Wall clock time and date at job start Mon Mar 30 2020 04:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 120.00051 * 2 1 4 4 H 1.48504 * 109.46882 * 269.99401 * 3 2 1 5 5 H 1.48495 * 109.47240 * 29.99763 * 3 2 1 6 6 H 1.48497 * 109.46983 * 149.99639 * 3 2 1 7 7 C 1.37879 * 119.99822 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00113 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00173 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47423 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47230 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47244 * 179.97438 * 11 10 9 13 13 H 1.09004 * 109.46838 * 55.00342 * 12 11 10 14 14 N 1.46894 * 109.47192 * 295.00265 * 12 11 10 15 15 C 1.50696 * 109.47188 * 174.99830 * 12 11 10 16 16 O 1.21284 * 120.00109 * 100.00273 * 15 12 11 17 17 N 1.34777 * 120.00137 * 280.00058 * 15 12 11 18 18 C 1.46506 * 119.99873 * 179.97438 * 17 15 12 19 19 H 1.08994 * 110.45766 * 325.70580 * 18 17 15 20 20 C 1.54483 * 110.50877 * 88.31044 * 18 17 15 21 21 O 1.44786 * 104.62929 * 94.70150 * 20 18 17 22 22 C 1.44426 * 105.29347 * 40.53398 * 21 20 18 23 23 C 1.54478 * 104.80698 * 319.45246 * 22 21 20 24 24 H 1.08996 * 110.51353 * 142.62198 * 23 22 21 25 25 O 1.42899 * 110.62974 * 265.28196 * 23 22 21 26 26 H 0.97003 * 119.99635 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46649 * 59.99969 * 9 7 2 28 28 H 1.09004 * 109.47261 * 300.00000 * 9 7 2 29 29 H 1.08996 * 109.47263 * 59.99578 * 10 9 7 30 30 H 1.09004 * 109.46879 * 300.00206 * 10 9 7 31 31 H 1.09004 * 109.47395 * 59.99888 * 11 10 9 32 32 H 1.08995 * 109.47425 * 300.00026 * 11 10 9 33 33 H 1.00900 * 111.00069 * 299.99707 * 14 12 11 34 34 H 1.00901 * 111.00120 * 63.95137 * 14 12 11 35 35 H 0.96995 * 120.00018 * 0.27749 * 17 15 12 36 36 H 1.08994 * 110.36863 * 213.49686 * 20 18 17 37 37 H 1.08996 * 110.37022 * 335.83059 * 20 18 17 38 38 H 1.09002 * 110.36948 * 200.62326 * 22 21 20 39 39 H 1.09000 * 110.46607 * 78.33466 * 22 21 20 40 40 H 0.96705 * 113.99712 * 294.70211 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6622 0.0018 11 6 1.4802 -4.9871 0.0012 12 6 2.4744 -6.1501 0.0018 13 1 3.1578 -6.0433 0.8442 14 7 3.2384 -6.1419 -1.2528 15 6 1.7248 -7.4516 0.1251 16 8 1.5132 -8.1253 -0.8610 17 7 1.2897 -7.8671 1.3311 18 6 0.5605 -9.1322 1.4507 19 1 -0.0536 -9.3030 0.5666 20 6 1.5431 -10.3053 1.6623 21 8 1.6036 -10.4772 3.0986 22 6 0.2453 -10.3093 3.5599 23 6 -0.3128 -9.1352 2.7254 24 1 -1.3583 -9.3100 2.4716 25 8 -0.1700 -7.9020 3.4331 26 1 -0.4850 0.8401 -0.0004 27 1 0.6247 -2.5571 -0.8897 28 1 0.6240 -2.5568 0.8903 29 1 2.8712 -3.6040 0.8922 30 1 2.8726 -3.6048 -0.8877 31 1 0.8545 -5.0450 -0.8895 32 1 0.8525 -5.0447 0.8904 33 1 2.6268 -6.2396 -2.0493 34 1 3.8002 -5.3071 -1.3285 35 1 1.4554 -7.3264 2.1191 36 1 1.1627 -11.2092 1.1866 37 1 2.5267 -10.0524 1.2665 38 1 0.2330 -10.0603 4.6210 39 1 -0.3340 -11.2143 3.3765 40 1 -0.6969 -7.8496 4.2423 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691594289.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:14 Heat of formation + Delta-G solvation = -143.302696 kcal Electronic energy + Delta-G solvation = -21225.648579 eV Core-core repulsion = 17846.848866 eV Total energy + Delta-G solvation = -3378.799713 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.57924 -39.14573 -36.44901 -35.99031 -34.34891 -33.33509 -31.21870 -30.35935 -28.83368 -27.66522 -25.34352 -23.52449 -22.52431 -21.14647 -20.22492 -20.06378 -17.89809 -17.48701 -16.88906 -16.65545 -16.30301 -15.82826 -14.99177 -14.88501 -14.64484 -14.45337 -14.37279 -13.78930 -13.63315 -13.16877 -12.93417 -12.53061 -12.35475 -12.03709 -11.86580 -11.81854 -11.69466 -11.18612 -10.80296 -10.72772 -10.70567 -10.55822 -10.11296 -9.80392 -9.73589 -9.36790 -9.12491 -9.05653 -8.45063 -8.36475 -6.02068 -4.04880 2.71673 2.96404 3.30593 3.36895 3.40178 3.52854 3.70991 4.11864 4.36963 4.44024 4.55690 4.80439 4.87304 4.92354 5.03636 5.12243 5.19979 5.28604 5.33863 5.36675 5.41975 5.53818 5.81709 6.00816 6.28406 6.30085 6.37571 6.60711 6.76941 7.04607 7.18997 7.21163 7.59967 7.63502 7.64470 7.77400 7.97369 8.30670 8.39437 9.02313 9.59511 11.09164 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.027392 B = 0.003401 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.967286 B = 8229.850206 C = 8857.614360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.109 4.109 11 C -0.146 4.146 12 C 0.077 3.923 13 H 0.100 0.900 14 N -0.830 5.830 15 C 0.525 3.475 16 O -0.540 6.540 17 N -0.710 5.710 18 C 0.122 3.878 19 H 0.108 0.892 20 C 0.034 3.966 21 O -0.367 6.367 22 C 0.014 3.986 23 C 0.065 3.935 24 H 0.082 0.918 25 O -0.551 6.551 26 H 0.260 0.740 27 H 0.014 0.986 28 H 0.016 0.984 29 H 0.051 0.949 30 H 0.048 0.952 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.348 0.652 34 H 0.352 0.648 35 H 0.414 0.586 36 H 0.072 0.928 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.069 0.931 40 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.103 -20.554 7.073 21.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.146 4.146 11 C -0.186 4.186 12 C -0.038 4.038 13 H 0.117 0.883 14 N -0.362 5.362 15 C 0.312 3.688 16 O -0.416 6.416 17 N -0.364 5.364 18 C 0.015 3.985 19 H 0.126 0.874 20 C -0.044 4.044 21 O -0.286 6.286 22 C -0.064 4.064 23 C 0.005 3.995 24 H 0.100 0.900 25 O -0.358 6.358 26 H 0.070 0.930 27 H 0.033 0.967 28 H 0.034 0.966 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.162 0.838 34 H 0.167 0.833 35 H 0.251 0.749 36 H 0.090 0.910 37 H 0.120 0.880 38 H 0.117 0.883 39 H 0.087 0.913 40 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -0.448 -21.491 6.282 22.395 hybrid contribution -0.775 1.953 0.547 2.171 sum -1.223 -19.538 6.829 20.733 Atomic orbital electron populations 1.69971 1.06081 1.26604 1.50831 1.25036 0.94851 0.99303 0.95301 0.86592 0.79850 0.83440 0.78116 1.20662 1.21227 1.19843 1.21257 0.93028 0.91090 1.50625 0.92671 1.19080 0.93944 0.91283 0.97206 1.21649 0.99127 0.93514 1.00342 1.22395 0.98311 0.95045 1.02818 1.21409 0.95520 0.91236 0.95684 0.88255 1.58690 1.28199 1.46065 1.03278 1.20813 0.78384 0.87139 0.82497 1.90645 1.56855 1.57002 1.37141 1.45698 1.57630 1.22513 1.10585 1.22335 0.92985 0.85728 0.97417 0.87383 1.24048 1.01572 0.96803 0.82009 1.89252 1.25752 1.92939 1.20618 1.24202 0.84587 0.97466 1.00124 1.23459 0.99100 0.85127 0.91858 0.90009 1.86410 1.71879 1.35652 1.41825 0.93004 0.96738 0.96596 0.93014 0.93377 0.91877 0.91415 0.83796 0.83348 0.74904 0.91005 0.88028 0.88307 0.91265 0.76455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.94 13.29 55.43 0.74 -26.20 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -14.69 9.11 -34.44 -0.31 -15.00 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.11 -2.13 4.92 -26.73 -0.13 -2.26 16 11 C -0.15 -2.42 4.84 -26.73 -0.13 -2.55 16 12 C 0.08 1.11 3.21 -68.87 -0.22 0.89 16 13 H 0.10 1.34 8.14 -51.93 -0.42 0.91 16 14 N -0.83 -12.06 8.94 -5.66 -0.05 -12.11 16 15 C 0.52 7.81 7.08 -10.99 -0.08 7.74 16 16 O -0.54 -9.48 15.93 5.55 0.09 -9.39 16 17 N -0.71 -8.73 4.91 -52.28 -0.26 -8.99 16 18 C 0.12 1.26 3.44 -66.35 -0.23 1.03 16 19 H 0.11 1.17 7.61 -51.93 -0.40 0.77 16 20 C 0.03 0.34 7.38 37.94 0.28 0.61 16 21 O -0.37 -3.89 11.66 -35.23 -0.41 -4.30 16 22 C 0.01 0.09 7.38 37.93 0.28 0.37 16 23 C 0.06 0.49 4.49 -25.16 -0.11 0.38 16 24 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 25 O -0.55 -4.48 11.57 -35.23 -0.41 -4.89 16 26 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 27 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.05 0.91 6.87 -51.93 -0.36 0.55 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.35 5.20 8.58 -39.29 -0.34 4.87 16 34 H 0.35 4.80 7.55 -39.29 -0.30 4.50 16 35 H 0.41 4.91 7.23 -40.82 -0.30 4.61 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.10 1.16 8.06 -51.93 -0.42 0.74 16 38 H 0.10 0.54 8.09 -51.93 -0.42 0.12 16 39 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.39 1.44 9.12 45.56 0.42 1.85 16 LS Contribution 331.86 15.07 5.00 5.00 Total: -1.00 -34.20 331.86 -6.66 -40.86 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -5.45 Total: 10.28 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: -0.89 Total: -6.85 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: 0.43 Total: -47.30 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: -0.73 Total: -18.58 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.20 -6.66 -40.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691594289.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.442 kcal (2) G-P(sol) polarization free energy of solvation -34.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds