Wall clock time and date at job start Mon Mar 30 2020 04:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 119.99925 * 2 1 4 4 H 1.48497 * 109.46964 * 269.99748 * 3 2 1 5 5 H 1.48502 * 109.47035 * 29.99580 * 3 2 1 6 6 H 1.48499 * 109.47257 * 149.99655 * 3 2 1 7 7 C 1.37879 * 120.00465 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99452 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00258 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47127 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47127 * 180.02562 * 11 10 9 13 13 H 1.09002 * 109.47196 * 304.99671 * 12 11 10 14 14 N 1.46898 * 109.47386 * 64.99548 * 12 11 10 15 15 C 1.50701 * 109.47348 * 184.99767 * 12 11 10 16 16 O 1.21283 * 119.99918 * 260.00379 * 15 12 11 17 17 N 1.34779 * 119.99918 * 79.99776 * 15 12 11 18 18 C 1.46492 * 119.99922 * 180.02562 * 17 15 12 19 19 H 1.08998 * 110.75939 * 34.29485 * 18 17 15 20 20 C 1.54385 * 110.84422 * 270.82262 * 18 17 15 21 21 O 1.43244 * 107.59119 * 220.45174 * 20 18 17 22 22 C 1.43644 * 109.96729 * 358.29260 * 21 20 18 23 23 C 1.55208 * 105.26459 * 24.28021 * 22 21 20 24 24 H 1.08996 * 111.05013 * 81.64152 * 23 22 21 25 25 O 1.42901 * 111.30477 * 205.88486 * 23 22 21 26 26 H 0.96999 * 120.00061 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.47197 * 60.00848 * 9 7 2 28 28 H 1.09001 * 109.47328 * 300.00375 * 9 7 2 29 29 H 1.09001 * 109.47502 * 60.00512 * 10 9 7 30 30 H 1.09001 * 109.47289 * 300.00308 * 10 9 7 31 31 H 1.09001 * 109.47002 * 299.99574 * 11 10 9 32 32 H 1.08993 * 109.46955 * 60.00011 * 11 10 9 33 33 H 1.00898 * 111.00578 * 296.04915 * 14 12 11 34 34 H 1.00908 * 110.99685 * 60.00149 * 14 12 11 35 35 H 0.97007 * 119.99767 * 359.97438 * 17 15 12 36 36 H 1.08996 * 109.83077 * 339.96972 * 20 18 17 37 37 H 1.09007 * 109.82803 * 100.85012 * 20 18 17 38 38 H 1.09002 * 110.30807 * 143.34526 * 22 21 20 39 39 H 1.09005 * 110.30716 * 265.40941 * 22 21 20 40 40 H 0.96698 * 113.99733 * 291.51748 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6364 0.0010 11 6 5.5517 -2.6364 0.0022 12 6 6.0617 -4.0788 0.0015 13 1 5.6265 -4.6186 0.8425 14 7 5.6741 -4.7347 -1.2545 15 6 7.5635 -4.0808 0.1264 16 8 8.2538 -4.2329 -0.8591 17 7 8.1395 -3.9133 1.3334 18 6 9.5994 -3.9146 1.4548 19 1 10.0607 -3.4679 0.5741 20 6 10.1300 -5.3457 1.6868 21 8 11.1782 -5.2663 2.6600 22 6 11.3904 -3.8979 3.0417 23 6 10.0472 -3.1783 2.7468 24 1 9.3335 -3.3348 3.5556 25 8 10.2476 -1.7847 2.5023 26 1 -0.4850 0.8400 -0.0004 27 1 3.8746 -0.6801 0.8912 28 1 3.8753 -0.6803 -0.8888 29 1 3.6588 -3.1501 -0.8893 30 1 3.6579 -3.1505 0.8907 31 1 5.9157 -2.1223 -0.8873 32 1 5.9142 -2.1229 0.8927 33 1 4.6704 -4.8038 -1.3317 34 1 6.0655 -4.2527 -2.0499 35 1 7.5873 -3.7912 2.1216 36 1 9.3272 -5.9820 2.0591 37 1 10.5204 -5.7512 0.7533 38 1 11.6301 -3.8341 4.1032 39 1 12.1914 -3.4590 2.4467 40 1 10.5279 -1.2851 3.2812 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691581833.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:07 Heat of formation + Delta-G solvation = -173.604671 kcal Electronic energy + Delta-G solvation = -21094.342288 eV Core-core repulsion = 17714.228583 eV Total energy + Delta-G solvation = -3380.113706 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.49058 -40.22041 -37.46718 -37.29615 -35.66530 -35.22681 -33.26530 -31.09992 -29.82279 -29.47744 -26.93820 -24.36691 -23.52801 -22.42563 -21.81026 -21.29701 -18.96942 -18.89413 -18.45885 -17.98892 -17.00373 -16.48664 -16.41768 -16.18596 -16.10213 -15.84128 -15.42835 -14.91771 -14.84243 -14.58085 -14.27347 -14.01590 -13.86584 -13.79642 -13.61638 -13.12489 -12.98868 -12.60124 -12.43404 -11.89411 -11.80214 -11.73169 -11.46147 -11.37367 -11.31040 -10.84174 -10.77342 -10.65720 -10.24397 -9.68466 -8.30135 -6.33963 1.35200 1.35904 1.47699 1.50232 1.88447 2.34814 2.56217 3.05573 3.16436 3.31038 3.62518 3.67743 3.73796 3.84381 3.97156 4.07353 4.09881 4.13312 4.36980 4.49204 4.63310 4.66142 4.69141 4.72708 4.80145 4.95448 5.05377 5.11331 5.29202 5.51165 5.58468 5.66551 5.77014 6.03933 6.27823 6.42044 6.47449 6.74976 6.75385 7.13495 7.31111 8.86540 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.024015 B = 0.003595 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.656961 B = 7786.243044 C = 8583.997240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.003 3.997 3 Si 0.949 3.051 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.246 1.246 7 C -0.532 4.532 8 H 0.035 0.965 9 C -0.013 4.013 10 C -0.093 4.093 11 C -0.137 4.137 12 C 0.084 3.916 13 H 0.125 0.875 14 N -0.834 5.834 15 C 0.526 3.474 16 O -0.568 6.568 17 N -0.705 5.705 18 C 0.115 3.885 19 H 0.085 0.915 20 C 0.047 3.953 21 O -0.390 6.390 22 C 0.021 3.979 23 C 0.073 3.927 24 H 0.108 0.892 25 O -0.567 6.567 26 H 0.266 0.734 27 H 0.021 0.979 28 H 0.011 0.989 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.080 0.920 33 H 0.357 0.643 34 H 0.346 0.654 35 H 0.419 0.581 36 H 0.088 0.912 37 H 0.068 0.932 38 H 0.121 0.879 39 H 0.070 0.930 40 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.051 -6.802 9.401 25.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.194 4.194 3 Si 0.772 3.228 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.169 1.169 7 C -0.570 4.570 8 H 0.054 0.946 9 C -0.051 4.051 10 C -0.130 4.130 11 C -0.177 4.177 12 C -0.031 4.031 13 H 0.142 0.858 14 N -0.367 5.367 15 C 0.313 3.687 16 O -0.446 6.446 17 N -0.360 5.360 18 C 0.009 3.991 19 H 0.103 0.897 20 C -0.031 4.031 21 O -0.309 6.309 22 C -0.055 4.055 23 C 0.013 3.987 24 H 0.126 0.874 25 O -0.376 6.376 26 H 0.075 0.925 27 H 0.040 0.960 28 H 0.029 0.971 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.098 0.902 33 H 0.173 0.827 34 H 0.159 0.841 35 H 0.256 0.744 36 H 0.106 0.894 37 H 0.087 0.913 38 H 0.139 0.861 39 H 0.088 0.912 40 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 23.734 -7.797 8.464 26.377 hybrid contribution -0.941 2.061 0.228 2.277 sum 22.793 -5.736 8.692 25.060 Atomic orbital electron populations 1.70067 1.08282 1.28109 1.52803 1.26021 0.95580 1.03503 0.94285 0.85680 0.79564 0.78500 0.79010 1.19640 1.20971 1.16912 1.21540 0.92244 0.93118 1.50051 0.94642 1.19538 0.93755 0.95478 0.96304 1.21325 0.93071 0.97138 1.01493 1.22270 0.96433 0.95939 1.03040 1.21392 0.90271 0.94863 0.96571 0.85760 1.58690 1.17233 1.57434 1.03328 1.20900 0.90877 0.74192 0.82713 1.90664 1.65603 1.49829 1.38479 1.45685 1.06239 1.73921 1.10108 1.22311 0.81689 0.95446 0.99667 0.89689 1.23452 0.90788 0.96051 0.92767 1.88449 1.55774 1.26622 1.60057 1.24231 0.96961 0.81289 1.03058 1.23679 0.97024 0.82318 0.95718 0.87432 1.86545 1.91111 1.18406 1.41539 0.92547 0.96048 0.97106 0.92900 0.91875 0.92710 0.90186 0.82723 0.84091 0.74361 0.89429 0.91343 0.86123 0.91162 0.74269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.26 13.96 21.45 0.30 -58.97 16 2 C 0.00 0.16 5.47 84.66 0.46 0.62 16 3 Si 0.95 43.80 27.47 68.60 1.88 45.68 16 4 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 5 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 6 H -0.25 -10.42 6.54 99.48 0.65 -9.77 16 7 C -0.53 -29.89 9.66 25.60 0.25 -29.64 16 8 H 0.04 2.18 7.99 -2.91 -0.02 2.16 16 9 C -0.01 -0.59 4.04 29.85 0.12 -0.47 16 10 C -0.09 -3.16 4.92 30.60 0.15 -3.01 16 11 C -0.14 -3.70 4.84 30.60 0.15 -3.55 16 12 C 0.08 1.98 3.21 44.17 0.14 2.12 16 13 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 14 N -0.83 -21.24 8.94 -171.81 -1.54 -22.77 16 15 C 0.53 13.32 7.08 87.66 0.62 13.94 16 16 O -0.57 -18.88 15.94 -3.04 -0.05 -18.92 16 17 N -0.71 -12.97 5.12 -436.58 -2.24 -15.21 16 18 C 0.12 2.14 3.06 46.25 0.14 2.28 16 19 H 0.08 2.10 7.63 -2.39 -0.02 2.08 16 20 C 0.05 0.86 7.56 72.45 0.55 1.41 16 21 O -0.39 -7.01 11.36 -148.98 -1.69 -8.70 16 22 C 0.02 0.25 7.53 72.74 0.55 0.80 16 23 C 0.07 0.87 4.13 32.14 0.13 1.01 16 24 H 0.11 0.80 7.99 -2.39 -0.02 0.78 16 25 O -0.57 -7.59 13.49 -148.98 -2.01 -9.60 16 26 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 27 H 0.02 0.92 7.20 -2.39 -0.02 0.91 16 28 H 0.01 0.47 7.57 -2.39 -0.02 0.46 16 29 H 0.05 1.81 6.87 -2.39 -0.02 1.80 16 30 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.36 8.56 7.55 -89.70 -0.68 7.88 16 34 H 0.35 9.35 8.58 -89.69 -0.77 8.58 16 35 H 0.42 5.24 8.53 -92.70 -0.79 4.45 16 36 H 0.09 1.45 8.02 -2.39 -0.02 1.43 16 37 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 38 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 40 H 0.41 1.37 9.12 -74.06 -0.68 0.70 16 Total: -1.00 -75.60 330.89 -3.96 -79.57 By element: Atomic # 1 Polarization: 25.29 SS G_CDS: -1.89 Total: 23.41 kcal Atomic # 6 Polarization: -17.75 SS G_CDS: 3.26 Total: -14.49 kcal Atomic # 7 Polarization: -93.47 SS G_CDS: -3.47 Total: -96.94 kcal Atomic # 8 Polarization: -33.47 SS G_CDS: -3.75 Total: -37.22 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 1.88 Total: 45.68 kcal Total: -75.60 -3.96 -79.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691581833.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.037 kcal (2) G-P(sol) polarization free energy of solvation -75.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds