085 7.53866 7.64196 7.73950 7.90252 7.92130 8.33439 8.49389 8.96151 9.55123 11.04360 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.026223 B = 0.004102 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.515249 B = 6824.297127 C = 7170.992915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.024 3.976 10 C -0.135 4.135 11 C 0.074 3.926 12 H 0.096 0.904 13 N -0.830 5.830 14 C 0.532 3.468 15 O -0.540 6.540 16 N -0.713 5.713 17 C 0.151 3.849 18 C 0.071 3.929 19 O -0.564 6.564 20 C -0.150 4.150 21 C 0.044 3.956 22 O -0.371 6.371 23 C 0.050 3.950 24 H 0.262 0.738 25 H 0.017 0.983 26 H 0.018 0.982 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.354 0.646 30 H 0.344 0.656 31 H 0.404 0.596 32 H 0.049 0.951 33 H 0.068 0.932 34 H 0.380 0.620 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.061 0.939 39 H 0.074 0.926 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.747 -17.761 3.847 20.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.175 4.175 11 C -0.041 4.041 12 H 0.114 0.886 13 N -0.362 5.362 14 C 0.319 3.681 15 O -0.416 6.416 16 N -0.366 5.366 17 C 0.064 3.936 18 C -0.008 4.008 19 O -0.369 6.369 20 C -0.188 4.188 21 C -0.033 4.033 22 O -0.290 6.290 23 C -0.027 4.027 24 H 0.072 0.928 25 H 0.035 0.965 26 H 0.037 0.963 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.169 0.831 30 H 0.158 0.842 31 H 0.239 0.761 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.226 0.774 35 H 0.109 0.891 36 H 0.104 0.896 37 H 0.113 0.887 38 H 0.079 0.921 39 H 0.092 0.908 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 7.904 -18.817 3.982 20.794 hybrid contribution 1.422 2.214 -0.414 2.664 sum 9.326 -16.603 3.568 19.375 Atomic orbital electron populations 1.69940 1.06017 1.26860 1.50441 1.25005 0.94860 0.99267 0.95144 0.86646 0.79594 0.83048 0.78652 1.20254 1.21222 1.20208 1.21148 0.92986 0.90911 1.51124 0.92779 1.19101 0.93730 0.91161 0.97296 1.22353 0.99765 0.93868 1.01521 1.21474 0.94663 0.92430 0.95520 0.88643 1.58755 1.18418 1.55871 1.03174 1.20825 0.80644 0.84278 0.82306 1.90587 1.60286 1.53785 1.36974 1.45912 1.50759 1.28709 1.11199 1.21584 0.89472 0.86753 0.95801 1.22574 0.92262 0.86945 0.99027 1.86478 1.39999 1.43092 1.67358 1.23216 1.02994 0.94243 0.98366 1.23493 1.02413 0.92836 0.84595 1.89172 1.59189 1.41648 1.38969 1.23630 0.92619 0.93205 0.93228 0.92845 0.96479 0.96345 0.92430 0.92826 0.83092 0.84249 0.76071 0.93271 0.91417 0.77362 0.89113 0.89598 0.88725 0.92115 0.90773 0.88017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.52 9.11 -34.44 -0.31 -14.83 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.60 4.74 -27.88 -0.13 0.46 16 10 C -0.14 -2.71 4.78 -26.74 -0.13 -2.84 16 11 C 0.07 1.28 3.21 -68.87 -0.22 1.06 16 12 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 13 N -0.83 -14.40 8.94 -5.65 -0.05 -14.45 16 14 C 0.53 8.72 6.18 -10.99 -0.07 8.65 16 15 O -0.54 -9.85 13.66 5.56 0.08 -9.78 16 16 N -0.71 -9.70 4.91 -46.16 -0.23 -9.93 16 17 C 0.15 1.77 0.77 -130.25 -0.10 1.67 16 18 C 0.07 0.79 5.56 37.16 0.21 0.99 16 19 O -0.56 -6.51 13.32 -35.23 -0.47 -6.98 16 20 C -0.15 -1.65 5.48 -25.17 -0.14 -1.79 16 21 C 0.04 0.41 7.63 37.93 0.29 0.70 16 22 O -0.37 -4.32 11.65 -35.23 -0.41 -4.73 16 23 C 0.05 0.52 6.75 37.93 0.26 0.78 16 24 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 25 H 0.02 0.43 6.87 -51.93 -0.36 0.08 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.35 6.20 7.55 -39.29 -0.30 5.90 16 30 H 0.34 6.03 8.58 -39.29 -0.34 5.69 16 31 H 0.40 5.10 8.29 -40.82 -0.34 4.77 16 32 H 0.05 0.42 8.03 -51.93 -0.42 0.00 16 33 H 0.07 0.89 6.75 -51.93 -0.35 0.54 16 34 H 0.38 2.87 9.12 45.56 0.42 3.29 16 35 H 0.09 1.21 7.03 -51.93 -0.37 0.85 16 36 H 0.09 0.86 7.73 -51.93 -0.40 0.46 16 37 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.65 7.79 -51.93 -0.40 0.25 16 40 H 0.10 1.03 7.74 -51.93 -0.40 0.63 16 LS Contribution 326.68 15.07 4.92 4.92 Total: -1.00 -32.57 326.68 -6.22 -38.79 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: -5.33 Total: 14.82 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: -0.45 Total: -3.58 kcal Atomic # 7 Polarization: -50.34 SS G_CDS: 0.46 Total: -49.88 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: -0.80 Total: -21.48 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.57 -6.22 -38.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691574958.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.961 kcal (2) G-P(sol) polarization free energy of solvation -32.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds