Wall clock time and date at job start Mon Mar 30 2020 04:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 119.99883 * 2 1 4 4 H 1.48504 * 109.47248 * 269.99753 * 3 2 1 5 5 H 1.48498 * 109.47272 * 30.00058 * 3 2 1 6 6 H 1.48507 * 109.46912 * 149.99928 * 3 2 1 7 7 C 1.37878 * 119.99760 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99954 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00375 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47452 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47332 * 180.02562 * 10 9 7 12 12 H 1.08996 * 109.47352 * 54.99600 * 11 10 9 13 13 N 1.46905 * 109.46947 * 294.99830 * 11 10 9 14 14 C 1.50697 * 109.47213 * 174.99878 * 11 10 9 15 15 O 1.21286 * 119.99959 * 100.00048 * 14 11 10 16 16 N 1.34775 * 119.99977 * 279.99847 * 14 11 10 17 17 C 1.47417 * 125.65232 * 0.02562 * 16 14 11 18 18 C 1.54900 * 104.83744 * 204.09321 * 17 16 14 19 19 H 1.08996 * 111.01123 * 204.87874 * 18 17 16 20 20 O 1.42899 * 111.00775 * 81.06304 * 18 17 16 21 21 C 1.55158 * 101.58199 * 322.99002 * 18 17 16 22 22 H 1.08999 * 110.72357 * 276.96033 * 21 18 17 23 23 C 1.53005 * 110.72285 * 153.86347 * 21 18 17 24 24 O 1.42898 * 109.46932 * 174.99994 * 23 21 18 25 25 C 1.47027 * 125.64766 * 179.71643 * 16 14 11 26 26 H 0.97001 * 119.99959 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47129 * 60.00289 * 9 7 2 28 28 H 1.09004 * 109.47511 * 300.00408 * 9 7 2 29 29 H 1.08997 * 109.47653 * 60.00089 * 10 9 7 30 30 H 1.09001 * 109.47049 * 300.00036 * 10 9 7 31 31 H 1.00901 * 110.99869 * 176.04901 * 13 11 10 32 32 H 1.00896 * 110.99543 * 300.00023 * 13 11 10 33 33 H 1.08999 * 110.36525 * 322.93403 * 17 16 14 34 34 H 1.09004 * 110.36902 * 85.13956 * 17 16 14 35 35 H 0.96706 * 114.00058 * 61.45074 * 20 18 17 36 36 H 1.09002 * 109.47083 * 294.99850 * 23 21 18 37 37 H 1.08998 * 109.47213 * 55.00109 * 23 21 18 38 38 H 0.96706 * 113.99515 * 179.97438 * 24 23 21 39 39 H 1.08999 * 109.88335 * 298.39513 * 25 16 14 40 40 H 1.09000 * 109.88245 * 59.55668 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 1 0.7883 -5.0068 -0.8431 13 7 0.7280 -5.1189 1.2538 14 6 2.4548 -6.1298 -0.1250 15 8 2.7863 -6.7536 0.8608 16 7 2.9580 -6.4585 -1.3313 17 6 2.6429 -5.7876 -2.6056 18 6 2.9308 -6.8503 -3.6952 19 1 3.1583 -6.3784 -4.6510 20 8 1.8372 -7.7610 -3.8242 21 6 4.1812 -7.5617 -3.1138 22 1 5.0876 -7.0061 -3.3542 23 6 4.2761 -8.9985 -3.6312 24 8 5.4942 -9.5897 -3.1743 25 6 3.9171 -7.5416 -1.5934 26 1 -0.4850 0.8401 -0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6246 -2.5571 0.8897 29 1 2.8719 -3.6044 0.8894 30 1 2.8718 -3.6043 -0.8905 31 1 0.1637 -5.9553 1.2510 32 1 1.3477 -5.1034 2.0500 33 1 1.5936 -5.4937 -2.6302 34 1 3.2834 -4.9165 -2.7443 35 1 1.0069 -7.3432 -4.0912 36 1 3.4299 -9.5756 -3.2583 37 1 4.2608 -8.9940 -4.7210 38 1 5.6211 -10.5033 -3.4650 39 1 4.8464 -7.3519 -1.0563 40 1 3.4936 -8.4958 -1.2799 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691630936.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:54 Heat of formation + Delta-G solvation = -173.682893 kcal Electronic energy + Delta-G solvation = -21649.816952 eV Core-core repulsion = 18269.699855 eV Total energy + Delta-G solvation = -3380.117098 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.53425 -39.65796 -37.48529 -36.85864 -36.23945 -34.82953 -32.80599 -31.94765 -29.79020 -28.53286 -26.93271 -25.01030 -23.82946 -22.15304 -21.28017 -20.48029 -18.87631 -18.34458 -18.27583 -18.10507 -17.11509 -16.78791 -16.66697 -16.36938 -15.78297 -15.36679 -15.27479 -15.04010 -14.71136 -14.32911 -13.98808 -13.88278 -13.61027 -13.48037 -13.32398 -12.80311 -12.72168 -12.50486 -12.31803 -12.09050 -11.87358 -11.81065 -11.65038 -11.33086 -11.12018 -10.96742 -10.87383 -10.48473 -9.75451 -9.69459 -8.13442 -6.23648 1.41218 1.43258 1.44379 1.54647 1.88006 2.45098 2.99930 3.19570 3.19824 3.36859 3.47527 3.59202 3.75871 3.98847 4.08815 4.22272 4.25999 4.33444 4.50541 4.52019 4.61826 4.66514 4.72041 4.75757 4.89161 4.91588 5.11166 5.19265 5.22815 5.56990 5.83320 5.97813 6.03648 6.30146 6.34698 6.45283 6.83824 6.89608 6.94252 6.97972 7.44508 8.97691 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.024062 B = 0.004023 C = 0.003805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.393709 B = 6957.716341 C = 7357.020131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.004 3.996 3 Si 0.959 3.041 4 H -0.269 1.269 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.544 4.544 8 H 0.054 0.946 9 C 0.043 3.957 10 C -0.080 4.080 11 C 0.093 3.907 12 H 0.111 0.889 13 N -0.817 5.817 14 C 0.496 3.504 15 O -0.590 6.590 16 N -0.609 5.609 17 C 0.055 3.945 18 C 0.112 3.888 19 H 0.122 0.878 20 O -0.569 6.569 21 C -0.090 4.090 22 H 0.113 0.887 23 C 0.099 3.901 24 O -0.596 6.596 25 C 0.117 3.883 26 H 0.262 0.738 27 H -0.002 1.002 28 H 0.004 0.996 29 H 0.038 0.962 30 H 0.067 0.933 31 H 0.346 0.654 32 H 0.345 0.655 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.400 0.600 36 H 0.047 0.953 37 H 0.072 0.928 38 H 0.399 0.601 39 H 0.051 0.949 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.104 -17.235 -13.099 22.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.784 3.216 4 H -0.194 1.194 5 H -0.210 1.210 6 H -0.193 1.193 7 C -0.582 4.582 8 H 0.072 0.928 9 C 0.005 3.995 10 C -0.118 4.118 11 C -0.022 4.022 12 H 0.128 0.872 13 N -0.346 5.346 14 C 0.284 3.716 15 O -0.471 6.471 16 N -0.342 5.342 17 C -0.067 4.067 18 C 0.052 3.948 19 H 0.139 0.861 20 O -0.378 6.378 21 C -0.109 4.109 22 H 0.131 0.869 23 C 0.021 3.979 24 O -0.405 6.405 25 C -0.006 4.006 26 H 0.071 0.929 27 H 0.016 0.984 28 H 0.023 0.977 29 H 0.057 0.943 30 H 0.085 0.915 31 H 0.159 0.841 32 H 0.158 0.842 33 H 0.115 0.885 34 H 0.110 0.890 35 H 0.252 0.748 36 H 0.065 0.935 37 H 0.090 0.910 38 H 0.249 0.751 39 H 0.069 0.931 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.247 -16.584 -12.261 21.550 hybrid contribution 0.281 -0.117 0.219 0.375 sum 6.527 -16.702 -12.042 21.600 Atomic orbital electron populations 1.70098 1.07580 1.27528 1.51650 1.25869 0.95681 1.02916 0.94934 0.85549 0.78550 0.78979 0.78553 1.19419 1.21013 1.19334 1.21702 0.93290 0.92700 1.50507 0.92766 1.18798 0.93717 0.91068 0.95876 1.21376 0.97804 0.92044 1.00616 1.21601 0.93381 0.91795 0.95442 0.87177 1.59031 1.27091 1.45145 1.03288 1.22294 0.82116 0.85584 0.81577 1.90632 1.62732 1.55867 1.37829 1.48604 1.44396 1.33729 1.07468 1.23523 1.03607 0.96997 0.82617 1.22941 0.86347 0.88209 0.97312 0.86068 1.86442 1.21914 1.37393 1.92078 1.22382 0.98569 0.97757 0.92179 0.86878 1.21876 0.85905 0.91664 0.98422 1.86432 1.41311 1.33807 1.78968 1.21925 0.91731 0.90035 0.96938 0.92898 0.98354 0.97728 0.94340 0.91464 0.84087 0.84200 0.88539 0.88994 0.74839 0.93470 0.90974 0.75138 0.93058 0.92996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.92 13.29 21.45 0.28 -55.64 16 2 C 0.00 0.23 5.46 84.66 0.46 0.69 16 3 Si 0.96 43.99 29.54 68.60 2.03 46.01 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 5 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 7 C -0.54 -30.64 9.11 25.60 0.23 -30.40 16 8 H 0.05 2.96 7.74 -2.91 -0.02 2.93 16 9 C 0.04 2.20 4.86 29.84 0.15 2.34 16 10 C -0.08 -3.28 4.77 30.59 0.15 -3.13 16 11 C 0.09 3.23 2.57 44.17 0.11 3.35 16 12 H 0.11 3.46 6.91 -2.39 -0.02 3.44 16 13 N -0.82 -28.92 8.44 -171.80 -1.45 -30.37 16 14 C 0.50 17.04 7.09 87.66 0.62 17.66 16 15 O -0.59 -24.20 16.58 -3.05 -0.05 -24.25 16 16 N -0.61 -16.71 3.33 -811.80 -2.70 -19.41 16 17 C 0.05 1.06 5.96 86.85 0.52 1.57 16 18 C 0.11 1.51 4.17 31.98 0.13 1.64 16 19 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 20 O -0.57 -7.89 12.34 -148.98 -1.84 -9.73 16 21 C -0.09 -1.56 3.13 -9.60 -0.03 -1.59 16 22 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 23 C 0.10 1.51 5.87 71.98 0.42 1.94 16 24 O -0.60 -9.89 13.60 -148.98 -2.03 -11.92 16 25 C 0.12 3.00 6.42 86.73 0.56 3.56 16 26 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 27 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 28 H 0.00 0.25 7.75 -2.38 -0.02 0.23 16 29 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.07 2.52 7.40 -2.39 -0.02 2.51 16 31 H 0.35 10.63 9.06 -89.69 -0.81 9.82 16 32 H 0.34 12.61 8.58 -89.70 -0.77 11.84 16 33 H 0.10 1.72 6.92 -2.39 -0.02 1.70 16 34 H 0.09 1.73 7.86 -2.38 -0.02 1.71 16 35 H 0.40 2.62 9.11 -74.05 -0.67 1.95 16 36 H 0.05 0.82 7.53 -2.39 -0.02 0.80 16 37 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.40 2.91 9.12 -74.05 -0.68 2.24 16 39 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.05 1.49 7.69 -2.39 -0.02 1.47 16 Total: -1.00 -76.70 330.65 -4.28 -80.97 By element: Atomic # 1 Polarization: 28.55 SS G_CDS: -1.85 Total: 26.71 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: 3.32 Total: -2.38 kcal Atomic # 7 Polarization: -101.55 SS G_CDS: -3.86 Total: -105.42 kcal Atomic # 8 Polarization: -41.98 SS G_CDS: -3.91 Total: -45.90 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Total: -76.70 -4.28 -80.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691630936.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.708 kcal (2) G-P(sol) polarization free energy of solvation -76.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds