Wall clock time and date at job start Mon Mar 30 2020 04:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 120.00051 * 2 1 4 4 H 1.48504 * 109.46882 * 269.99401 * 3 2 1 5 5 H 1.48495 * 109.47240 * 29.99763 * 3 2 1 6 6 H 1.48497 * 109.46983 * 149.99639 * 3 2 1 7 7 C 1.37879 * 119.99822 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00113 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00173 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47423 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47230 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47244 * 179.97438 * 11 10 9 13 13 H 1.09004 * 109.46838 * 55.00342 * 12 11 10 14 14 N 1.46894 * 109.47192 * 295.00265 * 12 11 10 15 15 C 1.50696 * 109.47188 * 174.99830 * 12 11 10 16 16 O 1.21284 * 120.00109 * 100.00273 * 15 12 11 17 17 N 1.34777 * 120.00137 * 280.00058 * 15 12 11 18 18 C 1.46506 * 119.99873 * 179.97438 * 17 15 12 19 19 H 1.08994 * 110.45766 * 325.70580 * 18 17 15 20 20 C 1.54483 * 110.50877 * 88.31044 * 18 17 15 21 21 O 1.44786 * 104.62929 * 94.70150 * 20 18 17 22 22 C 1.44426 * 105.29347 * 40.53398 * 21 20 18 23 23 C 1.54478 * 104.80698 * 319.45246 * 22 21 20 24 24 H 1.08996 * 110.51353 * 142.62198 * 23 22 21 25 25 O 1.42899 * 110.62974 * 265.28196 * 23 22 21 26 26 H 0.97003 * 119.99635 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46649 * 59.99969 * 9 7 2 28 28 H 1.09004 * 109.47261 * 300.00000 * 9 7 2 29 29 H 1.08996 * 109.47263 * 59.99578 * 10 9 7 30 30 H 1.09004 * 109.46879 * 300.00206 * 10 9 7 31 31 H 1.09004 * 109.47395 * 59.99888 * 11 10 9 32 32 H 1.08995 * 109.47425 * 300.00026 * 11 10 9 33 33 H 1.00900 * 111.00069 * 299.99707 * 14 12 11 34 34 H 1.00901 * 111.00120 * 63.95137 * 14 12 11 35 35 H 0.96995 * 120.00018 * 0.27749 * 17 15 12 36 36 H 1.08994 * 110.36863 * 213.49686 * 20 18 17 37 37 H 1.08996 * 110.37022 * 335.83059 * 20 18 17 38 38 H 1.09002 * 110.36948 * 200.62326 * 22 21 20 39 39 H 1.09000 * 110.46607 * 78.33466 * 22 21 20 40 40 H 0.96705 * 113.99712 * 294.70211 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6622 0.0018 11 6 1.4802 -4.9871 0.0012 12 6 2.4744 -6.1501 0.0018 13 1 3.1578 -6.0433 0.8442 14 7 3.2384 -6.1419 -1.2528 15 6 1.7248 -7.4516 0.1251 16 8 1.5132 -8.1253 -0.8610 17 7 1.2897 -7.8671 1.3311 18 6 0.5605 -9.1322 1.4507 19 1 -0.0536 -9.3030 0.5666 20 6 1.5431 -10.3053 1.6623 21 8 1.6036 -10.4772 3.0986 22 6 0.2453 -10.3093 3.5599 23 6 -0.3128 -9.1352 2.7254 24 1 -1.3583 -9.3100 2.4716 25 8 -0.1700 -7.9020 3.4331 26 1 -0.4850 0.8401 -0.0004 27 1 0.6247 -2.5571 -0.8897 28 1 0.6240 -2.5568 0.8903 29 1 2.8712 -3.6040 0.8922 30 1 2.8726 -3.6048 -0.8877 31 1 0.8545 -5.0450 -0.8895 32 1 0.8525 -5.0447 0.8904 33 1 2.6268 -6.2396 -2.0493 34 1 3.8002 -5.3071 -1.3285 35 1 1.4554 -7.3264 2.1191 36 1 1.1627 -11.2092 1.1866 37 1 2.5267 -10.0524 1.2665 38 1 0.2330 -10.0603 4.6210 39 1 -0.3340 -11.2143 3.3765 40 1 -0.6969 -7.8496 4.2423 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691594289.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:14 Heat of formation + Delta-G solvation = -173.122975 kcal Electronic energy + Delta-G solvation = -21226.941684 eV Core-core repulsion = 17846.848866 eV Total energy + Delta-G solvation = -3380.092818 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.46953 -40.12047 -37.41124 -37.07419 -35.35838 -35.25891 -32.99941 -31.17470 -29.62132 -29.15862 -26.89406 -24.67069 -23.75651 -22.09068 -21.73698 -21.20819 -18.78124 -18.45974 -18.34094 -17.70301 -17.40157 -16.67555 -16.50211 -16.16175 -16.03827 -15.74311 -15.42604 -14.90877 -14.64907 -14.29667 -14.22460 -13.74981 -13.65043 -13.58765 -13.06196 -12.90510 -12.65141 -12.56626 -12.45826 -12.40358 -12.33242 -11.51061 -11.43874 -11.32607 -11.26970 -10.81184 -10.72711 -10.56114 -10.03193 -9.68043 -8.20422 -6.31794 1.40564 1.41571 1.52642 1.55031 2.01340 2.40948 2.88768 3.07878 3.12942 3.50173 3.66536 3.71446 3.76648 3.97868 4.02701 4.08154 4.18419 4.37309 4.42379 4.51989 4.57750 4.64014 4.73234 4.75937 4.82521 5.00770 5.17264 5.22973 5.38808 5.51540 5.67197 5.72438 5.84667 6.04543 6.23624 6.48499 6.53201 6.82324 6.85909 7.21411 7.37939 8.91326 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.027392 B = 0.003401 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.967286 B = 8229.850206 C = 8857.614360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.965 3.035 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.024 3.976 10 C -0.095 4.095 11 C -0.132 4.132 12 C 0.085 3.915 13 H 0.116 0.884 14 N -0.830 5.830 15 C 0.523 3.477 16 O -0.571 6.571 17 N -0.700 5.700 18 C 0.109 3.891 19 H 0.102 0.898 20 C 0.038 3.962 21 O -0.391 6.391 22 C 0.013 3.987 23 C 0.072 3.928 24 H 0.105 0.895 25 O -0.572 6.572 26 H 0.263 0.737 27 H -0.015 1.015 28 H -0.009 1.009 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.068 0.932 33 H 0.346 0.654 34 H 0.357 0.643 35 H 0.417 0.583 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.114 0.886 39 H 0.091 0.909 40 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.450 -20.906 8.076 22.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.790 3.210 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.581 4.581 8 H 0.081 0.919 9 C -0.013 4.013 10 C -0.132 4.132 11 C -0.172 4.172 12 C -0.031 4.031 13 H 0.134 0.866 14 N -0.363 5.363 15 C 0.309 3.691 16 O -0.450 6.450 17 N -0.353 5.353 18 C 0.003 3.997 19 H 0.120 0.880 20 C -0.040 4.040 21 O -0.311 6.311 22 C -0.063 4.063 23 C 0.012 3.988 24 H 0.123 0.877 25 O -0.382 6.382 26 H 0.072 0.928 27 H 0.004 0.996 28 H 0.009 0.991 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.159 0.841 34 H 0.172 0.828 35 H 0.255 0.745 36 H 0.108 0.892 37 H 0.100 0.900 38 H 0.132 0.868 39 H 0.110 0.890 40 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 0.205 -21.857 7.329 23.054 hybrid contribution -1.032 2.032 0.281 2.297 sum -0.827 -19.825 7.610 21.251 Atomic orbital electron populations 1.70107 1.07875 1.27732 1.51804 1.26006 0.95752 1.03461 0.94772 0.85446 0.78746 0.78414 0.78441 1.19918 1.20861 1.18506 1.21732 0.93677 0.92320 1.50336 0.91868 1.19001 0.94468 0.93282 0.94581 1.21433 0.97960 0.92589 1.01242 1.22199 0.98290 0.94509 1.02201 1.21343 0.95113 0.90269 0.96345 0.86589 1.58703 1.28079 1.46319 1.03166 1.20815 0.78333 0.87061 0.82850 1.90629 1.58187 1.57939 1.38221 1.45659 1.56761 1.23108 1.09782 1.22578 0.93403 0.84838 0.98887 0.88017 1.23963 1.00458 0.97359 0.82213 1.89221 1.28104 1.93090 1.20640 1.24418 0.83088 0.98109 1.00733 1.23458 0.99626 0.85213 0.90543 0.87726 1.86349 1.72750 1.36017 1.43069 0.92833 0.99622 0.99057 0.91981 0.92481 0.93247 0.91369 0.84081 0.82772 0.74539 0.89213 0.90010 0.86822 0.89046 0.74257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.05 13.29 21.45 0.28 -56.77 16 2 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 3 Si 0.97 44.02 29.54 68.60 2.03 46.05 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 7 C -0.54 -30.59 9.11 25.60 0.23 -30.36 16 8 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 9 C 0.02 1.24 4.97 29.85 0.15 1.39 16 10 C -0.09 -3.66 4.92 30.59 0.15 -3.51 16 11 C -0.13 -4.34 4.84 30.59 0.15 -4.19 16 12 C 0.08 2.38 3.21 44.17 0.14 2.52 16 13 H 0.12 2.90 8.14 -2.39 -0.02 2.88 16 14 N -0.83 -23.41 8.94 -171.81 -1.54 -24.94 16 15 C 0.52 15.32 7.08 87.66 0.62 15.94 16 16 O -0.57 -20.02 15.93 -3.04 -0.05 -20.07 16 17 N -0.70 -16.70 4.91 -437.71 -2.15 -18.85 16 18 C 0.11 2.15 3.44 46.01 0.16 2.30 16 19 H 0.10 2.14 7.61 -2.39 -0.02 2.12 16 20 C 0.04 0.72 7.38 72.49 0.53 1.26 16 21 O -0.39 -7.71 11.66 -148.98 -1.74 -9.45 16 22 C 0.01 0.15 7.38 72.48 0.54 0.68 16 23 C 0.07 0.93 4.49 31.61 0.14 1.07 16 24 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 25 O -0.57 -8.23 11.57 -148.98 -1.72 -9.95 16 26 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 27 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 28 H -0.01 -0.51 8.14 -2.39 -0.02 -0.52 16 29 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.06 2.10 6.87 -2.39 -0.02 2.08 16 31 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 32 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.35 10.21 8.58 -89.69 -0.77 9.44 16 34 H 0.36 9.27 7.55 -89.69 -0.68 8.60 16 35 H 0.42 9.45 7.23 -92.71 -0.67 8.78 16 36 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.08 1.87 8.06 -2.39 -0.02 1.85 16 38 H 0.11 0.93 8.09 -2.39 -0.02 0.91 16 39 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.41 2.13 9.12 -74.05 -0.68 1.45 16 Total: -1.00 -73.74 331.86 -3.32 -77.07 By element: Atomic # 1 Polarization: 31.20 SS G_CDS: -1.71 Total: 29.48 kcal Atomic # 6 Polarization: -15.84 SS G_CDS: 3.27 Total: -12.56 kcal Atomic # 7 Polarization: -97.16 SS G_CDS: -3.40 Total: -100.56 kcal Atomic # 8 Polarization: -35.96 SS G_CDS: -3.51 Total: -39.47 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -73.74 -3.32 -77.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691594289.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.058 kcal (2) G-P(sol) polarization free energy of solvation -73.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds