Wall clock time and date at job start Mon Mar 30 2020 04:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48498 * 109.47171 * 270.00567 * 3 2 1 5 5 H 1.48500 * 109.46632 * 30.00818 * 3 2 1 6 6 H 1.48494 * 109.47053 * 150.00254 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46886 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46886 * 180.02562 * 11 10 9 13 13 H 1.09000 * 109.47630 * 54.99890 * 12 11 10 14 14 N 1.46901 * 109.47143 * 294.99246 * 12 11 10 15 15 C 1.50708 * 109.46955 * 174.99802 * 12 11 10 16 16 O 1.21275 * 120.00253 * 99.99601 * 15 12 11 17 17 N 1.34778 * 119.99655 * 279.99537 * 15 12 11 18 18 C 1.47425 * 125.64944 * 359.69632 * 17 15 12 19 19 C 1.54694 * 104.94019 * 204.06951 * 18 17 15 20 20 H 1.08998 * 110.84911 * 81.33310 * 19 18 17 21 21 O 1.42898 * 111.10342 * 205.10477 * 19 18 17 22 22 C 1.55159 * 101.67597 * 323.27676 * 19 18 17 23 23 H 1.09000 * 110.86980 * 276.89761 * 22 19 18 24 24 O 1.42900 * 110.71768 * 153.69935 * 22 19 18 25 25 C 1.47024 * 125.64833 * 179.97438 * 17 15 12 26 26 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 28 28 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 29 29 H 1.09001 * 109.47194 * 299.99742 * 10 9 7 30 30 H 1.08992 * 109.47399 * 59.99914 * 10 9 7 31 31 H 1.09001 * 109.47109 * 299.99380 * 11 10 9 32 32 H 1.09002 * 109.47508 * 59.99571 * 11 10 9 33 33 H 1.00902 * 111.00150 * 300.00341 * 14 12 11 34 34 H 1.00894 * 110.99462 * 63.95653 * 14 12 11 35 35 H 1.09002 * 110.36682 * 322.99734 * 18 17 15 36 36 H 1.09002 * 110.36782 * 85.32838 * 18 17 15 37 37 H 0.96693 * 114.00044 * 292.37309 * 21 19 18 38 38 H 0.96702 * 114.00343 * 185.02622 * 24 22 19 39 39 H 1.09000 * 109.88479 * 298.32982 * 25 17 15 40 40 H 1.09006 * 109.87733 * 59.33265 * 25 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 6 2.4747 -6.1500 -0.0005 13 1 3.1583 -6.0432 0.8417 14 7 3.2386 -6.1418 -1.2553 15 6 1.7252 -7.4516 0.1227 16 8 1.5135 -8.1252 -0.8633 17 7 1.2902 -7.8671 1.3288 18 6 1.4830 -7.1535 2.6043 19 6 1.3901 -8.2492 3.6924 20 1 2.3371 -8.7800 3.7903 21 8 0.9839 -7.6964 4.9459 22 6 0.2904 -9.1766 3.1109 23 1 -0.7033 -8.7974 3.3494 24 8 0.4489 -10.5125 3.5930 25 6 0.5497 -9.1099 1.5912 26 1 -0.4850 0.8400 0.0004 27 1 0.6241 -2.5568 -0.8903 28 1 0.6247 -2.5571 0.8897 29 1 2.8720 -3.6043 -0.8905 30 1 2.8720 -3.6043 0.8894 31 1 0.8535 -5.0451 0.8886 32 1 0.8539 -5.0446 -0.8913 33 1 2.6268 -6.2396 -2.0517 34 1 3.8003 -5.3071 -1.3311 35 1 2.4631 -6.6769 2.6280 36 1 0.6963 -6.4127 2.7473 37 1 1.6392 -7.1099 5.3479 38 1 -0.1656 -11.1478 3.2005 39 1 -0.3983 -9.0972 1.0534 40 1 1.1430 -9.9683 1.2760 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691604335.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:49 Heat of formation + Delta-G solvation = -174.364406 kcal Electronic energy + Delta-G solvation = -21328.199831 eV Core-core repulsion = 17948.053181 eV Total energy + Delta-G solvation = -3380.146650 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.51382 -39.62766 -37.45699 -37.10919 -36.39998 -35.28413 -33.01481 -31.22701 -29.69746 -29.17452 -26.95166 -24.97672 -23.58495 -22.12076 -21.83194 -20.38698 -19.12578 -18.74376 -18.46001 -17.67079 -17.24623 -16.59674 -16.50142 -16.24815 -15.89519 -15.55379 -15.15349 -14.99278 -14.70588 -14.33029 -14.14350 -14.05801 -13.68070 -13.60027 -13.36936 -13.23463 -12.90977 -12.57279 -12.42243 -12.36952 -11.73617 -11.51621 -11.45283 -11.34632 -11.32605 -11.21976 -10.77615 -10.55855 -9.87622 -9.70589 -8.20115 -6.31359 1.41263 1.41862 1.45423 1.53014 1.66821 2.41111 2.86456 3.04732 3.13678 3.25899 3.58765 3.62353 3.83687 3.91887 3.95032 4.00099 4.10476 4.31122 4.35432 4.49261 4.51495 4.62136 4.70789 4.74057 4.89297 4.98699 5.08745 5.16170 5.22862 5.51958 5.72442 5.85006 5.98305 6.23626 6.27234 6.45621 6.72549 6.79332 6.86755 6.99229 7.38648 8.91522 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.022616 B = 0.003735 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.775229 B = 7494.602003 C = 8266.889466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.963 3.037 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.541 4.541 8 H 0.064 0.936 9 C 0.023 3.977 10 C -0.093 4.093 11 C -0.134 4.134 12 C 0.090 3.910 13 H 0.122 0.878 14 N -0.832 5.832 15 C 0.537 3.463 16 O -0.569 6.569 17 N -0.613 5.613 18 C 0.066 3.934 19 C 0.105 3.895 20 H 0.090 0.910 21 O -0.564 6.564 22 C 0.106 3.894 23 H 0.089 0.911 24 O -0.564 6.564 25 C 0.078 3.922 26 H 0.262 0.738 27 H -0.017 1.017 28 H -0.007 1.007 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.047 0.953 33 H 0.346 0.654 34 H 0.359 0.641 35 H 0.107 0.893 36 H 0.085 0.915 37 H 0.405 0.595 38 H 0.402 0.598 39 H 0.075 0.925 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.684 -17.565 8.395 19.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.199 4.199 3 Si 0.788 3.212 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.183 1.183 7 C -0.579 4.579 8 H 0.083 0.917 9 C -0.014 4.014 10 C -0.131 4.131 11 C -0.174 4.174 12 C -0.025 4.025 13 H 0.140 0.860 14 N -0.365 5.365 15 C 0.326 3.674 16 O -0.447 6.447 17 N -0.350 5.350 18 C -0.057 4.057 19 C 0.045 3.955 20 H 0.107 0.893 21 O -0.372 6.372 22 C 0.047 3.953 23 H 0.107 0.893 24 O -0.373 6.373 25 C -0.045 4.045 26 H 0.071 0.929 27 H 0.002 0.998 28 H 0.011 0.989 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.159 0.841 34 H 0.175 0.825 35 H 0.126 0.874 36 H 0.103 0.897 37 H 0.256 0.744 38 H 0.253 0.747 39 H 0.093 0.907 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.756 -18.535 8.327 20.664 hybrid contribution -0.687 1.949 -0.734 2.193 sum 3.069 -16.586 7.593 18.497 Atomic orbital electron populations 1.70101 1.07889 1.27709 1.51858 1.25987 0.95700 1.03421 0.94833 0.85471 0.78821 0.78540 0.78373 1.20083 1.21008 1.18348 1.21725 0.93697 0.92243 1.50218 0.91750 1.19006 0.94484 0.93298 0.94600 1.21423 0.97906 0.92272 1.01454 1.22218 0.98344 0.94540 1.02272 1.21348 0.95069 0.89618 0.96510 0.85989 1.58708 1.28135 1.46454 1.03187 1.20627 0.78258 0.87278 0.81208 1.90651 1.58450 1.58109 1.37521 1.48189 1.56334 1.23353 1.07092 1.23252 1.04670 0.96015 0.81777 1.22710 0.97590 0.91847 0.83324 0.89269 1.86490 1.48836 1.67687 1.34196 1.22662 0.99402 0.83814 0.89471 0.89342 1.86508 1.63890 1.18049 1.68813 1.22754 0.97342 0.87739 0.96699 0.92880 0.99822 0.98897 0.92543 0.91493 0.91204 0.93429 0.84097 0.82505 0.87444 0.89676 0.74387 0.74670 0.90654 0.90472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.20 13.29 21.45 0.28 -55.91 16 2 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 3 Si 0.96 43.13 29.54 68.60 2.03 45.15 16 4 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 7 C -0.54 -29.57 9.11 25.60 0.23 -29.33 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.02 1.17 4.97 29.85 0.15 1.31 16 10 C -0.09 -3.36 4.92 30.59 0.15 -3.21 16 11 C -0.13 -4.11 4.83 30.59 0.15 -3.97 16 12 C 0.09 2.34 2.62 44.17 0.12 2.46 16 13 H 0.12 2.63 6.91 -2.39 -0.02 2.61 16 14 N -0.83 -22.26 8.94 -171.79 -1.54 -23.80 16 15 C 0.54 15.42 7.10 87.66 0.62 16.04 16 16 O -0.57 -20.47 16.58 -3.01 -0.05 -20.52 16 17 N -0.61 -13.78 3.33 -812.21 -2.70 -16.49 16 18 C 0.07 1.10 5.97 86.78 0.52 1.62 16 19 C 0.11 1.65 4.14 31.91 0.13 1.78 16 20 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 21 O -0.56 -8.75 13.47 -148.98 -2.01 -10.75 16 22 C 0.11 1.72 4.07 31.78 0.13 1.85 16 23 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 24 O -0.56 -8.69 13.39 -148.98 -2.00 -10.68 16 25 C 0.08 1.49 6.64 86.73 0.58 2.07 16 26 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 27 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 28 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 29 H 0.06 1.96 6.87 -2.39 -0.02 1.94 16 30 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.07 2.08 7.42 -2.39 -0.02 2.07 16 32 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.35 9.88 8.58 -89.69 -0.77 9.11 16 34 H 0.36 8.67 7.55 -89.70 -0.68 7.99 16 35 H 0.11 1.43 6.92 -2.39 -0.02 1.41 16 36 H 0.09 1.53 7.87 -2.39 -0.02 1.51 16 37 H 0.40 2.72 9.12 -74.06 -0.68 2.04 16 38 H 0.40 2.62 9.11 -74.06 -0.67 1.94 16 39 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.08 1.54 8.06 -2.38 -0.02 1.52 16 Total: -1.00 -74.84 331.15 -4.45 -79.29 By element: Atomic # 1 Polarization: 24.44 SS G_CDS: -1.71 Total: 22.73 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: 3.24 Total: -9.01 kcal Atomic # 7 Polarization: -92.24 SS G_CDS: -3.95 Total: -96.20 kcal Atomic # 8 Polarization: -37.91 SS G_CDS: -4.05 Total: -41.96 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal Total: -74.84 -4.45 -79.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691604335.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.070 kcal (2) G-P(sol) polarization free energy of solvation -74.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds