Wall clock time and date at job start Mon Mar 30 2020 05:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 113.99552 * 2 1 4 4 H 1.08998 * 110.91969 * 32.44896 * 3 2 1 5 5 C 1.54919 * 111.00378 * 268.54867 * 3 2 1 6 6 N 1.47428 * 104.83030 * 204.91963 * 5 3 2 7 7 C 1.34775 * 125.64514 * 204.08983 * 6 5 3 8 8 O 1.21286 * 120.00064 * 359.97438 * 7 6 5 9 9 C 1.50697 * 119.99977 * 179.97438 * 7 6 5 10 10 H 1.08996 * 109.47188 * 40.00225 * 9 7 6 11 11 N 1.46905 * 109.47125 * 160.00003 * 9 7 6 12 12 C 1.53001 * 109.47213 * 279.99847 * 9 7 6 13 13 C 1.52995 * 109.47332 * 174.99878 * 12 9 7 14 14 C 1.50694 * 109.47452 * 180.02562 * 13 12 9 15 15 H 1.08004 * 119.99671 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00375 * 180.02562 * 14 13 12 17 17 N 1.31510 * 119.99760 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00357 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47174 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47230 * 119.99414 * 18 16 14 21 21 H 1.48494 * 109.47232 * 240.00180 * 18 16 14 22 22 C 1.47019 * 108.70516 * 24.35459 * 6 5 3 23 23 C 1.54340 * 107.26620 * 358.58493 * 22 6 5 24 24 H 1.08999 * 110.51225 * 96.45215 * 23 22 6 25 25 O 1.42898 * 111.00141 * 219.60121 * 23 22 6 26 26 H 1.08998 * 109.47658 * 60.00190 * 1 2 3 27 27 H 1.09006 * 109.46956 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47229 * 299.99402 * 1 2 3 29 29 H 1.08992 * 110.36981 * 86.07561 * 5 3 2 30 30 H 1.09008 * 110.36513 * 323.75654 * 5 3 2 31 31 H 1.00901 * 110.99869 * 296.04907 * 11 9 7 32 32 H 1.00896 * 110.99543 * 60.00030 * 11 9 7 33 33 H 1.08997 * 109.47039 * 295.00606 * 12 9 7 34 34 H 1.09001 * 109.46723 * 55.00082 * 12 9 7 35 35 H 1.09001 * 109.46974 * 300.00562 * 13 12 9 36 36 H 1.09004 * 109.46840 * 59.99935 * 13 12 9 37 37 H 0.97001 * 119.99959 * 180.02562 * 17 16 14 38 38 H 1.09000 * 109.88412 * 118.13222 * 22 6 5 39 39 H 1.09005 * 109.88152 * 239.29682 * 22 6 5 40 40 H 0.96693 * 114.00191 * 293.78028 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3835 2.0105 0.5463 5 6 2.2694 1.7979 -1.4458 6 7 3.3609 2.7808 -1.3196 7 6 3.6192 3.7829 -2.1831 8 8 2.9231 3.9318 -3.1651 9 6 4.7729 4.7183 -1.9285 10 1 5.6240 4.1513 -1.5514 11 7 5.1468 5.3872 -3.1819 12 6 4.3603 5.7674 -0.8941 13 6 5.5671 6.6397 -0.5429 14 6 5.1608 7.6726 0.4764 15 1 4.1434 7.7039 0.8374 16 6 6.0877 8.5782 0.9475 17 7 7.3264 8.5402 0.5076 18 14 5.5839 9.8589 2.2105 19 1 4.1454 9.6911 2.5390 20 1 6.3964 9.6867 3.4414 21 1 5.8089 11.2174 1.6548 22 6 4.1249 2.4831 -0.0993 23 6 3.4485 1.2740 0.5810 24 1 3.9550 0.3487 0.3066 25 8 3.4238 1.4330 2.0009 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.3759 2.2730 -1.8507 30 1 2.5786 0.9669 -2.0798 31 1 5.4846 4.7211 -3.8604 32 1 4.3740 5.9199 -3.5519 33 1 3.5680 6.3921 -1.3064 34 1 3.9987 5.2684 0.0050 35 1 6.3594 6.0148 -0.1306 36 1 5.9287 7.1387 -1.4421 37 1 7.9786 9.1771 0.8393 38 1 5.1549 2.2372 -0.3575 39 1 4.1034 3.3428 0.5705 40 1 4.2983 1.4203 2.4133 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691600206.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:14 Heat of formation + Delta-G solvation = -159.730899 kcal Electronic energy + Delta-G solvation = -21650.242145 eV Core-core repulsion = 18270.730052 eV Total energy + Delta-G solvation = -3379.512094 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.58193 -39.85472 -37.88442 -36.88913 -36.53823 -34.82799 -31.98108 -31.53157 -29.58364 -28.25875 -27.43304 -25.65633 -23.99819 -22.29924 -22.09026 -20.49142 -18.81702 -18.76287 -18.31352 -17.50706 -17.09508 -16.93760 -16.43983 -16.39618 -16.06162 -15.92837 -15.21882 -15.13129 -14.56194 -14.36112 -14.27804 -13.82350 -13.68102 -13.55630 -13.43888 -13.20483 -12.81482 -12.52371 -12.42653 -12.26756 -11.86430 -11.76039 -11.63171 -11.36495 -11.15905 -11.01053 -10.82660 -10.49052 -9.86122 -9.68940 -8.13593 -6.23529 1.35905 1.41886 1.43421 1.55268 1.67949 2.44845 2.52150 3.08631 3.18521 3.19741 3.50421 3.62244 3.75275 3.86235 4.02364 4.07840 4.25355 4.28048 4.37585 4.48531 4.53061 4.61238 4.62258 4.71605 4.80473 4.82751 4.91594 5.06469 5.23401 5.57476 5.83564 5.98238 6.02153 6.03826 6.24519 6.30714 6.47492 6.79770 6.90422 6.94634 7.44664 8.97721 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.019665 B = 0.004434 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.526234 B = 6313.779411 C = 7143.749239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.383 6.383 3 C 0.085 3.915 4 H 0.082 0.918 5 C 0.086 3.914 6 N -0.609 5.609 7 C 0.503 3.497 8 O -0.579 6.579 9 C 0.092 3.908 10 H 0.111 0.889 11 N -0.817 5.817 12 C -0.081 4.081 13 C 0.042 3.958 14 C -0.543 4.543 15 H 0.053 0.947 16 C 0.004 3.996 17 N -0.928 5.928 18 Si 0.958 3.042 19 H -0.266 1.266 20 H -0.276 1.276 21 H -0.281 1.281 22 C 0.063 3.937 23 C 0.109 3.891 24 H 0.103 0.897 25 O -0.566 6.566 26 H 0.049 0.951 27 H 0.107 0.893 28 H 0.048 0.952 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.348 0.652 32 H 0.346 0.654 33 H 0.040 0.960 34 H 0.064 0.936 35 H -0.003 1.003 36 H 0.006 0.994 37 H 0.262 0.738 38 H 0.102 0.898 39 H 0.082 0.918 40 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.033 -18.903 0.186 20.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.301 6.301 3 C 0.026 3.974 4 H 0.100 0.900 5 C -0.037 4.037 6 N -0.345 5.345 7 C 0.291 3.709 8 O -0.459 6.459 9 C -0.024 4.024 10 H 0.129 0.871 11 N -0.346 5.346 12 C -0.119 4.119 13 C 0.005 3.995 14 C -0.581 4.581 15 H 0.072 0.928 16 C -0.194 4.194 17 N -0.568 5.568 18 Si 0.783 3.217 19 H -0.190 1.190 20 H -0.202 1.202 21 H -0.207 1.207 22 C -0.060 4.060 23 C 0.049 3.951 24 H 0.121 0.879 25 O -0.375 6.375 26 H 0.067 0.933 27 H 0.126 0.874 28 H 0.067 0.933 29 H 0.092 0.908 30 H 0.104 0.896 31 H 0.161 0.839 32 H 0.159 0.841 33 H 0.059 0.941 34 H 0.083 0.917 35 H 0.016 0.984 36 H 0.025 0.975 37 H 0.071 0.929 38 H 0.120 0.880 39 H 0.100 0.900 40 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -9.196 -18.436 -0.016 20.602 hybrid contribution -0.423 0.524 0.086 0.679 sum -9.620 -17.912 0.070 20.332 Atomic orbital electron populations 1.23051 0.79046 1.04434 1.00831 1.87871 1.21804 1.25666 1.94741 1.23122 0.94942 0.85880 0.93496 0.90030 1.22687 0.91089 0.92153 0.97803 1.48333 1.31647 1.29594 1.24879 1.22275 0.86816 0.80322 0.81456 1.90644 1.51873 1.73270 1.30147 1.21613 0.94037 0.93231 0.93517 0.87114 1.59003 1.40136 1.28760 1.06676 1.21388 0.99171 0.95545 0.95836 1.18807 0.92373 0.93362 0.94999 1.21728 0.96172 1.15912 1.24269 0.92837 1.25853 0.94949 0.99759 0.98793 1.70101 1.03804 1.37899 1.45027 0.85513 0.78619 0.78718 0.78866 1.18990 1.20162 1.20738 1.23105 0.97220 0.99531 0.86148 1.22692 0.94232 0.96625 0.81541 0.87941 1.86500 1.36735 1.96138 1.18114 0.93263 0.87438 0.93301 0.90816 0.89559 0.83892 0.84061 0.94082 0.91711 0.98427 0.97542 0.92903 0.87997 0.89954 0.74356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.89 113.37 1.23 1.55 16 2 O -0.38 -7.50 10.51 -148.98 -1.57 -9.06 16 3 C 0.08 1.72 3.22 31.99 0.10 1.82 16 4 H 0.08 1.78 7.90 -2.39 -0.02 1.76 16 5 C 0.09 1.94 6.64 86.86 0.58 2.51 16 6 N -0.61 -15.66 3.33 -811.74 -2.70 -18.36 16 7 C 0.50 16.07 7.09 87.66 0.62 16.69 16 8 O -0.58 -21.72 16.51 -3.05 -0.05 -21.77 16 9 C 0.09 3.06 2.57 44.17 0.11 3.17 16 10 H 0.11 3.38 7.52 -2.39 -0.02 3.37 16 11 N -0.82 -27.62 8.44 -171.80 -1.45 -29.07 16 12 C -0.08 -3.27 4.77 30.59 0.15 -3.12 16 13 C 0.04 2.14 4.86 29.84 0.15 2.29 16 14 C -0.54 -30.55 9.11 25.60 0.23 -30.32 16 15 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 16 C 0.00 0.25 5.46 84.66 0.46 0.72 16 17 N -0.93 -55.85 13.29 21.45 0.28 -55.57 16 18 Si 0.96 44.11 29.54 68.60 2.03 46.14 16 19 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 20 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 21 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 22 C 0.06 1.28 5.97 86.74 0.52 1.80 16 23 C 0.11 1.94 4.05 31.79 0.13 2.06 16 24 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 25 O -0.57 -10.25 13.40 -148.98 -2.00 -12.25 16 26 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.11 1.09 8.14 -2.38 -0.02 1.07 16 28 H 0.05 0.66 8.11 -2.39 -0.02 0.64 16 29 H 0.07 1.80 8.04 -2.39 -0.02 1.78 16 30 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 31 H 0.35 10.01 9.06 -89.69 -0.81 9.20 16 32 H 0.35 12.00 8.58 -89.70 -0.77 11.23 16 33 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.06 2.45 6.63 -2.39 -0.02 2.43 16 35 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 36 H 0.01 0.35 7.75 -2.38 -0.02 0.33 16 37 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 38 H 0.10 1.68 7.94 -2.39 -0.02 1.66 16 39 H 0.08 1.92 6.62 -2.38 -0.02 1.90 16 40 H 0.40 3.80 9.12 -74.06 -0.68 3.12 16 Total: -1.00 -72.21 333.12 -2.36 -74.57 By element: Atomic # 1 Polarization: 27.39 SS G_CDS: -1.19 Total: 26.20 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: 4.28 Total: -0.84 kcal Atomic # 7 Polarization: -99.13 SS G_CDS: -3.86 Total: -102.99 kcal Atomic # 8 Polarization: -39.46 SS G_CDS: -3.61 Total: -43.08 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -72.21 -2.36 -74.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691600206.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.157 kcal (2) G-P(sol) polarization free energy of solvation -72.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds