Wall clock time and date at job start Mon Mar 30 2020 05:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 114.00181 * 2 1 4 4 H 1.09000 * 110.91657 * 26.09665 * 3 2 1 5 5 C 1.54918 * 111.00429 * 262.20116 * 3 2 1 6 6 N 1.47425 * 104.82827 * 204.91435 * 5 3 2 7 7 C 1.34778 * 125.64271 * 204.07868 * 6 5 3 8 8 O 1.21280 * 120.00070 * 0.03002 * 7 6 5 9 9 C 1.50696 * 119.99911 * 180.02562 * 7 6 5 10 10 H 1.09004 * 109.47017 * 319.99744 * 9 7 6 11 11 N 1.46906 * 109.47326 * 200.00075 * 9 7 6 12 12 C 1.53001 * 109.47642 * 79.99999 * 9 7 6 13 13 C 1.52991 * 109.47724 * 185.00230 * 12 9 7 14 14 C 1.50698 * 109.47625 * 179.97438 * 13 12 9 15 15 H 1.08000 * 119.99383 * 359.97438 * 14 13 12 16 16 C 1.37870 * 120.00501 * 180.02562 * 14 13 12 17 17 N 1.31519 * 120.00100 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 120.00321 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47224 * 89.99601 * 18 16 14 20 20 H 1.48494 * 109.46934 * 209.99764 * 18 16 14 21 21 H 1.48498 * 109.46766 * 329.99515 * 18 16 14 22 22 C 1.47015 * 108.70882 * 24.12597 * 6 5 3 23 23 C 1.54325 * 107.27065 * 358.94051 * 22 6 5 24 24 H 1.08993 * 110.72326 * 96.17079 * 23 22 6 25 25 O 1.42905 * 110.87431 * 219.37607 * 23 22 6 26 26 H 1.09000 * 109.47105 * 299.99915 * 1 2 3 27 27 H 1.08996 * 109.47474 * 60.00235 * 1 2 3 28 28 H 1.09004 * 109.46827 * 180.02562 * 1 2 3 29 29 H 1.08999 * 110.35942 * 323.74628 * 5 3 2 30 30 H 1.08996 * 110.36556 * 86.07461 * 5 3 2 31 31 H 1.00901 * 110.99557 * 299.99844 * 11 9 7 32 32 H 1.00898 * 110.99593 * 63.95461 * 11 9 7 33 33 H 1.09006 * 109.46764 * 305.00502 * 12 9 7 34 34 H 1.09001 * 109.46834 * 64.99262 * 12 9 7 35 35 H 1.09006 * 109.47222 * 299.99991 * 13 12 9 36 36 H 1.09005 * 109.47084 * 59.99345 * 13 12 9 37 37 H 0.96996 * 119.99990 * 179.97438 * 17 16 14 38 38 H 1.09000 * 109.88350 * 239.52260 * 22 6 5 39 39 H 1.08997 * 110.01690 * 118.42776 * 22 6 5 40 40 H 0.96698 * 113.99778 * 293.61074 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3332 2.0328 0.4479 5 6 2.4154 1.7329 -1.4329 6 7 3.4908 2.7229 -1.2414 7 6 3.8375 3.6856 -2.1186 8 8 3.2440 3.7890 -3.1712 9 6 4.9624 4.6334 -1.7916 10 1 4.9086 4.9118 -0.7391 11 7 4.8449 5.8386 -2.6234 12 6 6.3026 3.9500 -2.0705 13 6 7.4445 4.8642 -1.6221 14 6 8.7645 4.1909 -1.8962 15 1 8.7867 3.2088 -2.3450 16 6 9.9437 4.8280 -1.5732 17 7 9.9167 6.0237 -1.0262 18 14 11.5800 3.9936 -1.9137 19 1 12.0465 4.3562 -3.2760 20 1 12.5812 4.4403 -0.9123 21 1 11.4127 2.5208 -1.8234 22 6 4.1232 2.4855 0.0644 23 6 3.3824 1.3034 0.7242 24 1 3.9119 0.3678 0.5444 25 8 3.2147 1.5260 2.1258 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 2.7852 0.8749 -1.9943 30 1 1.5685 2.1873 -1.9469 31 1 4.8919 5.6068 -3.6043 32 1 3.9972 6.3430 -2.4112 33 1 6.3525 3.0101 -1.5208 34 1 6.3939 3.7515 -3.1384 35 1 7.3946 5.8042 -2.1718 36 1 7.3530 5.0627 -0.5542 37 1 10.7463 6.4718 -0.7986 38 1 4.0315 3.3749 0.6879 39 1 5.1753 2.2347 -0.0707 40 1 4.0430 1.5339 2.6246 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691600207.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:17 Heat of formation + Delta-G solvation = -130.897623 kcal Electronic energy + Delta-G solvation = -21578.564694 eV Core-core repulsion = 18200.302905 eV Total energy + Delta-G solvation = -3378.261789 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.47742 -38.82474 -37.09727 -35.66054 -35.24473 -32.82776 -30.63485 -30.08759 -28.65905 -27.11704 -26.13857 -24.21858 -22.69218 -21.43144 -20.36996 -19.29500 -18.05270 -17.47797 -16.73448 -16.27108 -15.86139 -15.69909 -15.38319 -15.17180 -14.95374 -14.45035 -14.20003 -13.74036 -13.58354 -13.22878 -12.84068 -12.71024 -12.37490 -12.31062 -11.99715 -11.78888 -11.57213 -10.99083 -10.89035 -10.73526 -10.62684 -10.53165 -10.18122 -9.99743 -9.81371 -9.40424 -9.03351 -8.76142 -8.39729 -8.24368 -5.96153 -3.98600 2.66394 2.73433 3.28270 3.33418 3.39868 3.42399 3.91472 4.06528 4.42606 4.47922 4.64704 4.76807 4.87153 4.97236 5.01380 5.05928 5.12270 5.35167 5.37588 5.39622 5.45978 5.51244 5.55223 5.61730 5.78867 6.05790 6.40300 6.61882 6.77065 7.03771 7.26785 7.31995 7.47437 7.72831 7.75439 7.92764 8.10140 8.16618 8.45565 9.09314 9.64823 11.14667 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.022448 B = 0.004130 C = 0.003757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.037830 B = 6777.806313 C = 7450.326678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.372 6.372 3 C 0.083 3.917 4 H 0.088 0.912 5 C 0.087 3.913 6 N -0.613 5.613 7 C 0.501 3.499 8 O -0.550 6.550 9 C 0.083 3.917 10 H 0.098 0.902 11 N -0.806 5.806 12 C -0.095 4.095 13 C 0.032 3.968 14 C -0.523 4.523 15 H 0.052 0.948 16 C 0.058 3.942 17 N -0.892 5.892 18 Si 0.889 3.111 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.275 1.275 22 C 0.068 3.932 23 C 0.096 3.904 24 H 0.087 0.913 25 O -0.555 6.555 26 H 0.045 0.955 27 H 0.043 0.957 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.348 0.652 32 H 0.334 0.666 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.035 0.965 36 H 0.013 0.987 37 H 0.260 0.740 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.245 -9.442 5.073 20.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.289 6.289 3 C 0.024 3.976 4 H 0.106 0.894 5 C -0.037 4.037 6 N -0.350 5.350 7 C 0.289 3.711 8 O -0.427 6.427 9 C -0.033 4.033 10 H 0.116 0.884 11 N -0.334 5.334 12 C -0.133 4.133 13 C -0.005 4.005 14 C -0.562 4.562 15 H 0.070 0.930 16 C -0.143 4.143 17 N -0.531 5.531 18 Si 0.717 3.283 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.200 1.200 22 C -0.056 4.056 23 C 0.036 3.964 24 H 0.105 0.895 25 O -0.361 6.361 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.107 0.893 29 H 0.097 0.903 30 H 0.101 0.899 31 H 0.162 0.838 32 H 0.146 0.854 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.054 0.946 36 H 0.031 0.969 37 H 0.069 0.931 38 H 0.103 0.897 39 H 0.108 0.892 40 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -17.254 -9.071 4.705 20.053 hybrid contribution 0.441 -0.756 -0.358 0.946 sum -16.813 -9.827 4.346 19.953 Atomic orbital electron populations 1.22858 0.80404 1.03077 1.00298 1.87902 1.20262 1.26048 1.94691 1.23205 0.94557 0.85889 0.93978 0.89397 1.22568 0.91723 0.92813 0.96574 1.48361 1.35276 1.32301 1.19078 1.22632 0.85220 0.80547 0.82677 1.90656 1.55392 1.72422 1.24249 1.21838 0.93331 0.88595 0.99540 0.88432 1.59021 1.43142 1.20925 1.10284 1.21670 0.91827 0.98798 1.01051 1.19010 0.89958 0.95049 0.96470 1.21266 0.91347 1.02908 1.40638 0.92991 1.24988 0.99055 0.94909 0.95331 1.69973 1.27115 1.13453 1.42587 0.86649 0.83916 0.79709 0.78027 1.20710 1.21274 1.20000 1.22880 0.98716 0.99243 0.84763 1.22845 0.95035 0.96977 0.81504 0.89472 1.86502 1.36427 1.95363 1.17782 0.93624 0.93787 0.89271 0.90275 0.89944 0.83752 0.85399 0.92868 0.92778 0.94642 0.96879 0.93071 0.89737 0.89213 0.76407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.85 101.05 1.10 1.32 16 2 O -0.37 -3.95 10.51 -35.23 -0.37 -4.32 16 3 C 0.08 0.87 3.27 -24.58 -0.08 0.79 16 4 H 0.09 0.90 7.83 -51.93 -0.41 0.50 16 5 C 0.09 1.04 6.64 -2.52 -0.02 1.02 16 6 N -0.61 -8.30 3.33 -170.52 -0.57 -8.87 16 7 C 0.50 8.20 7.09 -10.99 -0.08 8.12 16 8 O -0.55 -10.41 16.51 5.56 0.09 -10.32 16 9 C 0.08 1.40 2.56 -68.86 -0.18 1.22 16 10 H 0.10 1.56 7.46 -51.93 -0.39 1.18 16 11 N -0.81 -13.66 8.44 -5.65 -0.05 -13.71 16 12 C -0.10 -1.91 4.77 -26.74 -0.13 -2.03 16 13 C 0.03 0.81 4.86 -27.89 -0.14 0.67 16 14 C -0.52 -14.59 9.11 -34.44 -0.31 -14.91 16 15 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 18 Si 0.89 21.51 29.54 -169.99 -5.02 16.48 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 C 0.07 0.76 5.97 -3.07 -0.02 0.74 16 23 C 0.10 0.96 4.06 -24.90 -0.10 0.86 16 24 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 25 O -0.55 -5.25 13.40 -35.23 -0.47 -5.72 16 26 H 0.05 0.31 8.12 -51.93 -0.42 -0.11 16 27 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.08 1.00 8.04 -51.93 -0.42 0.58 16 31 H 0.35 5.98 8.58 -39.29 -0.34 5.64 16 32 H 0.33 4.91 9.06 -39.29 -0.36 4.56 16 33 H 0.05 1.00 6.66 -51.93 -0.35 0.65 16 34 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.04 0.97 7.75 -51.93 -0.40 0.57 16 36 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 38 H 0.08 0.90 7.77 -51.93 -0.40 0.50 16 39 H 0.09 1.03 6.76 -51.93 -0.35 0.68 16 40 H 0.39 2.09 9.12 45.56 0.42 2.51 16 LS Contribution 333.01 15.07 5.02 5.02 Total: -1.00 -33.86 333.01 -6.17 -40.03 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -5.49 Total: 7.89 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: -0.05 Total: -0.62 kcal Atomic # 7 Polarization: -48.56 SS G_CDS: 0.12 Total: -48.44 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: -0.75 Total: -20.36 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.86 -6.17 -40.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691600207.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.869 kcal (2) G-P(sol) polarization free energy of solvation -33.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds