Wall clock time and date at job start Mon Mar 30 2020 04:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46929 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.46929 * 179.97438 * 11 10 9 13 13 H 1.09004 * 109.46916 * 55.00264 * 12 11 10 14 14 N 1.46899 * 109.47625 * 295.00033 * 12 11 10 15 15 C 1.50702 * 109.47274 * 174.99843 * 12 11 10 16 16 O 1.21281 * 119.99727 * 100.00047 * 15 12 11 17 17 N 1.34775 * 120.00121 * 280.00153 * 15 12 11 18 18 C 1.46499 * 119.99853 * 179.97438 * 17 15 12 19 19 H 1.08999 * 110.43908 * 36.09212 * 18 17 15 20 20 C 1.54108 * 110.48888 * 273.54513 * 18 17 15 21 21 O 1.43738 * 107.29612 * 239.29342 * 20 18 17 22 22 C 1.44384 * 106.97277 * 26.51651 * 21 20 18 23 23 C 1.54811 * 110.48612 * 158.78178 * 18 17 15 24 24 H 1.09005 * 110.90607 * 215.99322 * 23 18 17 25 25 O 1.42898 * 110.90981 * 339.59939 * 23 18 17 26 26 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 28 28 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 29 29 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 30 30 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 31 31 H 1.09000 * 109.47441 * 299.99910 * 11 10 9 32 32 H 1.09002 * 109.47087 * 60.00464 * 11 10 9 33 33 H 1.00902 * 111.00011 * 300.00604 * 14 12 11 34 34 H 1.00902 * 110.99685 * 63.94953 * 14 12 11 35 35 H 0.96992 * 120.00097 * 0.02562 * 17 15 12 36 36 H 1.08999 * 109.87477 * 358.72530 * 20 18 17 37 37 H 1.09004 * 109.87445 * 119.71735 * 20 18 17 38 38 H 1.09000 * 110.61866 * 78.44180 * 22 21 20 39 39 H 1.09005 * 110.61476 * 201.27694 * 22 21 20 40 40 H 0.96696 * 114.00058 * 180.02562 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4803 -4.9870 0.0012 12 6 2.4746 -6.1499 0.0005 13 1 3.1593 -6.0430 0.8419 14 7 3.2368 -6.1419 -1.2552 15 6 1.7253 -7.4516 0.1250 16 8 1.5124 -8.1253 -0.8607 17 7 1.2919 -7.8669 1.3317 18 6 0.5631 -9.1320 1.4526 19 1 0.9626 -9.8694 0.7565 20 6 -0.9417 -8.9136 1.2022 21 8 -1.6376 -9.3328 2.3880 22 6 -0.7192 -9.1804 3.4916 23 6 0.6330 -9.6608 2.9059 24 1 0.6990 -10.7487 2.9212 25 8 1.7303 -9.0752 3.6095 26 1 -0.4850 -0.8401 -0.0004 27 1 0.6241 -2.5566 0.8903 28 1 0.6247 -2.5571 -0.8897 29 1 2.8720 -3.6043 -0.8894 30 1 2.8720 -3.6043 0.8906 31 1 0.8540 -5.0446 0.8914 32 1 0.8534 -5.0451 -0.8886 33 1 2.6240 -6.2397 -2.0508 34 1 3.7985 -5.3072 -1.3319 35 1 1.4619 -7.3279 2.1200 36 1 -1.1364 -7.8581 1.0117 37 1 -1.2658 -9.5098 0.3492 38 1 -0.6559 -8.1359 3.7969 39 1 -1.0208 -9.8068 4.3312 40 1 1.8161 -9.3757 4.5246 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691594286.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:09 Heat of formation + Delta-G solvation = -178.078098 kcal Electronic energy + Delta-G solvation = -21289.466006 eV Core-core repulsion = 17909.158318 eV Total energy + Delta-G solvation = -3380.307688 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.57150 -40.19766 -37.57950 -37.28077 -35.60361 -35.44058 -32.93255 -31.11665 -29.66119 -29.09327 -26.68258 -24.61885 -23.95863 -22.36391 -21.93067 -21.36649 -19.07496 -18.83425 -18.51410 -17.42866 -17.27607 -16.65593 -16.27240 -16.17204 -16.00159 -15.71803 -15.64660 -15.13606 -15.00425 -14.67052 -14.25372 -13.98520 -13.87440 -13.44053 -13.26243 -12.93342 -12.79898 -12.66017 -12.46544 -12.13786 -11.98863 -11.75021 -11.63690 -11.32985 -10.98936 -10.75027 -10.66846 -10.55789 -10.22441 -9.75344 -8.70076 -6.41260 1.47951 1.52662 1.60923 1.80020 1.91810 2.56522 2.65111 3.14811 3.18724 3.34276 3.55274 3.61657 3.68485 3.87571 3.93259 3.97814 4.09107 4.19484 4.27936 4.42512 4.60848 4.61737 4.65661 4.66232 4.78944 4.83661 4.96999 5.02596 5.26682 5.39068 5.48288 5.65024 5.97184 5.98360 6.17329 6.40952 6.43959 6.55794 6.76985 7.13569 7.41679 8.70402 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.023155 B = 0.003526 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.956582 B = 7938.717013 C = 8424.891117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.042 4.042 3 Si 1.118 2.882 4 H -0.286 1.286 5 H -0.266 1.266 6 H -0.269 1.269 7 C -0.619 4.619 8 H 0.055 0.945 9 C 0.007 3.993 10 C -0.088 4.088 11 C -0.134 4.134 12 C 0.086 3.914 13 H 0.120 0.880 14 N -0.831 5.831 15 C 0.524 3.476 16 O -0.569 6.569 17 N -0.700 5.700 18 C 0.113 3.887 19 H 0.100 0.900 20 C 0.037 3.963 21 O -0.385 6.385 22 C 0.011 3.989 23 C 0.080 3.920 24 H 0.109 0.891 25 O -0.562 6.562 26 H 0.254 0.746 27 H -0.012 1.012 28 H -0.018 1.018 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.049 0.951 33 H 0.346 0.654 34 H 0.357 0.643 35 H 0.416 0.584 36 H 0.053 0.947 37 H 0.098 0.902 38 H 0.067 0.933 39 H 0.127 0.873 40 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.213 -20.914 9.267 23.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.238 4.238 3 Si 0.939 3.061 4 H -0.211 1.211 5 H -0.191 1.191 6 H -0.194 1.194 7 C -0.657 4.657 8 H 0.073 0.927 9 C -0.030 4.030 10 C -0.126 4.126 11 C -0.174 4.174 12 C -0.029 4.029 13 H 0.137 0.863 14 N -0.363 5.363 15 C 0.311 3.689 16 O -0.447 6.447 17 N -0.353 5.353 18 C 0.007 3.993 19 H 0.118 0.882 20 C -0.041 4.041 21 O -0.304 6.304 22 C -0.066 4.066 23 C 0.020 3.980 24 H 0.127 0.873 25 O -0.372 6.372 26 H 0.063 0.937 27 H 0.007 0.993 28 H 0.000 1.000 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.159 0.841 34 H 0.172 0.828 35 H 0.254 0.746 36 H 0.071 0.929 37 H 0.116 0.884 38 H 0.085 0.915 39 H 0.145 0.855 40 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 3.115 -20.226 8.309 22.087 hybrid contribution -0.735 -0.637 0.382 1.045 sum 2.380 -20.863 8.692 22.726 Atomic orbital electron populations 1.70931 1.08087 1.29747 1.48955 1.27480 0.96580 1.07062 0.92726 0.82932 0.74112 0.70946 0.78148 1.21117 1.19106 1.19383 1.22535 0.94880 0.93390 1.54900 0.92688 1.19189 0.95192 0.94798 0.93860 1.21319 0.97695 0.92179 1.01396 1.22236 0.98388 0.94535 1.02273 1.21343 0.95078 0.90053 0.96471 0.86264 1.58699 1.28098 1.46314 1.03173 1.20802 0.78039 0.87149 0.82925 1.90643 1.58130 1.57665 1.38264 1.45649 1.56946 1.23048 1.09696 1.22379 0.91796 0.87144 0.98013 0.88238 1.23649 0.90621 1.00438 0.89372 1.88918 1.37692 1.87088 1.16742 1.24532 0.88513 1.02605 0.90936 1.23507 0.86489 0.98593 0.89460 0.87305 1.86416 1.48698 1.70767 1.31293 0.93710 0.99326 0.99995 0.92489 0.91843 0.91219 0.93179 0.84083 0.82775 0.74632 0.92912 0.88406 0.91453 0.85526 0.74036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.84 13.65 21.45 0.29 -58.55 16 2 C -0.04 -2.41 5.46 84.65 0.46 -1.95 16 3 Si 1.12 49.89 29.90 68.60 2.05 51.94 16 4 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 5 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 6 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 7 C -0.62 -35.05 9.11 25.60 0.23 -34.82 16 8 H 0.05 2.98 7.74 -2.91 -0.02 2.96 16 9 C 0.01 0.34 4.28 29.85 0.13 0.47 16 10 C -0.09 -3.35 4.92 30.59 0.15 -3.20 16 11 C -0.13 -4.24 4.84 30.59 0.15 -4.09 16 12 C 0.09 2.31 3.21 44.17 0.14 2.45 16 13 H 0.12 2.80 8.14 -2.38 -0.02 2.78 16 14 N -0.83 -22.87 8.94 -171.80 -1.54 -24.40 16 15 C 0.52 14.77 7.07 87.66 0.62 15.39 16 16 O -0.57 -19.68 15.96 -3.03 -0.05 -19.73 16 17 N -0.70 -15.43 4.71 -437.84 -2.06 -17.49 16 18 C 0.11 2.19 3.31 45.98 0.15 2.35 16 19 H 0.10 2.14 7.66 -2.39 -0.02 2.12 16 20 C 0.04 0.79 7.50 72.36 0.54 1.33 16 21 O -0.39 -7.86 11.52 -148.98 -1.72 -9.58 16 22 C 0.01 0.14 7.45 72.67 0.54 0.68 16 23 C 0.08 0.96 4.43 31.90 0.14 1.10 16 24 H 0.11 0.89 8.14 -2.38 -0.02 0.87 16 25 O -0.56 -6.06 12.06 -148.98 -1.80 -7.86 16 26 H 0.25 16.12 7.22 -92.71 -0.67 15.45 16 27 H -0.01 -0.63 8.01 -2.39 -0.02 -0.65 16 28 H -0.02 -1.02 8.01 -2.38 -0.02 -1.03 16 29 H 0.06 2.09 6.87 -2.39 -0.02 2.07 16 30 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.35 10.03 8.58 -89.69 -0.77 9.26 16 34 H 0.36 9.09 7.55 -89.69 -0.68 8.41 16 35 H 0.42 8.04 7.73 -92.71 -0.72 7.32 16 36 H 0.05 1.29 7.93 -2.39 -0.02 1.28 16 37 H 0.10 2.01 8.14 -2.38 -0.02 1.99 16 38 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.13 0.91 8.14 -2.38 -0.02 0.89 16 40 H 0.41 0.50 9.12 -74.06 -0.68 -0.17 16 Total: -1.00 -74.90 331.20 -3.21 -78.11 By element: Atomic # 1 Polarization: 29.51 SS G_CDS: -1.66 Total: 27.85 kcal Atomic # 6 Polarization: -23.55 SS G_CDS: 3.26 Total: -20.29 kcal Atomic # 7 Polarization: -97.14 SS G_CDS: -3.30 Total: -100.44 kcal Atomic # 8 Polarization: -33.61 SS G_CDS: -3.56 Total: -37.17 kcal Atomic # 14 Polarization: 49.89 SS G_CDS: 2.05 Total: 51.94 kcal Total: -74.90 -3.21 -78.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691594286.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.971 kcal (2) G-P(sol) polarization free energy of solvation -74.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds