Wall clock time and date at job start Mon Mar 30 2020 04:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47127 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47131 * 180.02562 * 11 10 9 13 13 H 1.08997 * 109.47395 * 54.99425 * 12 11 10 14 14 N 1.46907 * 109.47034 * 294.99910 * 12 11 10 15 15 C 1.50702 * 109.47417 * 175.00038 * 12 11 10 16 16 O 1.21276 * 119.99842 * 99.99444 * 15 12 11 17 17 N 1.34774 * 119.99654 * 280.00188 * 15 12 11 18 18 C 1.47020 * 125.64896 * 359.68366 * 17 15 12 19 19 C 1.54323 * 107.27790 * 180.97143 * 18 17 15 20 20 H 1.08993 * 111.07617 * 264.04679 * 19 18 17 21 21 O 1.42896 * 110.59317 * 140.78550 * 19 18 17 22 22 C 1.55164 * 102.85883 * 22.52837 * 19 18 17 23 23 H 1.09002 * 111.00260 * 82.37608 * 22 19 18 24 24 O 1.42899 * 111.00292 * 206.22922 * 22 19 18 25 25 C 1.47423 * 125.64679 * 179.97438 * 17 15 12 26 26 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 28 28 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 29 29 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 30 30 H 1.09001 * 109.46801 * 59.99558 * 10 9 7 31 31 H 1.09001 * 109.46832 * 299.99679 * 11 10 9 32 32 H 1.09004 * 109.47261 * 59.99697 * 11 10 9 33 33 H 1.00899 * 110.99745 * 176.05118 * 14 12 11 34 34 H 1.00898 * 110.99789 * 300.00014 * 14 12 11 35 35 H 1.08998 * 109.88415 * 300.51765 * 18 17 15 36 36 H 1.09001 * 109.88061 * 61.68477 * 18 17 15 37 37 H 0.96700 * 114.00215 * 66.64927 * 21 19 18 38 38 H 0.96701 * 114.00201 * 173.64854 * 24 22 19 39 39 H 1.08999 * 110.36698 * 274.66856 * 25 17 15 40 40 H 1.09002 * 110.37072 * 36.99438 * 25 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4805 -4.9871 0.0012 12 6 2.4747 -6.1499 0.0018 13 1 3.1589 -6.0426 0.8435 14 7 3.2379 -6.1424 -1.2534 15 6 1.7254 -7.4516 0.1263 16 8 1.5132 -8.1256 -0.8593 17 7 1.2911 -7.8663 1.3328 18 6 1.4843 -7.1540 2.6044 19 6 0.8429 -8.0141 3.7136 20 1 -0.1714 -7.6799 3.9315 21 8 1.6459 -7.9907 4.8953 22 6 0.8304 -9.4332 3.0864 23 1 1.7977 -9.9214 3.2051 24 8 -0.2155 -10.2308 3.6449 25 6 0.5489 -9.1123 1.5970 26 1 -0.4850 -0.8401 -0.0004 27 1 0.6242 -2.5567 0.8904 28 1 0.6248 -2.5571 -0.8896 29 1 2.8720 -3.6043 -0.8895 30 1 2.8721 -3.6042 0.8905 31 1 0.8542 -5.0446 0.8914 32 1 0.8534 -5.0451 -0.8886 33 1 3.9455 -6.8616 -1.2507 34 1 2.6256 -6.2406 -2.0494 35 1 2.5490 -7.0271 2.8001 36 1 0.9944 -6.1812 2.5624 37 1 1.6869 -7.1259 5.3260 38 1 -0.3253 -11.0911 3.2171 39 1 -0.5184 -8.9594 1.4369 40 1 0.9176 -9.9160 0.9597 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691604333.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:46 Heat of formation + Delta-G solvation = -180.018750 kcal Electronic energy + Delta-G solvation = -21357.961785 eV Core-core repulsion = 17977.569944 eV Total energy + Delta-G solvation = -3380.391841 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.63229 -39.73118 -37.38106 -37.14698 -36.48535 -35.55316 -33.09143 -31.27835 -29.71901 -29.09048 -26.60255 -25.01266 -23.58563 -22.24781 -21.93799 -20.52071 -19.18468 -18.88120 -18.62672 -17.72986 -17.38698 -17.12209 -16.35417 -15.91620 -15.78614 -15.62438 -15.46252 -15.02876 -14.78886 -14.60109 -14.32141 -13.90845 -13.80187 -13.56656 -13.33370 -13.02321 -12.66351 -12.55994 -12.43459 -11.93898 -11.83794 -11.67044 -11.54803 -11.44217 -11.34852 -11.16723 -10.63110 -10.50967 -9.93138 -9.82259 -8.65593 -6.35615 1.28755 1.54740 1.63338 1.64120 1.82508 2.59683 2.82288 2.99824 3.17262 3.19057 3.37548 3.60540 3.78320 3.81826 3.91788 4.00337 4.03318 4.25360 4.36056 4.42686 4.49507 4.56158 4.63777 4.76892 4.81835 4.92707 5.02160 5.04649 5.12013 5.54085 5.64423 5.90559 6.06256 6.17465 6.23174 6.36558 6.62265 6.67882 6.73444 6.83148 7.46444 8.75169 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.022325 B = 0.003736 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.876876 B = 7493.359906 C = 8215.283907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.042 4.042 3 Si 1.117 2.883 4 H -0.285 1.285 5 H -0.271 1.271 6 H -0.266 1.266 7 C -0.617 4.617 8 H 0.051 0.949 9 C 0.006 3.994 10 C -0.076 4.076 11 C -0.094 4.094 12 C 0.092 3.908 13 H 0.121 0.879 14 N -0.817 5.817 15 C 0.500 3.500 16 O -0.578 6.578 17 N -0.610 5.610 18 C 0.065 3.935 19 C 0.105 3.895 20 H 0.089 0.911 21 O -0.564 6.564 22 C 0.107 3.893 23 H 0.087 0.913 24 O -0.563 6.563 25 C 0.073 3.927 26 H 0.254 0.746 27 H -0.009 1.009 28 H -0.020 1.020 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.046 0.954 33 H 0.351 0.649 34 H 0.347 0.653 35 H 0.098 0.902 36 H 0.088 0.912 37 H 0.404 0.596 38 H 0.403 0.597 39 H 0.078 0.922 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.070 -20.193 8.402 22.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.238 4.238 3 Si 0.938 3.062 4 H -0.211 1.211 5 H -0.196 1.196 6 H -0.191 1.191 7 C -0.654 4.654 8 H 0.070 0.930 9 C -0.031 4.031 10 C -0.114 4.114 11 C -0.132 4.132 12 C -0.024 4.024 13 H 0.138 0.862 14 N -0.346 5.346 15 C 0.288 3.712 16 O -0.458 6.458 17 N -0.345 5.345 18 C -0.058 4.058 19 C 0.045 3.955 20 H 0.106 0.894 21 O -0.373 6.373 22 C 0.047 3.953 23 H 0.105 0.895 24 O -0.371 6.371 25 C -0.050 4.050 26 H 0.063 0.937 27 H 0.009 0.991 28 H -0.002 1.002 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.065 0.935 33 H 0.165 0.835 34 H 0.160 0.840 35 H 0.117 0.883 36 H 0.106 0.894 37 H 0.256 0.744 38 H 0.254 0.746 39 H 0.096 0.904 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.048 -18.269 8.270 20.458 hybrid contribution -0.700 -2.560 -0.636 2.729 sum 3.348 -20.830 7.634 22.436 Atomic orbital electron populations 1.70924 1.08006 1.29749 1.49161 1.27446 0.96614 1.06939 0.92839 0.82943 0.74118 0.71043 0.78093 1.21051 1.19631 1.19052 1.22536 0.94775 0.93521 1.54602 0.93035 1.19226 0.95244 0.94887 0.93771 1.21163 0.97275 0.91525 1.01426 1.21466 0.96766 0.93290 1.01726 1.21582 0.95316 0.89293 0.96183 0.86154 1.59062 1.17534 1.54942 1.03071 1.22264 0.78845 0.88793 0.81296 1.90669 1.59317 1.58487 1.37330 1.48355 1.55742 1.23203 1.07221 1.23076 1.03505 0.96948 0.82257 1.22654 0.94752 0.93614 0.84524 0.89358 1.86494 1.71712 1.39217 1.39842 1.22771 0.91735 0.91562 0.89206 0.89539 1.86501 1.54941 1.34077 1.61606 1.23033 0.97559 0.87550 0.96891 0.93663 0.99100 1.00160 0.92511 0.92431 0.90936 0.93474 0.83549 0.83961 0.88349 0.89373 0.74428 0.74583 0.90394 0.89664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.00 13.65 21.45 0.29 -58.70 16 2 C -0.04 -2.43 5.46 84.65 0.46 -1.97 16 3 Si 1.12 50.39 29.90 68.60 2.05 52.44 16 4 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 5 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 6 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 7 C -0.62 -35.46 9.11 25.60 0.23 -35.22 16 8 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 9 C 0.01 0.30 4.28 29.85 0.13 0.43 16 10 C -0.08 -3.03 5.04 30.60 0.15 -2.88 16 11 C -0.09 -3.00 4.83 30.59 0.15 -2.85 16 12 C 0.09 2.38 2.57 44.17 0.11 2.49 16 13 H 0.12 2.65 7.46 -2.39 -0.02 2.63 16 14 N -0.82 -21.43 8.44 -171.79 -1.45 -22.88 16 15 C 0.50 13.29 7.09 87.66 0.62 13.91 16 16 O -0.58 -18.99 16.51 -3.02 -0.05 -19.04 16 17 N -0.61 -12.84 3.33 -811.76 -2.70 -15.54 16 18 C 0.07 1.06 5.96 86.73 0.52 1.57 16 19 C 0.10 1.60 4.07 31.78 0.13 1.73 16 20 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 21 O -0.56 -8.36 13.38 -148.98 -1.99 -10.35 16 22 C 0.11 1.64 4.15 32.00 0.13 1.77 16 23 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 24 O -0.56 -8.27 13.47 -148.98 -2.01 -10.27 16 25 C 0.07 1.30 6.64 86.86 0.58 1.87 16 26 H 0.25 16.12 7.22 -92.71 -0.67 15.45 16 27 H -0.01 -0.50 8.01 -2.39 -0.02 -0.52 16 28 H -0.02 -1.12 8.01 -2.39 -0.02 -1.14 16 29 H 0.06 2.36 7.75 -2.39 -0.02 2.35 16 30 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.07 2.14 6.68 -2.39 -0.02 2.12 16 32 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 33 H 0.35 7.78 9.06 -89.69 -0.81 6.96 16 34 H 0.35 9.70 8.58 -89.70 -0.77 8.93 16 35 H 0.10 1.39 7.77 -2.39 -0.02 1.37 16 36 H 0.09 1.45 6.77 -2.39 -0.02 1.43 16 37 H 0.40 2.66 9.12 -74.06 -0.68 1.99 16 38 H 0.40 2.27 9.11 -74.06 -0.67 1.60 16 39 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.08 1.53 8.04 -2.39 -0.02 1.51 16 Total: -1.00 -76.90 331.23 -4.39 -81.29 By element: Atomic # 1 Polarization: 23.95 SS G_CDS: -1.75 Total: 22.21 kcal Atomic # 6 Polarization: -22.37 SS G_CDS: 3.22 Total: -19.15 kcal Atomic # 7 Polarization: -93.27 SS G_CDS: -3.86 Total: -97.13 kcal Atomic # 8 Polarization: -35.61 SS G_CDS: -4.05 Total: -39.66 kcal Atomic # 14 Polarization: 50.39 SS G_CDS: 2.05 Total: 52.44 kcal Total: -76.90 -4.39 -81.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691604333.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.731 kcal (2) G-P(sol) polarization free energy of solvation -76.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds