Wall clock time and date at job start Mon Mar 30 2020 04:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48498 * 109.47171 * 270.00567 * 3 2 1 5 5 H 1.48500 * 109.46632 * 30.00818 * 3 2 1 6 6 H 1.48494 * 109.47053 * 150.00254 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46886 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46886 * 180.02562 * 11 10 9 13 13 H 1.09000 * 109.47630 * 54.99890 * 12 11 10 14 14 N 1.46901 * 109.47143 * 294.99246 * 12 11 10 15 15 C 1.50708 * 109.46955 * 174.99802 * 12 11 10 16 16 O 1.21275 * 120.00253 * 99.99601 * 15 12 11 17 17 N 1.34778 * 119.99655 * 279.99537 * 15 12 11 18 18 C 1.47425 * 125.64944 * 359.69632 * 17 15 12 19 19 C 1.54694 * 104.94019 * 204.06951 * 18 17 15 20 20 H 1.08998 * 110.84911 * 81.33310 * 19 18 17 21 21 O 1.42898 * 111.10342 * 205.10477 * 19 18 17 22 22 C 1.55159 * 101.67597 * 323.27676 * 19 18 17 23 23 H 1.09000 * 110.86980 * 276.89761 * 22 19 18 24 24 O 1.42900 * 110.71768 * 153.69935 * 22 19 18 25 25 C 1.47024 * 125.64833 * 179.97438 * 17 15 12 26 26 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 28 28 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 29 29 H 1.09001 * 109.47194 * 299.99742 * 10 9 7 30 30 H 1.08992 * 109.47399 * 59.99914 * 10 9 7 31 31 H 1.09001 * 109.47109 * 299.99380 * 11 10 9 32 32 H 1.09002 * 109.47508 * 59.99571 * 11 10 9 33 33 H 1.00902 * 111.00150 * 300.00341 * 14 12 11 34 34 H 1.00894 * 110.99462 * 63.95653 * 14 12 11 35 35 H 1.09002 * 110.36682 * 322.99734 * 18 17 15 36 36 H 1.09002 * 110.36782 * 85.32838 * 18 17 15 37 37 H 0.96693 * 114.00044 * 292.37309 * 21 19 18 38 38 H 0.96702 * 114.00343 * 185.02622 * 24 22 19 39 39 H 1.09000 * 109.88479 * 298.32982 * 25 17 15 40 40 H 1.09006 * 109.87733 * 59.33265 * 25 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 6 2.4747 -6.1500 -0.0005 13 1 3.1583 -6.0432 0.8417 14 7 3.2386 -6.1418 -1.2553 15 6 1.7252 -7.4516 0.1227 16 8 1.5135 -8.1252 -0.8633 17 7 1.2902 -7.8671 1.3288 18 6 1.4830 -7.1535 2.6043 19 6 1.3901 -8.2492 3.6924 20 1 2.3371 -8.7800 3.7903 21 8 0.9839 -7.6964 4.9459 22 6 0.2904 -9.1766 3.1109 23 1 -0.7033 -8.7974 3.3494 24 8 0.4489 -10.5125 3.5930 25 6 0.5497 -9.1099 1.5912 26 1 -0.4850 0.8400 0.0004 27 1 0.6241 -2.5568 -0.8903 28 1 0.6247 -2.5571 0.8897 29 1 2.8720 -3.6043 -0.8905 30 1 2.8720 -3.6043 0.8894 31 1 0.8535 -5.0451 0.8886 32 1 0.8539 -5.0446 -0.8913 33 1 2.6268 -6.2396 -2.0517 34 1 3.8003 -5.3071 -1.3311 35 1 2.4631 -6.6769 2.6280 36 1 0.6963 -6.4127 2.7473 37 1 1.6392 -7.1099 5.3479 38 1 -0.1656 -11.1478 3.2005 39 1 -0.3983 -9.0972 1.0534 40 1 1.1430 -9.9683 1.2760 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691604335.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:49 Heat of formation + Delta-G solvation = -142.800846 kcal Electronic energy + Delta-G solvation = -21326.831132 eV Core-core repulsion = 17948.053181 eV Total energy + Delta-G solvation = -3378.777952 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.54935 -38.70946 -36.49077 -36.07808 -35.52911 -33.40432 -31.29449 -30.34348 -28.82400 -27.71856 -25.51610 -23.72261 -22.22397 -21.36702 -20.26623 -19.36893 -18.44623 -17.72250 -16.94456 -16.37975 -16.26836 -15.58658 -15.17703 -14.71817 -14.63509 -14.52072 -14.07791 -13.96787 -13.83479 -13.11353 -13.02102 -12.82980 -12.50140 -12.44882 -12.00967 -11.86494 -11.27385 -10.99462 -10.86403 -10.78561 -10.67434 -10.61398 -10.59849 -9.87243 -9.80666 -9.43862 -9.18396 -8.90142 -8.54390 -8.41367 -6.06389 -4.09665 2.59296 2.60026 3.27472 3.34114 3.36745 3.45970 3.79033 3.98460 4.39875 4.49177 4.56542 4.64440 4.75134 4.83743 4.97551 5.08119 5.21999 5.28959 5.30042 5.37331 5.45937 5.57622 5.70894 5.85775 5.99109 6.19040 6.50934 6.67127 6.96446 7.05840 7.16204 7.22563 7.31472 7.54371 7.58314 7.70567 7.92257 8.09286 8.33943 8.97411 9.55121 11.04772 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.022616 B = 0.003735 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.775229 B = 7494.602003 C = 8266.889466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.108 4.108 11 C -0.147 4.147 12 C 0.080 3.920 13 H 0.099 0.901 14 N -0.830 5.830 15 C 0.542 3.458 16 O -0.529 6.529 17 N -0.616 5.616 18 C 0.068 3.932 19 C 0.100 3.900 20 H 0.084 0.916 21 O -0.551 6.551 22 C 0.100 3.900 23 H 0.087 0.913 24 O -0.553 6.553 25 C 0.079 3.921 26 H 0.261 0.739 27 H 0.015 0.985 28 H 0.015 0.985 29 H 0.048 0.952 30 H 0.051 0.949 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.350 0.650 34 H 0.353 0.647 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.387 0.613 38 H 0.384 0.616 39 H 0.076 0.924 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.159 -17.538 7.263 19.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.146 4.146 11 C -0.187 4.187 12 C -0.035 4.035 13 H 0.117 0.883 14 N -0.363 5.363 15 C 0.331 3.669 16 O -0.404 6.404 17 N -0.354 5.354 18 C -0.056 4.056 19 C 0.040 3.960 20 H 0.102 0.898 21 O -0.356 6.356 22 C 0.041 3.959 23 H 0.104 0.896 24 O -0.358 6.358 25 C -0.045 4.045 26 H 0.071 0.929 27 H 0.033 0.967 28 H 0.034 0.966 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.163 0.837 34 H 0.168 0.832 35 H 0.108 0.892 36 H 0.106 0.894 37 H 0.235 0.765 38 H 0.232 0.768 39 H 0.094 0.906 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.216 -18.497 7.153 19.955 hybrid contribution -0.162 1.983 -0.426 2.035 sum 2.054 -16.514 6.727 17.949 Atomic orbital electron populations 1.69961 1.06092 1.26695 1.50646 1.25033 0.94844 0.99323 0.95230 0.86593 0.79832 0.83427 0.78152 1.20639 1.21194 1.19847 1.21234 0.93000 0.91044 1.50865 0.92675 1.19079 0.93910 0.91267 0.97237 1.21650 0.99133 0.93403 1.00371 1.22411 0.98344 0.95044 1.02868 1.21414 0.95435 0.90949 0.95717 0.88330 1.58692 1.28220 1.46145 1.03244 1.20520 0.78279 0.87209 0.80886 1.90672 1.56772 1.56914 1.36036 1.48162 1.57430 1.22787 1.07030 1.23083 1.03765 0.95875 0.82845 1.22782 0.97490 0.92224 0.83501 0.89787 1.86522 1.47605 1.67120 1.34341 1.22746 0.99194 0.83376 0.90627 0.89566 1.86545 1.62900 1.17841 1.68548 1.22657 0.97676 0.88581 0.95563 0.92940 0.96701 0.96619 0.93285 0.93050 0.91598 0.91679 0.83655 0.83186 0.89218 0.89410 0.76454 0.76773 0.90585 0.90202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.50 13.29 55.43 0.74 -25.77 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.52 -14.37 9.11 -34.44 -0.31 -14.68 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 10 C -0.11 -2.01 4.92 -26.73 -0.13 -2.14 16 11 C -0.15 -2.31 4.83 -26.73 -0.13 -2.44 16 12 C 0.08 1.11 2.62 -68.86 -0.18 0.93 16 13 H 0.10 1.22 6.91 -51.93 -0.36 0.86 16 14 N -0.83 -11.64 8.94 -5.65 -0.05 -11.69 16 15 C 0.54 8.03 7.10 -10.98 -0.08 7.95 16 16 O -0.53 -9.54 16.58 5.56 0.09 -9.45 16 17 N -0.62 -7.32 3.33 -170.65 -0.57 -7.89 16 18 C 0.07 0.64 5.97 -2.65 -0.02 0.63 16 19 C 0.10 0.89 4.14 -24.70 -0.10 0.78 16 20 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 21 O -0.55 -4.87 13.47 -35.23 -0.47 -5.34 16 22 C 0.10 0.89 4.07 -24.90 -0.10 0.79 16 23 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 24 O -0.55 -4.74 13.39 -35.23 -0.47 -5.21 16 25 C 0.08 0.79 6.64 -3.07 -0.02 0.77 16 26 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 27 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.89 6.87 -51.93 -0.36 0.53 16 30 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.07 1.01 7.42 -51.93 -0.39 0.63 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.35 5.07 8.58 -39.29 -0.34 4.74 16 34 H 0.35 4.57 7.55 -39.29 -0.30 4.28 16 35 H 0.09 0.73 6.92 -51.93 -0.36 0.37 16 36 H 0.09 0.87 7.87 -51.93 -0.41 0.46 16 37 H 0.39 1.76 9.12 45.56 0.42 2.17 16 38 H 0.38 1.56 9.11 45.56 0.42 1.98 16 39 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.08 0.83 8.06 -51.93 -0.42 0.41 16 LS Contribution 331.15 15.07 4.99 4.99 Total: -1.00 -34.96 331.15 -6.67 -41.63 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -4.59 Total: 8.02 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: -1.31 Total: -5.50 kcal Atomic # 7 Polarization: -45.46 SS G_CDS: 0.12 Total: -45.34 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -0.85 Total: -20.01 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.96 -6.67 -41.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691604335.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.171 kcal (2) G-P(sol) polarization free energy of solvation -34.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds