Wall clock time and date at job start Mon Mar 30 2020 04:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86808 * 120.00053 * 2 1 4 4 H 1.48504 * 109.47165 * 240.00344 * 3 2 1 5 5 H 1.48503 * 109.47060 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47276 * 120.00492 * 3 2 1 7 7 C 1.37873 * 120.00209 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00637 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99966 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47328 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47355 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.46919 * 305.00105 * 11 10 9 13 13 N 1.46901 * 109.47116 * 64.99795 * 11 10 9 14 14 C 1.50698 * 109.47516 * 184.99864 * 11 10 9 15 15 O 1.21281 * 119.99781 * 260.00451 * 14 11 10 16 16 N 1.34777 * 119.99834 * 79.99286 * 14 11 10 17 17 C 1.46504 * 119.99866 * 174.96702 * 16 14 11 18 18 C 1.53005 * 110.45028 * 67.27250 * 17 16 14 19 19 O 1.42903 * 109.47161 * 54.78319 * 18 17 16 20 20 C 1.54505 * 110.51763 * 304.67185 * 17 16 14 21 21 C 1.54472 * 104.06232 * 241.35442 * 20 17 16 22 22 O 1.44429 * 104.80513 * 23.97516 * 21 20 17 23 23 C 1.44424 * 105.27289 * 319.48703 * 22 21 20 24 24 H 0.97008 * 120.00173 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.47023 * 59.99161 * 9 7 2 26 26 H 1.08996 * 109.46424 * 299.99860 * 9 7 2 27 27 H 1.09001 * 109.47207 * 59.99389 * 10 9 7 28 28 H 1.09006 * 109.46963 * 299.99779 * 10 9 7 29 29 H 1.00903 * 110.99855 * 296.05470 * 13 11 10 30 30 H 1.00904 * 110.99935 * 59.99892 * 13 11 10 31 31 H 0.96999 * 120.00233 * 354.98363 * 16 14 11 32 32 H 1.09006 * 109.46613 * 174.77790 * 18 17 16 33 33 H 1.08994 * 109.47519 * 294.77730 * 18 17 16 34 34 H 0.96692 * 113.99677 * 180.02562 * 19 18 17 35 35 H 1.09004 * 110.50759 * 359.97438 * 20 17 16 36 36 H 1.08997 * 110.51366 * 122.56518 * 20 17 16 37 37 H 1.09004 * 110.37475 * 142.80398 * 21 20 17 38 38 H 1.08995 * 110.37222 * 265.14108 * 21 20 17 39 39 H 1.09000 * 110.37554 * 281.68452 * 23 22 21 40 40 H 1.09001 * 110.36943 * 159.34266 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6620 -0.0027 11 6 1.4802 -4.9871 -0.0033 12 1 0.7884 -5.0075 0.8388 13 7 0.7280 -5.1177 -1.2583 14 6 2.4548 -6.1299 0.1195 15 8 2.7863 -6.7528 -0.8670 16 7 2.9582 -6.4596 1.3255 17 6 3.8185 -7.6375 1.4630 18 6 5.1446 -7.4193 0.7317 19 8 5.7574 -6.2181 1.2048 20 6 3.1034 -8.8963 0.9232 21 6 3.0027 -9.8268 2.1521 22 8 3.0643 -8.9413 3.2914 23 6 4.0653 -7.9564 2.9542 24 1 -0.4851 0.8401 0.0004 25 1 0.6246 -2.5562 -0.8919 26 1 0.6241 -2.5574 0.8880 27 1 2.8719 -3.6050 0.8872 28 1 2.8718 -3.6035 -0.8927 29 1 0.0233 -4.3996 -1.3339 30 1 1.3476 -5.1015 -2.0546 31 1 2.7508 -5.9172 2.1024 32 1 5.8071 -8.2640 0.9209 33 1 4.9596 -7.3355 -0.3391 34 1 6.6040 -6.0162 0.7835 35 1 2.1096 -8.6423 0.5543 36 1 3.6946 -9.3631 0.1354 37 1 2.0561 -10.3672 2.1423 38 1 3.8392 -10.5253 2.1687 39 1 5.0649 -8.3681 3.0937 40 1 3.9351 -7.0601 3.5606 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691574958.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:26 Heat of formation + Delta-G solvation = -168.420528 kcal Electronic energy + Delta-G solvation = -21902.584155 eV Core-core repulsion = 18522.695251 eV Total energy + Delta-G solvation = -3379.888904 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.71105 -39.91287 -37.68578 -37.00218 -35.38587 -34.83770 -32.33481 -31.69013 -30.28205 -28.08856 -26.60497 -25.71487 -23.76592 -22.73739 -21.51193 -20.61899 -18.90708 -18.45378 -18.09644 -17.65148 -16.99041 -16.69984 -16.53597 -16.09321 -15.93884 -15.75633 -15.41754 -15.06961 -14.77390 -14.51184 -13.94315 -13.93597 -13.50116 -13.37527 -13.19962 -12.92321 -12.73621 -12.62996 -12.52163 -12.18222 -12.04042 -11.81148 -11.68537 -11.32411 -11.07458 -10.82807 -10.56688 -10.52639 -10.08913 -9.64214 -8.21516 -6.32263 1.39652 1.41410 1.49495 1.63474 2.06484 2.40011 2.83714 3.11932 3.22229 3.44608 3.73330 3.75829 3.80037 4.05711 4.12422 4.15684 4.24157 4.27527 4.41612 4.47186 4.64942 4.67319 4.71569 4.77972 4.82234 4.87808 5.03205 5.07867 5.45480 5.50068 5.64369 5.74689 5.79833 6.05682 6.20858 6.46566 6.52541 6.81826 6.82703 7.24426 7.36852 8.89131 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.026223 B = 0.004102 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.515249 B = 6824.297127 C = 7170.992915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.006 3.994 3 Si 0.960 3.040 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.546 4.546 8 H 0.054 0.946 9 C 0.030 3.970 10 C -0.116 4.116 11 C 0.079 3.921 12 H 0.102 0.898 13 N -0.827 5.827 14 C 0.534 3.466 15 O -0.560 6.560 16 N -0.704 5.704 17 C 0.141 3.859 18 C 0.075 3.925 19 O -0.581 6.581 20 C -0.147 4.147 21 C 0.046 3.954 22 O -0.391 6.391 23 C 0.055 3.945 24 H 0.264 0.736 25 H 0.002 0.998 26 H 0.000 1.000 27 H 0.061 0.939 28 H 0.043 0.957 29 H 0.351 0.649 30 H 0.344 0.656 31 H 0.408 0.592 32 H 0.082 0.918 33 H 0.043 0.957 34 H 0.395 0.605 35 H 0.063 0.937 36 H 0.095 0.905 37 H 0.102 0.898 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.358 -18.426 4.593 21.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.193 4.193 3 Si 0.784 3.216 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.584 4.584 8 H 0.072 0.928 9 C -0.007 4.007 10 C -0.156 4.156 11 C -0.036 4.036 12 H 0.120 0.880 13 N -0.359 5.359 14 C 0.321 3.679 15 O -0.438 6.438 16 N -0.356 5.356 17 C 0.054 3.946 18 C -0.004 4.004 19 O -0.389 6.389 20 C -0.186 4.186 21 C -0.030 4.030 22 O -0.310 6.310 23 C -0.022 4.022 24 H 0.073 0.927 25 H 0.021 0.979 26 H 0.018 0.982 27 H 0.080 0.920 28 H 0.062 0.938 29 H 0.166 0.834 30 H 0.157 0.843 31 H 0.244 0.756 32 H 0.100 0.900 33 H 0.061 0.939 34 H 0.245 0.755 35 H 0.081 0.919 36 H 0.113 0.887 37 H 0.120 0.880 38 H 0.105 0.895 39 H 0.114 0.886 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 9.542 -19.499 4.746 22.221 hybrid contribution 0.915 2.389 -0.640 2.637 sum 10.457 -17.110 4.105 20.468 Atomic orbital electron populations 1.70057 1.07530 1.27854 1.51250 1.25872 0.95732 1.03005 0.94664 0.85584 0.78376 0.78540 0.79050 1.19527 1.20744 1.19254 1.21584 0.93318 0.92455 1.51049 0.92759 1.18967 0.94028 0.92122 0.95595 1.22076 0.98606 0.93760 1.01161 1.21403 0.94793 0.91670 0.95756 0.87997 1.58766 1.18291 1.55560 1.03239 1.20514 0.80536 0.83934 0.82950 1.90579 1.60953 1.54464 1.37807 1.45882 1.50251 1.29194 1.10317 1.21890 0.89522 0.85962 0.97246 1.22528 0.92515 0.88008 0.97330 1.86431 1.41243 1.43481 1.67748 1.23170 1.01463 0.94526 0.99439 1.23620 1.04036 0.92466 0.82923 1.89154 1.59774 1.42245 1.39810 1.23677 0.93417 0.93261 0.91863 0.92707 0.97925 0.98210 0.92010 0.93787 0.83382 0.84313 0.75560 0.89995 0.93853 0.75505 0.91852 0.88687 0.88029 0.89452 0.88558 0.88050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.95 13.29 21.44 0.28 -54.66 16 2 C 0.01 0.33 5.46 84.65 0.46 0.79 16 3 Si 0.96 43.70 29.54 68.60 2.03 45.73 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.55 -30.46 9.11 25.60 0.23 -30.22 16 8 H 0.05 2.95 7.74 -2.91 -0.02 2.93 16 9 C 0.03 1.51 4.74 29.85 0.14 1.65 16 10 C -0.12 -4.67 4.78 30.59 0.15 -4.53 16 11 C 0.08 2.74 3.21 44.17 0.14 2.88 16 12 H 0.10 3.40 8.14 -2.39 -0.02 3.38 16 13 N -0.83 -28.98 8.94 -171.80 -1.54 -30.51 16 14 C 0.53 17.34 6.18 87.66 0.54 17.88 16 15 O -0.56 -20.34 13.66 -3.03 -0.04 -20.38 16 16 N -0.70 -18.60 4.91 -418.33 -2.05 -20.65 16 17 C 0.14 3.05 0.77 4.62 0.00 3.06 16 18 C 0.08 1.52 5.56 71.98 0.40 1.92 16 19 O -0.58 -12.30 13.32 -148.98 -1.98 -14.28 16 20 C -0.15 -3.05 5.48 31.61 0.17 -2.87 16 21 C 0.05 0.75 7.63 72.48 0.55 1.31 16 22 O -0.39 -8.25 11.65 -148.98 -1.74 -9.99 16 23 C 0.05 1.00 6.75 72.49 0.49 1.49 16 24 H 0.26 14.80 8.31 -92.70 -0.77 14.03 16 25 H 0.00 0.13 6.87 -2.39 -0.02 0.11 16 26 H 0.00 -0.03 8.14 -2.39 -0.02 -0.04 16 27 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 28 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16 29 H 0.35 12.57 7.55 -89.69 -0.68 11.89 16 30 H 0.34 12.16 8.58 -89.69 -0.77 11.39 16 31 H 0.41 9.96 8.29 -92.71 -0.77 9.19 16 32 H 0.08 1.12 8.03 -2.38 -0.02 1.10 16 33 H 0.04 1.10 6.75 -2.39 -0.02 1.08 16 34 H 0.40 5.24 9.12 -74.06 -0.68 4.56 16 35 H 0.06 1.67 7.03 -2.39 -0.02 1.65 16 36 H 0.09 1.76 7.73 -2.39 -0.02 1.74 16 37 H 0.10 1.50 8.14 -2.38 -0.02 1.48 16 38 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.10 1.36 7.79 -2.39 -0.02 1.34 16 40 H 0.10 1.85 7.74 -2.39 -0.02 1.83 16 Total: -1.00 -69.07 326.68 -3.56 -72.63 By element: Atomic # 1 Polarization: 40.58 SS G_CDS: -1.80 Total: 38.78 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: 3.29 Total: -6.65 kcal Atomic # 7 Polarization: -102.52 SS G_CDS: -3.30 Total: -105.83 kcal Atomic # 8 Polarization: -40.89 SS G_CDS: -3.76 Total: -44.65 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -69.07 -3.56 -72.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691574958.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.790 kcal (2) G-P(sol) polarization free energy of solvation -69.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds