Wall clock time and date at job start Mon Mar 30 2020 04:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47127 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47131 * 180.02562 * 11 10 9 13 13 H 1.08997 * 109.47395 * 54.99425 * 12 11 10 14 14 N 1.46907 * 109.47034 * 294.99910 * 12 11 10 15 15 C 1.50702 * 109.47417 * 175.00038 * 12 11 10 16 16 O 1.21276 * 119.99842 * 99.99444 * 15 12 11 17 17 N 1.34774 * 119.99654 * 280.00188 * 15 12 11 18 18 C 1.47020 * 125.64896 * 359.68366 * 17 15 12 19 19 C 1.54323 * 107.27790 * 180.97143 * 18 17 15 20 20 H 1.08993 * 111.07617 * 264.04679 * 19 18 17 21 21 O 1.42896 * 110.59317 * 140.78550 * 19 18 17 22 22 C 1.55164 * 102.85883 * 22.52837 * 19 18 17 23 23 H 1.09002 * 111.00260 * 82.37608 * 22 19 18 24 24 O 1.42899 * 111.00292 * 206.22922 * 22 19 18 25 25 C 1.47423 * 125.64679 * 179.97438 * 17 15 12 26 26 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 28 28 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 29 29 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 30 30 H 1.09001 * 109.46801 * 59.99558 * 10 9 7 31 31 H 1.09001 * 109.46832 * 299.99679 * 11 10 9 32 32 H 1.09004 * 109.47261 * 59.99697 * 11 10 9 33 33 H 1.00899 * 110.99745 * 176.05118 * 14 12 11 34 34 H 1.00898 * 110.99789 * 300.00014 * 14 12 11 35 35 H 1.08998 * 109.88415 * 300.51765 * 18 17 15 36 36 H 1.09001 * 109.88061 * 61.68477 * 18 17 15 37 37 H 0.96700 * 114.00215 * 66.64927 * 21 19 18 38 38 H 0.96701 * 114.00201 * 173.64854 * 24 22 19 39 39 H 1.08999 * 110.36698 * 274.66856 * 25 17 15 40 40 H 1.09002 * 110.37072 * 36.99438 * 25 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4805 -4.9871 0.0012 12 6 2.4747 -6.1499 0.0018 13 1 3.1589 -6.0426 0.8435 14 7 3.2379 -6.1424 -1.2534 15 6 1.7254 -7.4516 0.1263 16 8 1.5132 -8.1256 -0.8593 17 7 1.2911 -7.8663 1.3328 18 6 1.4843 -7.1540 2.6044 19 6 0.8429 -8.0141 3.7136 20 1 -0.1714 -7.6799 3.9315 21 8 1.6459 -7.9907 4.8953 22 6 0.8304 -9.4332 3.0864 23 1 1.7977 -9.9214 3.2051 24 8 -0.2155 -10.2308 3.6449 25 6 0.5489 -9.1123 1.5970 26 1 -0.4850 -0.8401 -0.0004 27 1 0.6242 -2.5567 0.8904 28 1 0.6248 -2.5571 -0.8896 29 1 2.8720 -3.6043 -0.8895 30 1 2.8721 -3.6042 0.8905 31 1 0.8542 -5.0446 0.8914 32 1 0.8534 -5.0451 -0.8886 33 1 3.9455 -6.8616 -1.2507 34 1 2.6256 -6.2406 -2.0494 35 1 2.5490 -7.0271 2.8001 36 1 0.9944 -6.1812 2.5624 37 1 1.6869 -7.1259 5.3260 38 1 -0.3253 -11.0911 3.2171 39 1 -0.5184 -8.9594 1.4369 40 1 0.9176 -9.9160 0.9597 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691604333.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:46 Heat of formation + Delta-G solvation = -147.518694 kcal Electronic energy + Delta-G solvation = -21356.552477 eV Core-core repulsion = 17977.569944 eV Total energy + Delta-G solvation = -3378.982533 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.69579 -38.86238 -36.55876 -35.92293 -35.65809 -33.66752 -31.36624 -30.42572 -28.87470 -27.61010 -25.17212 -23.61188 -22.15837 -21.49407 -20.34327 -19.52970 -18.52939 -17.71208 -16.98814 -16.73126 -16.43282 -15.98190 -15.36520 -15.04526 -14.79988 -14.24748 -14.06188 -13.69860 -13.44508 -13.25692 -13.16978 -12.94832 -12.76038 -12.62013 -11.99887 -11.36909 -11.07367 -11.06502 -11.02608 -10.75546 -10.69468 -10.67125 -10.26476 -10.09767 -9.78784 -9.59584 -9.02486 -8.78683 -8.45401 -8.28710 -6.32310 -4.00708 2.36717 2.53113 3.39268 3.46051 3.48411 3.66917 3.72489 3.88155 4.38588 4.41712 4.54681 4.57920 4.63526 4.73956 4.91731 5.01357 5.16711 5.22379 5.30046 5.35224 5.44944 5.47402 5.74048 5.83638 5.97981 6.27177 6.63811 6.80239 6.94514 7.03713 7.08451 7.13752 7.18695 7.39280 7.48627 7.60529 7.87061 8.27690 8.51374 8.93103 9.71513 11.08265 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.022325 B = 0.003736 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.876876 B = 7493.359906 C = 8215.283907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.013 3.987 3 Si 1.068 2.932 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.599 4.599 8 H 0.049 0.951 9 C 0.006 3.994 10 C -0.092 4.092 11 C -0.105 4.105 12 C 0.082 3.918 13 H 0.101 0.899 14 N -0.810 5.810 15 C 0.500 3.500 16 O -0.545 6.545 17 N -0.612 5.612 18 C 0.067 3.933 19 C 0.102 3.898 20 H 0.088 0.912 21 O -0.553 6.553 22 C 0.099 3.901 23 H 0.084 0.916 24 O -0.551 6.551 25 C 0.073 3.927 26 H 0.267 0.733 27 H 0.003 0.997 28 H 0.005 0.995 29 H 0.066 0.934 30 H 0.046 0.954 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.339 0.661 34 H 0.351 0.649 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.388 0.612 38 H 0.385 0.615 39 H 0.080 0.920 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.774 -19.834 7.263 21.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.191 4.191 3 Si 0.897 3.103 4 H -0.209 1.209 5 H -0.214 1.214 6 H -0.215 1.215 7 C -0.637 4.637 8 H 0.067 0.933 9 C -0.031 4.031 10 C -0.130 4.130 11 C -0.143 4.143 12 C -0.033 4.033 13 H 0.119 0.881 14 N -0.339 5.339 15 C 0.288 3.712 16 O -0.422 6.422 17 N -0.349 5.349 18 C -0.057 4.057 19 C 0.042 3.958 20 H 0.106 0.894 21 O -0.359 6.359 22 C 0.039 3.961 23 H 0.102 0.898 24 O -0.356 6.356 25 C -0.051 4.051 26 H 0.078 0.922 27 H 0.021 0.979 28 H 0.023 0.977 29 H 0.084 0.916 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.152 0.848 34 H 0.165 0.835 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.236 0.764 38 H 0.233 0.767 39 H 0.098 0.902 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.744 -17.871 7.090 19.421 hybrid contribution -0.260 -2.620 -0.324 2.653 sum 2.483 -20.491 6.766 21.722 Atomic orbital electron populations 1.70786 1.06904 1.30492 1.47026 1.25851 0.96566 1.02745 0.93901 0.83556 0.74880 0.75385 0.76510 1.20851 1.21443 1.21486 1.22072 0.94325 0.92055 1.55262 0.93303 1.19249 0.94719 0.93465 0.95623 1.21409 0.98480 0.91631 1.01465 1.21673 0.96628 0.94114 1.01869 1.21740 0.95736 0.90440 0.95417 0.88131 1.59057 1.17306 1.54293 1.03218 1.22400 0.78857 0.88943 0.80985 1.90683 1.57934 1.57529 1.36062 1.48339 1.56780 1.22603 1.07205 1.22933 1.02574 0.97035 0.83149 1.22715 0.94774 0.93723 0.84616 0.89425 1.86525 1.71812 1.37566 1.39967 1.22887 0.91557 0.91388 0.90273 0.89819 1.86537 1.55077 1.32775 1.61206 1.22947 0.97921 0.88294 0.95907 0.92217 0.97922 0.97684 0.91566 0.93490 0.92057 0.91889 0.84849 0.83491 0.89600 0.89451 0.76367 0.76732 0.90225 0.89682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.33 13.65 55.43 0.76 -27.58 16 2 C 0.01 0.37 5.46 -17.82 -0.10 0.27 16 3 Si 1.07 25.49 29.90 -169.99 -5.08 20.40 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 6 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.60 -17.22 9.11 -34.44 -0.31 -17.54 16 8 H 0.05 1.38 7.74 -52.48 -0.41 0.98 16 9 C 0.01 0.16 4.28 -27.88 -0.12 0.04 16 10 C -0.09 -1.86 5.04 -26.73 -0.13 -2.00 16 11 C -0.10 -1.71 4.83 -26.73 -0.13 -1.84 16 12 C 0.08 1.13 2.57 -68.86 -0.18 0.95 16 13 H 0.10 1.24 7.46 -51.93 -0.39 0.86 16 14 N -0.81 -11.07 8.44 -5.65 -0.05 -11.11 16 15 C 0.50 6.94 7.09 -10.99 -0.08 6.86 16 16 O -0.55 -9.10 16.51 5.56 0.09 -9.00 16 17 N -0.61 -6.92 3.33 -170.51 -0.57 -7.49 16 18 C 0.07 0.61 5.96 -3.07 -0.02 0.59 16 19 C 0.10 0.88 4.07 -24.89 -0.10 0.78 16 20 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 21 O -0.55 -4.73 13.38 -35.23 -0.47 -5.20 16 22 C 0.10 0.85 4.15 -24.57 -0.10 0.75 16 23 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 24 O -0.55 -4.56 13.47 -35.23 -0.47 -5.03 16 25 C 0.07 0.70 6.64 -2.52 -0.02 0.68 16 26 H 0.27 8.24 7.22 -40.82 -0.29 7.95 16 27 H 0.00 0.07 8.01 -51.93 -0.42 -0.35 16 28 H 0.00 0.13 8.01 -51.93 -0.42 -0.28 16 29 H 0.07 1.40 7.75 -51.93 -0.40 1.00 16 30 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.06 0.94 6.68 -51.93 -0.35 0.59 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.34 4.00 9.06 -39.29 -0.36 3.64 16 34 H 0.35 4.97 8.58 -39.29 -0.34 4.63 16 35 H 0.09 0.73 7.77 -51.93 -0.40 0.32 16 36 H 0.09 0.81 6.77 -51.93 -0.35 0.46 16 37 H 0.39 1.72 9.12 45.56 0.42 2.14 16 38 H 0.38 1.44 9.11 45.56 0.42 1.85 16 39 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.08 0.81 8.04 -51.93 -0.42 0.39 16 LS Contribution 331.23 15.07 4.99 4.99 Total: -1.00 -36.09 331.23 -6.70 -42.79 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -4.61 Total: 7.67 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: -1.29 Total: -10.44 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: 0.14 Total: -46.18 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -0.85 Total: -19.23 kcal Atomic # 14 Polarization: 25.49 SS G_CDS: -5.08 Total: 20.40 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -36.09 -6.70 -42.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691604333.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.728 kcal (2) G-P(sol) polarization free energy of solvation -36.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds