Wall clock time and date at job start Mon Mar 30 2020 04:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 119.99925 * 2 1 4 4 H 1.48497 * 109.46964 * 269.99748 * 3 2 1 5 5 H 1.48502 * 109.47035 * 29.99580 * 3 2 1 6 6 H 1.48499 * 109.47257 * 149.99655 * 3 2 1 7 7 C 1.37879 * 120.00465 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99452 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00258 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47127 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47127 * 180.02562 * 11 10 9 13 13 H 1.09002 * 109.47196 * 304.99671 * 12 11 10 14 14 N 1.46898 * 109.47386 * 64.99548 * 12 11 10 15 15 C 1.50701 * 109.47348 * 184.99767 * 12 11 10 16 16 O 1.21283 * 119.99918 * 260.00379 * 15 12 11 17 17 N 1.34779 * 119.99918 * 79.99776 * 15 12 11 18 18 C 1.46492 * 119.99922 * 180.02562 * 17 15 12 19 19 H 1.08998 * 110.75939 * 34.29485 * 18 17 15 20 20 C 1.54385 * 110.84422 * 270.82262 * 18 17 15 21 21 O 1.43244 * 107.59119 * 220.45174 * 20 18 17 22 22 C 1.43644 * 109.96729 * 358.29260 * 21 20 18 23 23 C 1.55208 * 105.26459 * 24.28021 * 22 21 20 24 24 H 1.08996 * 111.05013 * 81.64152 * 23 22 21 25 25 O 1.42901 * 111.30477 * 205.88486 * 23 22 21 26 26 H 0.96999 * 120.00061 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.47197 * 60.00848 * 9 7 2 28 28 H 1.09001 * 109.47328 * 300.00375 * 9 7 2 29 29 H 1.09001 * 109.47502 * 60.00512 * 10 9 7 30 30 H 1.09001 * 109.47289 * 300.00308 * 10 9 7 31 31 H 1.09001 * 109.47002 * 299.99574 * 11 10 9 32 32 H 1.08993 * 109.46955 * 60.00011 * 11 10 9 33 33 H 1.00898 * 111.00578 * 296.04915 * 14 12 11 34 34 H 1.00908 * 110.99685 * 60.00149 * 14 12 11 35 35 H 0.97007 * 119.99767 * 359.97438 * 17 15 12 36 36 H 1.08996 * 109.83077 * 339.96972 * 20 18 17 37 37 H 1.09007 * 109.82803 * 100.85012 * 20 18 17 38 38 H 1.09002 * 110.30807 * 143.34526 * 22 21 20 39 39 H 1.09005 * 110.30716 * 265.40941 * 22 21 20 40 40 H 0.96698 * 113.99733 * 291.51748 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6364 0.0010 11 6 5.5517 -2.6364 0.0022 12 6 6.0617 -4.0788 0.0015 13 1 5.6265 -4.6186 0.8425 14 7 5.6741 -4.7347 -1.2545 15 6 7.5635 -4.0808 0.1264 16 8 8.2538 -4.2329 -0.8591 17 7 8.1395 -3.9133 1.3334 18 6 9.5994 -3.9146 1.4548 19 1 10.0607 -3.4679 0.5741 20 6 10.1300 -5.3457 1.6868 21 8 11.1782 -5.2663 2.6600 22 6 11.3904 -3.8979 3.0417 23 6 10.0472 -3.1783 2.7468 24 1 9.3335 -3.3348 3.5556 25 8 10.2476 -1.7847 2.5023 26 1 -0.4850 0.8400 -0.0004 27 1 3.8746 -0.6801 0.8912 28 1 3.8753 -0.6803 -0.8888 29 1 3.6588 -3.1501 -0.8893 30 1 3.6579 -3.1505 0.8907 31 1 5.9157 -2.1223 -0.8873 32 1 5.9142 -2.1229 0.8927 33 1 4.6704 -4.8038 -1.3317 34 1 6.0655 -4.2527 -2.0499 35 1 7.5873 -3.7912 2.1216 36 1 9.3272 -5.9820 2.0591 37 1 10.5204 -5.7512 0.7533 38 1 11.6301 -3.8341 4.1032 39 1 12.1914 -3.4590 2.4467 40 1 10.5279 -1.2851 3.2812 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691581833.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:07 Heat of formation + Delta-G solvation = -142.206059 kcal Electronic energy + Delta-G solvation = -21092.980742 eV Core-core repulsion = 17714.228583 eV Total energy + Delta-G solvation = -3378.752160 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.65184 -39.34039 -36.70670 -36.19678 -34.74512 -33.38558 -31.50501 -30.31489 -29.06797 -28.09110 -25.56391 -23.29569 -22.47753 -21.54931 -20.32910 -20.23183 -18.27183 -17.55843 -17.21941 -16.76930 -16.28020 -15.68572 -15.25515 -15.01507 -14.88687 -14.45968 -14.22453 -13.97161 -13.85055 -13.36232 -13.30900 -12.96493 -12.64461 -12.58411 -12.17041 -12.05970 -11.46821 -11.27303 -11.07905 -10.82012 -10.76829 -10.14056 -9.99195 -9.98448 -9.82713 -9.59580 -9.35905 -9.26199 -8.60963 -8.57577 -6.09676 -4.08307 2.53957 2.74628 3.14292 3.26632 3.34290 3.37256 3.81441 3.92486 4.28804 4.40240 4.41561 4.62478 4.71386 4.76067 4.81328 5.09328 5.12532 5.17745 5.23812 5.24464 5.43709 5.51515 5.61762 5.78685 6.08326 6.12213 6.38751 6.42713 6.50914 6.77488 7.04003 7.05253 7.19843 7.30310 7.33080 7.51984 7.73177 8.09304 8.47409 8.94714 9.52796 11.03689 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.024015 B = 0.003595 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.656961 B = 7786.243044 C = 8583.997240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.523 4.523 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.101 4.101 11 C -0.150 4.150 12 C 0.077 3.923 13 H 0.102 0.898 14 N -0.830 5.830 15 C 0.528 3.472 16 O -0.529 6.529 17 N -0.722 5.722 18 C 0.122 3.878 19 H 0.113 0.887 20 C 0.042 3.958 21 O -0.375 6.375 22 C 0.023 3.977 23 C 0.062 3.938 24 H 0.084 0.916 25 O -0.546 6.546 26 H 0.263 0.737 27 H 0.015 0.985 28 H 0.010 0.990 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.354 0.646 34 H 0.349 0.651 35 H 0.404 0.596 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.074 0.926 40 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.279 -7.439 7.775 23.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.561 4.561 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.139 4.139 11 C -0.190 4.190 12 C -0.038 4.038 13 H 0.120 0.880 14 N -0.363 5.363 15 C 0.314 3.686 16 O -0.403 6.403 17 N -0.376 5.376 18 C 0.015 3.985 19 H 0.131 0.869 20 C -0.036 4.036 21 O -0.293 6.293 22 C -0.055 4.055 23 C 0.001 3.999 24 H 0.101 0.899 25 O -0.352 6.352 26 H 0.073 0.927 27 H 0.033 0.967 28 H 0.028 0.972 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.169 0.831 34 H 0.163 0.837 35 H 0.239 0.761 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.111 0.889 39 H 0.092 0.908 40 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 21.944 -8.431 6.783 24.467 hybrid contribution -0.368 2.314 0.716 2.450 sum 21.576 -6.117 7.499 23.647 Atomic orbital electron populations 1.69913 1.06303 1.26942 1.51012 1.25042 0.94733 0.99206 0.94515 0.86775 0.80282 0.83632 0.78555 1.20286 1.21341 1.19110 1.21138 0.89470 0.94475 1.50994 0.91017 1.19557 0.97173 0.92079 0.96246 1.21482 0.90769 1.00376 1.01234 1.22455 0.99161 0.94536 1.02869 1.21408 0.90455 0.95900 0.96023 0.88013 1.58678 1.16999 1.57423 1.03152 1.20821 0.90845 0.74527 0.82392 1.90674 1.64877 1.47802 1.36983 1.45831 1.05805 1.75456 1.10493 1.22305 0.82254 0.94720 0.99172 0.86880 1.23580 0.90605 0.96266 0.93142 1.88466 1.55752 1.24878 1.60228 1.24056 0.97202 0.82726 1.01481 1.23734 0.96528 0.82622 0.96986 0.89870 1.86593 1.90899 1.18079 1.39592 0.92691 0.96657 0.97165 0.92699 0.92387 0.91690 0.91509 0.83086 0.83673 0.76077 0.90158 0.89912 0.88939 0.90822 0.76679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.61 13.96 55.43 0.77 -26.84 16 2 C 0.07 1.91 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 21.57 27.47 -169.99 -4.67 16.90 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 7 C -0.52 -14.61 9.66 -34.44 -0.33 -14.94 16 8 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 9 C -0.01 -0.30 4.04 -27.89 -0.11 -0.42 16 10 C -0.10 -1.81 4.92 -26.73 -0.13 -1.94 16 11 C -0.15 -2.20 4.84 -26.73 -0.13 -2.33 16 12 C 0.08 0.99 3.21 -68.87 -0.22 0.77 16 13 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 14 N -0.83 -11.04 8.94 -5.66 -0.05 -11.09 16 15 C 0.53 7.06 7.08 -10.98 -0.08 6.99 16 16 O -0.53 -8.86 15.94 5.56 0.09 -8.77 16 17 N -0.72 -7.39 5.12 -51.93 -0.27 -7.66 16 18 C 0.12 1.21 3.06 -65.99 -0.20 1.01 16 19 H 0.11 1.39 7.63 -51.93 -0.40 1.00 16 20 C 0.04 0.40 7.56 37.88 0.29 0.69 16 21 O -0.37 -3.67 11.36 -35.23 -0.40 -4.07 16 22 C 0.02 0.16 7.53 38.33 0.29 0.45 16 23 C 0.06 0.45 4.13 -24.34 -0.10 0.35 16 24 H 0.08 0.48 7.99 -51.93 -0.42 0.06 16 25 O -0.55 -4.35 13.49 -35.23 -0.48 -4.82 16 26 H 0.26 7.53 8.31 -40.82 -0.34 7.20 16 27 H 0.02 0.35 7.20 -51.93 -0.37 -0.02 16 28 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 29 H 0.05 0.97 6.87 -51.93 -0.36 0.61 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.35 4.43 7.55 -39.29 -0.30 4.14 16 34 H 0.35 4.82 8.58 -39.29 -0.34 4.49 16 35 H 0.40 3.19 8.53 -40.82 -0.35 2.84 16 36 H 0.08 0.73 8.02 -51.93 -0.42 0.31 16 37 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.39 1.23 9.12 45.56 0.42 1.65 16 LS Contribution 330.89 15.07 4.99 4.99 Total: -1.00 -34.62 330.89 -6.31 -40.92 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -5.46 Total: 8.00 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: -0.83 Total: -7.56 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: 0.46 Total: -45.58 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: -0.79 Total: -17.67 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.62 -6.31 -40.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691581833.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.283 kcal (2) G-P(sol) polarization free energy of solvation -34.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds