Wall clock time and date at job start Mon Mar 30 2020 04:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 119.99883 * 2 1 4 4 H 1.48504 * 109.47248 * 269.99753 * 3 2 1 5 5 H 1.48498 * 109.47272 * 30.00058 * 3 2 1 6 6 H 1.48507 * 109.46912 * 149.99928 * 3 2 1 7 7 C 1.37878 * 119.99760 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99954 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00375 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47452 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47332 * 180.02562 * 10 9 7 12 12 H 1.08996 * 109.47352 * 54.99600 * 11 10 9 13 13 N 1.46905 * 109.46947 * 294.99830 * 11 10 9 14 14 C 1.50697 * 109.47213 * 174.99878 * 11 10 9 15 15 O 1.21286 * 119.99959 * 100.00048 * 14 11 10 16 16 N 1.34775 * 119.99977 * 279.99847 * 14 11 10 17 17 C 1.47417 * 125.65232 * 0.02562 * 16 14 11 18 18 C 1.54900 * 104.83744 * 204.09321 * 17 16 14 19 19 H 1.08996 * 111.01123 * 204.87874 * 18 17 16 20 20 O 1.42899 * 111.00775 * 81.06304 * 18 17 16 21 21 C 1.55158 * 101.58199 * 322.99002 * 18 17 16 22 22 H 1.08999 * 110.72357 * 276.96033 * 21 18 17 23 23 C 1.53005 * 110.72285 * 153.86347 * 21 18 17 24 24 O 1.42898 * 109.46932 * 174.99994 * 23 21 18 25 25 C 1.47027 * 125.64766 * 179.71643 * 16 14 11 26 26 H 0.97001 * 119.99959 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47129 * 60.00289 * 9 7 2 28 28 H 1.09004 * 109.47511 * 300.00408 * 9 7 2 29 29 H 1.08997 * 109.47653 * 60.00089 * 10 9 7 30 30 H 1.09001 * 109.47049 * 300.00036 * 10 9 7 31 31 H 1.00901 * 110.99869 * 176.04901 * 13 11 10 32 32 H 1.00896 * 110.99543 * 300.00023 * 13 11 10 33 33 H 1.08999 * 110.36525 * 322.93403 * 17 16 14 34 34 H 1.09004 * 110.36902 * 85.13956 * 17 16 14 35 35 H 0.96706 * 114.00058 * 61.45074 * 20 18 17 36 36 H 1.09002 * 109.47083 * 294.99850 * 23 21 18 37 37 H 1.08998 * 109.47213 * 55.00109 * 23 21 18 38 38 H 0.96706 * 113.99515 * 179.97438 * 24 23 21 39 39 H 1.08999 * 109.88335 * 298.39513 * 25 16 14 40 40 H 1.09000 * 109.88245 * 59.55668 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 1 0.7883 -5.0068 -0.8431 13 7 0.7280 -5.1189 1.2538 14 6 2.4548 -6.1298 -0.1250 15 8 2.7863 -6.7536 0.8608 16 7 2.9580 -6.4585 -1.3313 17 6 2.6429 -5.7876 -2.6056 18 6 2.9308 -6.8503 -3.6952 19 1 3.1583 -6.3784 -4.6510 20 8 1.8372 -7.7610 -3.8242 21 6 4.1812 -7.5617 -3.1138 22 1 5.0876 -7.0061 -3.3542 23 6 4.2761 -8.9985 -3.6312 24 8 5.4942 -9.5897 -3.1743 25 6 3.9171 -7.5416 -1.5934 26 1 -0.4850 0.8401 -0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6246 -2.5571 0.8897 29 1 2.8719 -3.6044 0.8894 30 1 2.8718 -3.6043 -0.8905 31 1 0.1637 -5.9553 1.2510 32 1 1.3477 -5.1034 2.0500 33 1 1.5936 -5.4937 -2.6302 34 1 3.2834 -4.9165 -2.7443 35 1 1.0069 -7.3432 -4.0912 36 1 3.4299 -9.5756 -3.2583 37 1 4.2608 -8.9940 -4.7210 38 1 5.6211 -10.5033 -3.4650 39 1 4.8464 -7.3519 -1.0563 40 1 3.4936 -8.4958 -1.2799 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691630936.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:54 Heat of formation + Delta-G solvation = -141.468147 kcal Electronic energy + Delta-G solvation = -21648.420016 eV Core-core repulsion = 18269.699855 eV Total energy + Delta-G solvation = -3378.720161 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.42062 -38.59842 -36.81373 -35.43175 -35.16120 -32.81451 -31.88797 -30.10156 -28.91945 -27.09348 -25.48160 -23.64393 -22.69045 -20.59603 -20.29116 -19.27839 -17.88097 -17.53144 -17.11997 -16.25609 -16.00350 -15.49799 -15.33465 -14.98875 -14.51344 -14.42063 -14.14199 -13.93914 -13.50834 -12.98457 -12.69194 -12.54038 -12.27725 -12.08511 -11.83736 -11.55068 -11.32245 -11.18711 -10.90373 -10.67261 -10.60491 -10.50380 -10.22158 -10.04525 -9.79801 -9.37976 -9.01325 -8.60505 -8.36248 -8.21543 -5.95368 -3.97562 2.78933 3.02200 3.33208 3.40098 3.43734 3.66872 3.81773 4.17615 4.30121 4.48773 4.81121 4.86834 4.89204 4.98437 5.10403 5.13664 5.32136 5.36912 5.40214 5.42719 5.55133 5.62244 5.80927 5.83177 5.90815 6.23353 6.42933 6.65712 7.06641 7.26752 7.32628 7.38800 7.57882 7.73967 7.79542 7.94410 8.11520 8.29289 8.47046 9.10359 9.65709 11.15502 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.024062 B = 0.004023 C = 0.003805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.393709 B = 6957.716341 C = 7357.020131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.889 3.111 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.522 4.522 8 H 0.052 0.948 9 C 0.033 3.967 10 C -0.095 4.095 11 C 0.083 3.917 12 H 0.095 0.905 13 N -0.807 5.807 14 C 0.498 3.502 15 O -0.553 6.553 16 N -0.613 5.613 17 C 0.067 3.933 18 C 0.097 3.903 19 H 0.086 0.914 20 O -0.556 6.556 21 C -0.092 4.092 22 H 0.104 0.896 23 C 0.094 3.906 24 O -0.576 6.576 25 C 0.119 3.881 26 H 0.259 0.741 27 H 0.012 0.988 28 H 0.035 0.965 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.334 0.666 32 H 0.348 0.652 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.384 0.616 36 H 0.058 0.942 37 H 0.050 0.950 38 H 0.380 0.620 39 H 0.068 0.932 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.278 -17.342 -11.018 21.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.717 3.283 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.561 4.561 8 H 0.070 0.930 9 C -0.005 4.005 10 C -0.133 4.133 11 C -0.033 4.033 12 H 0.113 0.887 13 N -0.334 5.334 14 C 0.286 3.714 15 O -0.430 6.430 16 N -0.348 5.348 17 C -0.056 4.056 18 C 0.037 3.963 19 H 0.104 0.896 20 O -0.363 6.363 21 C -0.111 4.111 22 H 0.122 0.878 23 C 0.016 3.984 24 O -0.382 6.382 25 C -0.004 4.004 26 H 0.069 0.931 27 H 0.030 0.970 28 H 0.053 0.947 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.145 0.855 32 H 0.162 0.838 33 H 0.107 0.893 34 H 0.105 0.895 35 H 0.233 0.767 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.227 0.773 39 H 0.086 0.914 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.423 -16.667 -10.122 20.240 hybrid contribution 0.555 -0.033 -0.415 0.694 sum 5.978 -16.699 -10.538 20.631 Atomic orbital electron populations 1.69972 1.05952 1.26426 1.50828 1.24987 0.94802 0.99045 0.95460 0.86651 0.79923 0.83761 0.77980 1.20780 1.21247 1.19963 1.21276 0.92898 0.91306 1.50607 0.93002 1.19004 0.93507 0.89792 0.98152 1.21650 0.98876 0.92127 1.00662 1.21810 0.93340 0.93181 0.94925 0.88681 1.59036 1.26878 1.44228 1.03304 1.22517 0.82112 0.85767 0.81000 1.90654 1.61469 1.54615 1.36306 1.48557 1.45329 1.33771 1.07180 1.23160 1.02925 0.96016 0.83513 1.22957 0.87018 0.89374 0.96974 0.89626 1.86466 1.20972 1.36875 1.91987 1.22325 0.97355 0.96454 0.94977 0.87794 1.21925 0.86410 0.92641 0.97388 1.86476 1.41198 1.32106 1.78417 1.21856 0.93035 0.91248 0.94239 0.93092 0.96966 0.94666 0.92841 0.92938 0.85454 0.83792 0.89339 0.89523 0.76730 0.92406 0.93170 0.77287 0.91359 0.91434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.72 13.29 55.43 0.74 -25.98 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 8 H 0.05 1.43 7.74 -52.48 -0.41 1.02 16 9 C 0.03 0.83 4.86 -27.89 -0.14 0.69 16 10 C -0.09 -1.94 4.77 -26.73 -0.13 -2.07 16 11 C 0.08 1.45 2.57 -68.86 -0.18 1.27 16 12 H 0.10 1.54 6.91 -51.93 -0.36 1.18 16 13 N -0.81 -14.10 8.44 -5.65 -0.05 -14.15 16 14 C 0.50 8.56 7.09 -10.99 -0.08 8.49 16 15 O -0.55 -11.14 16.58 5.55 0.09 -11.05 16 16 N -0.61 -8.67 3.33 -170.52 -0.57 -9.23 16 17 C 0.07 0.72 5.96 -2.54 -0.02 0.71 16 18 C 0.10 0.81 4.17 -24.59 -0.10 0.70 16 19 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 20 O -0.56 -4.66 12.34 -35.23 -0.43 -5.10 16 21 C -0.09 -0.90 3.13 -88.78 -0.28 -1.17 16 22 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 23 C 0.09 0.82 5.87 37.16 0.22 1.04 16 24 O -0.58 -5.25 13.60 -35.23 -0.48 -5.72 16 25 C 0.12 1.56 6.42 -3.06 -0.02 1.54 16 26 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 27 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.03 0.98 7.75 -51.93 -0.40 0.57 16 29 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.05 1.01 7.40 -51.93 -0.38 0.62 16 31 H 0.33 5.11 9.06 -39.29 -0.36 4.75 16 32 H 0.35 6.20 8.58 -39.29 -0.34 5.87 16 33 H 0.09 0.90 6.92 -51.93 -0.36 0.54 16 34 H 0.09 0.92 7.86 -51.93 -0.41 0.52 16 35 H 0.38 1.85 9.11 45.56 0.42 2.26 16 36 H 0.06 0.55 7.53 -51.93 -0.39 0.16 16 37 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.38 1.71 9.12 45.56 0.42 2.12 16 39 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.07 0.96 7.69 -51.93 -0.40 0.56 16 LS Contribution 330.65 15.07 4.98 4.98 Total: -1.00 -35.49 330.65 -6.51 -42.00 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -4.64 Total: 9.91 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: -1.13 Total: -2.24 kcal Atomic # 7 Polarization: -49.49 SS G_CDS: 0.12 Total: -49.37 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: -0.82 Total: -21.87 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -35.49 -6.51 -42.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691630936.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.473 kcal (2) G-P(sol) polarization free energy of solvation -35.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds