Wall clock time and date at job start Mon Mar 30 2020 05:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 113.99552 * 2 1 4 4 H 1.08998 * 110.91969 * 32.44896 * 3 2 1 5 5 C 1.54919 * 111.00378 * 268.54867 * 3 2 1 6 6 N 1.47428 * 104.83030 * 204.91963 * 5 3 2 7 7 C 1.34775 * 125.64514 * 204.08983 * 6 5 3 8 8 O 1.21286 * 120.00064 * 359.97438 * 7 6 5 9 9 C 1.50697 * 119.99977 * 179.97438 * 7 6 5 10 10 H 1.08996 * 109.47188 * 40.00225 * 9 7 6 11 11 N 1.46905 * 109.47125 * 160.00003 * 9 7 6 12 12 C 1.53001 * 109.47213 * 279.99847 * 9 7 6 13 13 C 1.52995 * 109.47332 * 174.99878 * 12 9 7 14 14 C 1.50694 * 109.47452 * 180.02562 * 13 12 9 15 15 H 1.08004 * 119.99671 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00375 * 180.02562 * 14 13 12 17 17 N 1.31510 * 119.99760 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00357 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47174 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47230 * 119.99414 * 18 16 14 21 21 H 1.48494 * 109.47232 * 240.00180 * 18 16 14 22 22 C 1.47019 * 108.70516 * 24.35459 * 6 5 3 23 23 C 1.54340 * 107.26620 * 358.58493 * 22 6 5 24 24 H 1.08999 * 110.51225 * 96.45215 * 23 22 6 25 25 O 1.42898 * 111.00141 * 219.60121 * 23 22 6 26 26 H 1.08998 * 109.47658 * 60.00190 * 1 2 3 27 27 H 1.09006 * 109.46956 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47229 * 299.99402 * 1 2 3 29 29 H 1.08992 * 110.36981 * 86.07561 * 5 3 2 30 30 H 1.09008 * 110.36513 * 323.75654 * 5 3 2 31 31 H 1.00901 * 110.99869 * 296.04907 * 11 9 7 32 32 H 1.00896 * 110.99543 * 60.00030 * 11 9 7 33 33 H 1.08997 * 109.47039 * 295.00606 * 12 9 7 34 34 H 1.09001 * 109.46723 * 55.00082 * 12 9 7 35 35 H 1.09001 * 109.46974 * 300.00562 * 13 12 9 36 36 H 1.09004 * 109.46840 * 59.99935 * 13 12 9 37 37 H 0.97001 * 119.99959 * 180.02562 * 17 16 14 38 38 H 1.09000 * 109.88412 * 118.13222 * 22 6 5 39 39 H 1.09005 * 109.88152 * 239.29682 * 22 6 5 40 40 H 0.96693 * 114.00191 * 293.78028 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3835 2.0105 0.5463 5 6 2.2694 1.7979 -1.4458 6 7 3.3609 2.7808 -1.3196 7 6 3.6192 3.7829 -2.1831 8 8 2.9231 3.9318 -3.1651 9 6 4.7729 4.7183 -1.9285 10 1 5.6240 4.1513 -1.5514 11 7 5.1468 5.3872 -3.1819 12 6 4.3603 5.7674 -0.8941 13 6 5.5671 6.6397 -0.5429 14 6 5.1608 7.6726 0.4764 15 1 4.1434 7.7039 0.8374 16 6 6.0877 8.5782 0.9475 17 7 7.3264 8.5402 0.5076 18 14 5.5839 9.8589 2.2105 19 1 4.1454 9.6911 2.5390 20 1 6.3964 9.6867 3.4414 21 1 5.8089 11.2174 1.6548 22 6 4.1249 2.4831 -0.0993 23 6 3.4485 1.2740 0.5810 24 1 3.9550 0.3487 0.3066 25 8 3.4238 1.4330 2.0009 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.3759 2.2730 -1.8507 30 1 2.5786 0.9669 -2.0798 31 1 5.4846 4.7211 -3.8604 32 1 4.3740 5.9199 -3.5519 33 1 3.5680 6.3921 -1.3064 34 1 3.9987 5.2684 0.0050 35 1 6.3594 6.0148 -0.1306 36 1 5.9287 7.1387 -1.4421 37 1 7.9786 9.1771 0.8393 38 1 5.1549 2.2372 -0.3575 39 1 4.1034 3.3428 0.5705 40 1 4.2983 1.4203 2.4133 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691600206.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:15 Heat of formation + Delta-G solvation = -130.754888 kcal Electronic energy + Delta-G solvation = -21648.985651 eV Core-core repulsion = 18270.730052 eV Total energy + Delta-G solvation = -3378.255600 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.47604 -38.81278 -37.07857 -35.64198 -35.24219 -32.82383 -30.61524 -30.08573 -28.65235 -27.11983 -26.14613 -24.18685 -22.68448 -21.40074 -20.40190 -19.27775 -18.01748 -17.51356 -16.70449 -16.20744 -15.87459 -15.68894 -15.45469 -15.14316 -14.96496 -14.39306 -14.14743 -13.76350 -13.59662 -13.24077 -12.84274 -12.65616 -12.40547 -12.25557 -12.03053 -11.74874 -11.57781 -10.93420 -10.90023 -10.72484 -10.61275 -10.50242 -10.17327 -10.00168 -9.81658 -9.40189 -9.01467 -8.76562 -8.39676 -8.24242 -5.95747 -3.97894 2.64790 2.75611 3.28341 3.32839 3.40640 3.44565 3.93022 4.07181 4.44970 4.48645 4.68718 4.76369 4.89595 4.98151 5.00565 5.07573 5.13780 5.35776 5.38113 5.40157 5.43152 5.52410 5.55289 5.62414 5.79151 6.05616 6.41755 6.62349 6.78340 7.04423 7.28503 7.34663 7.47325 7.73449 7.75431 7.93320 8.10433 8.16329 8.46339 9.10121 9.65559 11.15152 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.019665 B = 0.004434 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.526234 B = 6313.779411 C = 7143.749239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.373 6.373 3 C 0.082 3.918 4 H 0.090 0.910 5 C 0.085 3.915 6 N -0.613 5.613 7 C 0.501 3.499 8 O -0.550 6.550 9 C 0.083 3.917 10 H 0.098 0.902 11 N -0.806 5.806 12 C -0.096 4.096 13 C 0.032 3.968 14 C -0.522 4.522 15 H 0.052 0.948 16 C 0.058 3.942 17 N -0.892 5.892 18 Si 0.888 3.112 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.284 1.284 22 C 0.067 3.933 23 C 0.100 3.900 24 H 0.084 0.916 25 O -0.552 6.552 26 H 0.044 0.956 27 H 0.089 0.911 28 H 0.046 0.954 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.334 0.666 32 H 0.348 0.652 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.013 0.987 36 H 0.035 0.965 37 H 0.259 0.741 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.498 -17.868 -0.836 19.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.290 6.290 3 C 0.023 3.977 4 H 0.108 0.892 5 C -0.039 4.039 6 N -0.350 5.350 7 C 0.289 3.711 8 O -0.427 6.427 9 C -0.033 4.033 10 H 0.116 0.884 11 N -0.334 5.334 12 C -0.134 4.134 13 C -0.005 4.005 14 C -0.560 4.560 15 H 0.071 0.929 16 C -0.143 4.143 17 N -0.532 5.532 18 Si 0.716 3.284 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.057 4.057 23 C 0.040 3.960 24 H 0.102 0.898 25 O -0.357 6.357 26 H 0.063 0.937 27 H 0.107 0.893 28 H 0.065 0.935 29 H 0.101 0.899 30 H 0.095 0.905 31 H 0.146 0.854 32 H 0.162 0.838 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.031 0.969 36 H 0.054 0.946 37 H 0.069 0.931 38 H 0.099 0.901 39 H 0.112 0.888 40 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -8.666 -17.362 -1.068 19.434 hybrid contribution -0.583 0.252 0.386 0.743 sum -9.249 -17.110 -0.682 19.462 Atomic orbital electron populations 1.22850 0.80372 1.03027 1.00450 1.87888 1.20303 1.26065 1.94761 1.23215 0.94299 0.85757 0.94437 0.89226 1.22609 0.92008 0.92521 0.96716 1.48365 1.31306 1.30332 1.25009 1.22639 0.87362 0.79766 0.81319 1.90657 1.51085 1.72242 1.28743 1.21837 0.93192 0.93911 0.94339 0.88449 1.59021 1.40097 1.28053 1.06204 1.21674 1.01866 0.95487 0.94349 1.19013 0.90981 0.93504 0.96999 1.21305 0.96038 1.15033 1.23655 0.92941 1.24984 0.95003 0.97571 0.96724 1.69982 1.02685 1.36851 1.43638 0.86598 0.78597 0.81718 0.81442 1.19853 1.21075 1.21050 1.22912 0.96189 0.99303 0.87309 1.22751 0.95003 0.96675 0.81596 0.89778 1.86538 1.34883 1.96159 1.18159 0.93743 0.89296 0.93546 0.89903 0.90472 0.85393 0.83756 0.92810 0.92806 0.96885 0.94645 0.93141 0.90086 0.88768 0.76447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.89 101.05 1.10 1.33 16 2 O -0.37 -4.00 10.51 -35.23 -0.37 -4.37 16 3 C 0.08 0.90 3.22 -24.58 -0.08 0.82 16 4 H 0.09 1.02 7.90 -51.93 -0.41 0.61 16 5 C 0.09 1.02 6.64 -2.52 -0.02 1.00 16 6 N -0.61 -8.29 3.33 -170.50 -0.57 -8.86 16 7 C 0.50 8.19 7.09 -10.99 -0.08 8.11 16 8 O -0.55 -10.41 16.51 5.55 0.09 -10.32 16 9 C 0.08 1.40 2.57 -68.86 -0.18 1.23 16 10 H 0.10 1.55 7.52 -51.93 -0.39 1.16 16 11 N -0.81 -13.64 8.44 -5.65 -0.05 -13.68 16 12 C -0.10 -1.93 4.77 -26.73 -0.13 -2.05 16 13 C 0.03 0.81 4.86 -27.89 -0.14 0.67 16 14 C -0.52 -14.63 9.11 -34.44 -0.31 -14.94 16 15 H 0.05 1.44 7.74 -52.48 -0.41 1.04 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 17 N -0.89 -26.65 13.29 55.43 0.74 -25.91 16 18 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 19 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 C 0.07 0.74 5.97 -3.06 -0.02 0.72 16 23 C 0.10 1.00 4.05 -24.89 -0.10 0.90 16 24 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 25 O -0.55 -5.59 13.40 -35.23 -0.47 -6.06 16 26 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.35 8.11 -51.93 -0.42 -0.07 16 29 H 0.08 1.04 8.04 -51.93 -0.42 0.62 16 30 H 0.08 0.88 8.14 -51.92 -0.42 0.46 16 31 H 0.33 4.89 9.06 -39.29 -0.36 4.54 16 32 H 0.35 5.98 8.58 -39.29 -0.34 5.64 16 33 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.05 1.03 6.63 -51.93 -0.34 0.69 16 35 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.04 0.97 7.75 -51.93 -0.40 0.57 16 37 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 38 H 0.08 0.78 7.94 -51.93 -0.41 0.36 16 39 H 0.09 1.17 6.62 -51.93 -0.34 0.82 16 40 H 0.39 2.27 9.12 45.56 0.42 2.68 16 LS Contribution 333.12 15.07 5.02 5.02 Total: -1.00 -34.07 333.12 -6.17 -40.24 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -5.50 Total: 8.01 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: -0.04 Total: -0.64 kcal Atomic # 7 Polarization: -48.57 SS G_CDS: 0.12 Total: -48.45 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: -0.75 Total: -20.75 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.07 -6.17 -40.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691600206.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.517 kcal (2) G-P(sol) polarization free energy of solvation -34.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds