Wall clock time and date at job start Mon Mar 30 2020 05:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 114.00181 * 2 1 4 4 H 1.09000 * 110.91657 * 26.09665 * 3 2 1 5 5 C 1.54918 * 111.00429 * 262.20116 * 3 2 1 6 6 N 1.47425 * 104.82827 * 204.91435 * 5 3 2 7 7 C 1.34778 * 125.64271 * 204.07868 * 6 5 3 8 8 O 1.21280 * 120.00070 * 0.03002 * 7 6 5 9 9 C 1.50696 * 119.99911 * 180.02562 * 7 6 5 10 10 H 1.09004 * 109.47017 * 319.99744 * 9 7 6 11 11 N 1.46906 * 109.47326 * 200.00075 * 9 7 6 12 12 C 1.53001 * 109.47642 * 79.99999 * 9 7 6 13 13 C 1.52991 * 109.47724 * 185.00230 * 12 9 7 14 14 C 1.50698 * 109.47625 * 179.97438 * 13 12 9 15 15 H 1.08000 * 119.99383 * 359.97438 * 14 13 12 16 16 C 1.37870 * 120.00501 * 180.02562 * 14 13 12 17 17 N 1.31519 * 120.00100 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 120.00321 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47224 * 89.99601 * 18 16 14 20 20 H 1.48494 * 109.46934 * 209.99764 * 18 16 14 21 21 H 1.48498 * 109.46766 * 329.99515 * 18 16 14 22 22 C 1.47015 * 108.70882 * 24.12597 * 6 5 3 23 23 C 1.54325 * 107.27065 * 358.94051 * 22 6 5 24 24 H 1.08993 * 110.72326 * 96.17079 * 23 22 6 25 25 O 1.42905 * 110.87431 * 219.37607 * 23 22 6 26 26 H 1.09000 * 109.47105 * 299.99915 * 1 2 3 27 27 H 1.08996 * 109.47474 * 60.00235 * 1 2 3 28 28 H 1.09004 * 109.46827 * 180.02562 * 1 2 3 29 29 H 1.08999 * 110.35942 * 323.74628 * 5 3 2 30 30 H 1.08996 * 110.36556 * 86.07461 * 5 3 2 31 31 H 1.00901 * 110.99557 * 299.99844 * 11 9 7 32 32 H 1.00898 * 110.99593 * 63.95461 * 11 9 7 33 33 H 1.09006 * 109.46764 * 305.00502 * 12 9 7 34 34 H 1.09001 * 109.46834 * 64.99262 * 12 9 7 35 35 H 1.09006 * 109.47222 * 299.99991 * 13 12 9 36 36 H 1.09005 * 109.47084 * 59.99345 * 13 12 9 37 37 H 0.96996 * 119.99990 * 179.97438 * 17 16 14 38 38 H 1.09000 * 109.88350 * 239.52260 * 22 6 5 39 39 H 1.08997 * 110.01690 * 118.42776 * 22 6 5 40 40 H 0.96698 * 113.99778 * 293.61074 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3332 2.0328 0.4479 5 6 2.4154 1.7329 -1.4329 6 7 3.4908 2.7229 -1.2414 7 6 3.8375 3.6856 -2.1186 8 8 3.2440 3.7890 -3.1712 9 6 4.9624 4.6334 -1.7916 10 1 4.9086 4.9118 -0.7391 11 7 4.8449 5.8386 -2.6234 12 6 6.3026 3.9500 -2.0705 13 6 7.4445 4.8642 -1.6221 14 6 8.7645 4.1909 -1.8962 15 1 8.7867 3.2088 -2.3450 16 6 9.9437 4.8280 -1.5732 17 7 9.9167 6.0237 -1.0262 18 14 11.5800 3.9936 -1.9137 19 1 12.0465 4.3562 -3.2760 20 1 12.5812 4.4403 -0.9123 21 1 11.4127 2.5208 -1.8234 22 6 4.1232 2.4855 0.0644 23 6 3.3824 1.3034 0.7242 24 1 3.9119 0.3678 0.5444 25 8 3.2147 1.5260 2.1258 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 2.7852 0.8749 -1.9943 30 1 1.5685 2.1873 -1.9469 31 1 4.8919 5.6068 -3.6043 32 1 3.9972 6.3430 -2.4112 33 1 6.3525 3.0101 -1.5208 34 1 6.3939 3.7515 -3.1384 35 1 7.3946 5.8042 -2.1718 36 1 7.3530 5.0627 -0.5542 37 1 10.7463 6.4718 -0.7986 38 1 4.0315 3.3749 0.6879 39 1 5.1753 2.2347 -0.0707 40 1 4.0430 1.5339 2.6246 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691600207.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:17 Heat of formation + Delta-G solvation = -159.629774 kcal Electronic energy + Delta-G solvation = -21579.810613 eV Core-core repulsion = 18200.302905 eV Total energy + Delta-G solvation = -3379.507709 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.58079 -39.85618 -37.88320 -36.88564 -36.54125 -34.82386 -31.98109 -31.53545 -29.58965 -28.24881 -27.39508 -25.67096 -24.01272 -22.36762 -22.00263 -20.50295 -18.85854 -18.72226 -18.28098 -17.58748 -17.12587 -16.78675 -16.46480 -16.34163 -16.14570 -15.90070 -15.31436 -15.07866 -14.52413 -14.42730 -14.11494 -13.95659 -13.68737 -13.57266 -13.38515 -13.16627 -12.80319 -12.53073 -12.42762 -12.26222 -11.88715 -11.77743 -11.61493 -11.35908 -11.17763 -11.02053 -10.79475 -10.48222 -9.86417 -9.69127 -8.12953 -6.23182 1.36324 1.43335 1.44369 1.54685 1.67091 2.45353 2.53490 3.08612 3.18404 3.20296 3.50154 3.62092 3.74796 3.84186 4.01298 4.09513 4.25017 4.28872 4.37450 4.49658 4.53276 4.59700 4.63998 4.75096 4.81115 4.83046 4.90414 5.06143 5.23706 5.57889 5.83949 5.98707 6.02708 6.05429 6.24426 6.30867 6.46990 6.76847 6.90364 6.95137 7.45061 8.98165 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.022448 B = 0.004130 C = 0.003757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.037830 B = 6777.806313 C = 7450.326678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.386 6.386 3 C 0.089 3.911 4 H 0.092 0.908 5 C 0.086 3.914 6 N -0.609 5.609 7 C 0.504 3.496 8 O -0.579 6.579 9 C 0.091 3.909 10 H 0.109 0.891 11 N -0.817 5.817 12 C -0.081 4.081 13 C 0.042 3.958 14 C -0.543 4.543 15 H 0.055 0.945 16 C 0.003 3.997 17 N -0.929 5.929 18 Si 0.958 3.042 19 H -0.278 1.278 20 H -0.282 1.282 21 H -0.263 1.263 22 C 0.064 3.936 23 C 0.106 3.894 24 H 0.094 0.906 25 O -0.563 6.563 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.105 0.895 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.346 0.654 32 H 0.347 0.653 33 H 0.067 0.933 34 H 0.042 0.958 35 H 0.005 0.995 36 H -0.003 1.003 37 H 0.262 0.738 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.487 -10.911 5.782 21.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.304 6.304 3 C 0.030 3.970 4 H 0.109 0.891 5 C -0.037 4.037 6 N -0.344 5.344 7 C 0.292 3.708 8 O -0.459 6.459 9 C -0.024 4.024 10 H 0.127 0.873 11 N -0.346 5.346 12 C -0.119 4.119 13 C 0.004 3.996 14 C -0.581 4.581 15 H 0.074 0.926 16 C -0.195 4.195 17 N -0.569 5.569 18 Si 0.783 3.217 19 H -0.204 1.204 20 H -0.207 1.207 21 H -0.187 1.187 22 C -0.059 4.059 23 C 0.045 3.955 24 H 0.112 0.888 25 O -0.372 6.372 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.123 0.877 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.160 0.840 32 H 0.160 0.840 33 H 0.086 0.914 34 H 0.060 0.940 35 H 0.024 0.976 36 H 0.015 0.985 37 H 0.071 0.929 38 H 0.111 0.889 39 H 0.107 0.893 40 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -17.508 -10.568 5.453 21.165 hybrid contribution 0.467 -0.308 -0.531 0.772 sum -17.041 -10.876 4.922 20.806 Atomic orbital electron populations 1.23064 0.78900 1.04391 1.00940 1.87883 1.21968 1.25896 1.94676 1.23103 0.94979 0.86146 0.92789 0.89056 1.22655 0.91036 0.92157 0.97860 1.48326 1.35347 1.31443 1.19317 1.22268 0.84989 0.80958 0.82627 1.90642 1.56415 1.73329 1.25516 1.21616 0.92083 0.88658 1.00086 0.87326 1.59004 1.44167 1.21237 1.10183 1.21395 0.91817 0.98529 1.00203 1.18807 0.91234 0.94591 0.94934 1.21710 0.92744 1.03237 1.40438 0.92635 1.25874 1.03026 0.95512 0.95049 1.70101 1.28214 1.14956 1.43628 0.85554 0.79119 0.79143 0.77849 1.20360 1.20738 1.18717 1.23051 0.98710 1.00345 0.83745 1.22717 0.94482 0.96473 0.81785 0.88815 1.86472 1.38030 1.95276 1.17399 0.92963 0.93172 0.87714 0.90421 0.90260 0.84022 0.83959 0.91424 0.93963 0.97649 0.98496 0.92924 0.88934 0.89270 0.74376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.85 113.37 1.23 1.53 16 2 O -0.39 -7.49 10.51 -148.98 -1.57 -9.06 16 3 C 0.09 1.71 3.27 31.99 0.10 1.81 16 4 H 0.09 1.69 7.83 -2.39 -0.02 1.67 16 5 C 0.09 1.95 6.64 86.86 0.58 2.53 16 6 N -0.61 -15.72 3.33 -811.80 -2.70 -18.42 16 7 C 0.50 16.11 7.09 87.66 0.62 16.73 16 8 O -0.58 -21.72 16.51 -3.03 -0.05 -21.77 16 9 C 0.09 3.05 2.56 44.17 0.11 3.16 16 10 H 0.11 3.38 7.46 -2.38 -0.02 3.36 16 11 N -0.82 -27.76 8.44 -171.79 -1.45 -29.21 16 12 C -0.08 -3.24 4.77 30.59 0.15 -3.09 16 13 C 0.04 2.12 4.86 29.84 0.15 2.26 16 14 C -0.54 -30.34 9.11 25.60 0.23 -30.10 16 15 H 0.06 2.99 7.74 -2.91 -0.02 2.97 16 16 C 0.00 0.19 5.46 84.65 0.46 0.65 16 17 N -0.93 -55.87 13.29 21.45 0.28 -55.58 16 18 Si 0.96 43.82 29.54 68.60 2.03 45.84 16 19 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 20 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 21 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 22 C 0.06 1.33 5.97 86.73 0.52 1.84 16 23 C 0.11 1.88 4.06 31.78 0.13 2.01 16 24 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 25 O -0.56 -9.28 13.40 -148.98 -2.00 -11.28 16 26 H 0.05 0.62 8.12 -2.39 -0.02 0.60 16 27 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.10 1.03 8.14 -2.38 -0.02 1.01 16 29 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.08 1.85 8.04 -2.39 -0.02 1.83 16 31 H 0.35 12.02 8.58 -89.69 -0.77 11.25 16 32 H 0.35 10.10 9.06 -89.70 -0.81 9.29 16 33 H 0.07 2.47 6.66 -2.38 -0.02 2.46 16 34 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.01 0.29 7.75 -2.38 -0.02 0.27 16 36 H 0.00 -0.18 8.14 -2.38 -0.02 -0.20 16 37 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 38 H 0.09 1.79 7.77 -2.39 -0.02 1.77 16 39 H 0.09 1.88 6.76 -2.39 -0.02 1.86 16 40 H 0.40 3.37 9.12 -74.06 -0.68 2.69 16 Total: -1.00 -71.55 333.01 -2.36 -73.91 By element: Atomic # 1 Polarization: 27.41 SS G_CDS: -1.19 Total: 26.22 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: 4.28 Total: -0.66 kcal Atomic # 7 Polarization: -99.34 SS G_CDS: -3.87 Total: -103.21 kcal Atomic # 8 Polarization: -38.50 SS G_CDS: -3.61 Total: -42.11 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Total: -71.55 -2.36 -73.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691600207.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.715 kcal (2) G-P(sol) polarization free energy of solvation -71.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds