Wall clock time and date at job start Mon Mar 30 2020 04:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46929 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.47238 * 55.00605 * 11 10 9 13 13 N 1.46898 * 109.47170 * 295.00028 * 11 10 9 14 14 C 1.50707 * 109.47058 * 175.00132 * 11 10 9 15 15 O 1.21276 * 119.99824 * 99.99588 * 14 11 10 16 16 N 1.34772 * 119.99926 * 280.00535 * 14 11 10 17 17 C 1.47023 * 125.64997 * 0.02562 * 16 14 11 18 18 C 1.54324 * 107.27319 * 181.02577 * 17 16 14 19 19 H 1.08996 * 110.72148 * 263.65295 * 18 17 16 20 20 O 1.42900 * 110.71837 * 140.55456 * 18 17 16 21 21 C 1.55163 * 102.93893 * 22.19890 * 18 17 16 22 22 H 1.08995 * 111.00080 * 82.61010 * 21 18 17 23 23 C 1.53005 * 111.00073 * 206.42080 * 21 18 17 24 24 O 1.42896 * 109.47120 * 184.99819 * 23 21 18 25 25 C 1.47428 * 125.65018 * 179.71702 * 16 14 11 26 26 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 28 28 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 29 29 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 30 30 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 31 31 H 1.00903 * 111.00091 * 176.05005 * 13 11 10 32 32 H 1.00898 * 110.99837 * 299.99934 * 13 11 10 33 33 H 1.09003 * 109.88354 * 300.44920 * 17 16 14 34 34 H 1.09005 * 109.88324 * 61.45598 * 17 16 14 35 35 H 0.96707 * 113.99793 * 61.46003 * 20 18 17 36 36 H 1.08994 * 109.46945 * 305.00091 * 23 21 18 37 37 H 1.09002 * 109.46885 * 65.00145 * 23 21 18 38 38 H 0.96698 * 113.99949 * 180.02562 * 24 23 21 39 39 H 1.08992 * 110.36391 * 274.74479 * 25 16 14 40 40 H 1.09006 * 110.36483 * 37.06395 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4803 -4.9870 0.0012 12 1 0.7880 -5.0073 -0.8404 13 7 0.7290 -5.1181 1.2567 14 6 2.4550 -6.1299 -0.1226 15 8 2.7871 -6.7530 0.8633 16 7 2.9575 -6.4592 -1.3290 17 6 2.6425 -5.7907 -2.6000 18 6 3.4268 -6.5227 -3.7094 19 1 4.3616 -6.0057 -3.9261 20 8 2.6338 -6.6464 -4.8917 21 6 3.6979 -7.9157 -3.0820 22 1 2.8364 -8.5724 -3.2020 23 6 4.9553 -8.5507 -3.6791 24 8 5.1094 -9.8756 -3.1663 25 6 3.9191 -7.5454 -1.5918 26 1 -0.4850 -0.8401 -0.0004 27 1 0.6241 -2.5566 0.8903 28 1 0.6247 -2.5571 -0.8897 29 1 2.8720 -3.6043 -0.8894 30 1 2.8720 -3.6043 0.8906 31 1 0.1647 -5.9545 1.2548 32 1 1.3491 -5.1021 2.0525 33 1 1.5726 -5.8556 -2.7978 34 1 2.9482 -4.7454 -2.5548 35 1 2.3715 -5.8003 -5.2797 36 1 4.8623 -8.5897 -4.7644 37 1 5.8267 -7.9535 -3.4103 38 1 5.8884 -10.3394 -3.5026 39 1 4.9391 -7.1958 -1.4326 40 1 3.7069 -8.4027 -0.9529 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691630939.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:02 Heat of formation + Delta-G solvation = -179.588733 kcal Electronic energy + Delta-G solvation = -21574.511536 eV Core-core repulsion = 18194.138342 eV Total energy + Delta-G solvation = -3380.373194 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.60945 -39.69996 -37.56402 -37.08459 -36.56293 -35.08482 -32.90601 -31.82081 -29.67279 -28.42267 -26.74972 -25.02658 -23.90300 -22.47462 -21.57959 -20.51171 -19.05319 -18.65988 -18.23848 -18.08716 -17.48788 -17.15448 -16.39438 -16.07324 -15.73757 -15.60108 -15.28592 -14.86832 -14.77026 -14.62883 -14.24128 -14.00033 -13.86736 -13.56439 -13.35765 -12.90290 -12.65016 -12.43351 -12.24920 -12.04700 -11.96745 -11.86859 -11.70928 -11.48754 -11.13433 -10.93923 -10.61996 -10.47948 -9.89414 -9.80579 -8.62070 -6.32317 1.31402 1.55113 1.63489 1.73318 1.82634 2.60803 2.90958 3.05668 3.22527 3.25160 3.40819 3.63551 3.78617 3.84710 3.95571 4.06918 4.12700 4.20955 4.31102 4.46789 4.50101 4.59753 4.65219 4.68466 4.73720 4.76235 5.00211 5.05131 5.12977 5.41590 5.60277 5.92182 6.04986 6.21976 6.25790 6.36006 6.65246 6.76667 6.86096 6.88863 7.49312 8.78970 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.022105 B = 0.004129 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.382833 B = 6778.975805 C = 7422.001480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.038 4.038 3 Si 1.115 2.885 4 H -0.285 1.285 5 H -0.274 1.274 6 H -0.265 1.265 7 C -0.621 4.621 8 H 0.047 0.953 9 C 0.026 3.974 10 C -0.073 4.073 11 C 0.090 3.910 12 H 0.106 0.894 13 N -0.818 5.818 14 C 0.500 3.500 15 O -0.581 6.581 16 N -0.613 5.613 17 C 0.058 3.942 18 C 0.115 3.885 19 H 0.105 0.895 20 O -0.565 6.565 21 C -0.090 4.090 22 H 0.083 0.917 23 C 0.092 3.908 24 O -0.595 6.595 25 C 0.111 3.889 26 H 0.257 0.743 27 H 0.001 0.999 28 H -0.008 1.008 29 H 0.068 0.932 30 H 0.041 0.959 31 H 0.347 0.653 32 H 0.346 0.654 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.404 0.596 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.401 0.599 39 H 0.080 0.920 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.600 -15.950 -12.018 22.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.235 4.235 3 Si 0.937 3.063 4 H -0.211 1.211 5 H -0.200 1.200 6 H -0.190 1.190 7 C -0.658 4.658 8 H 0.066 0.934 9 C -0.011 4.011 10 C -0.111 4.111 11 C -0.026 4.026 12 H 0.124 0.876 13 N -0.347 5.347 14 C 0.288 3.712 15 O -0.462 6.462 16 N -0.347 5.347 17 C -0.065 4.065 18 C 0.055 3.945 19 H 0.123 0.877 20 O -0.374 6.374 21 C -0.109 4.109 22 H 0.101 0.899 23 C 0.014 3.986 24 O -0.404 6.404 25 C -0.011 4.011 26 H 0.066 0.934 27 H 0.019 0.981 28 H 0.010 0.990 29 H 0.087 0.913 30 H 0.060 0.940 31 H 0.161 0.839 32 H 0.160 0.840 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.255 0.745 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.251 0.749 39 H 0.098 0.902 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.718 -14.405 -11.215 20.681 hybrid contribution 0.738 -2.204 0.097 2.327 sum 10.455 -16.609 -11.117 22.556 Atomic orbital electron populations 1.70900 1.07942 1.30003 1.48737 1.27345 0.96611 1.06664 0.92916 0.82962 0.74133 0.71286 0.77947 1.21057 1.19958 1.19006 1.22519 0.94522 0.93695 1.55108 0.93420 1.18972 0.94469 0.92677 0.95011 1.21253 0.97524 0.91503 1.00839 1.21607 0.93513 0.92026 0.95427 0.87604 1.59018 1.27135 1.45318 1.03239 1.22173 0.81935 0.85531 0.81594 1.90642 1.62499 1.55582 1.37452 1.48512 1.44893 1.34162 1.07091 1.23143 1.01983 0.98120 0.83220 1.22662 0.93963 0.94114 0.83777 0.87748 1.86498 1.72901 1.37314 1.40673 1.22334 1.00001 0.96017 0.92528 0.89895 1.22060 0.95489 0.83425 0.97628 1.86443 1.52486 1.28423 1.73053 1.22389 0.93069 0.89690 0.95945 0.93372 0.98093 0.98965 0.91309 0.94017 0.83931 0.84005 0.89874 0.89574 0.74487 0.91296 0.91378 0.74855 0.90182 0.91743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.30 13.65 21.45 0.29 -58.01 16 2 C -0.04 -2.19 5.46 84.65 0.46 -1.72 16 3 Si 1.12 49.90 29.90 68.60 2.05 51.95 16 4 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 5 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 6 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 7 C -0.62 -35.15 9.11 25.60 0.23 -34.92 16 8 H 0.05 2.62 7.74 -2.91 -0.02 2.60 16 9 C 0.03 1.33 4.17 29.85 0.12 1.45 16 10 C -0.07 -2.96 4.77 30.59 0.15 -2.82 16 11 C 0.09 3.10 2.56 44.17 0.11 3.22 16 12 H 0.11 3.42 7.46 -2.39 -0.02 3.41 16 13 N -0.82 -28.59 8.44 -171.80 -1.45 -30.04 16 14 C 0.50 16.74 7.09 87.66 0.62 17.37 16 15 O -0.58 -22.92 16.50 -3.02 -0.05 -22.97 16 16 N -0.61 -16.41 3.32 -811.33 -2.70 -19.11 16 17 C 0.06 1.20 5.96 86.73 0.52 1.72 16 18 C 0.11 1.75 3.79 31.79 0.12 1.87 16 19 H 0.10 1.14 8.04 -2.39 -0.02 1.12 16 20 O -0.57 -8.23 13.39 -148.98 -2.00 -10.22 16 21 C -0.09 -1.63 3.04 -9.32 -0.03 -1.66 16 22 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 23 C 0.09 1.21 6.50 71.98 0.47 1.68 16 24 O -0.59 -9.15 13.63 -148.98 -2.03 -11.18 16 25 C 0.11 2.60 6.35 86.93 0.55 3.15 16 26 H 0.26 16.19 7.22 -92.71 -0.67 15.52 16 27 H 0.00 0.04 7.62 -2.39 -0.02 0.02 16 28 H -0.01 -0.42 8.01 -2.38 -0.02 -0.44 16 29 H 0.07 2.57 6.65 -2.39 -0.02 2.55 16 30 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.35 10.55 9.06 -89.69 -0.81 9.74 16 32 H 0.35 12.41 8.58 -89.70 -0.77 11.64 16 33 H 0.08 1.70 7.76 -2.39 -0.02 1.68 16 34 H 0.09 1.79 6.75 -2.38 -0.02 1.78 16 35 H 0.40 2.74 9.11 -74.05 -0.67 2.07 16 36 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.07 0.67 7.96 -2.39 -0.02 0.65 16 38 H 0.40 2.21 9.12 -74.06 -0.68 1.54 16 39 H 0.08 1.71 7.91 -2.39 -0.02 1.69 16 40 H 0.06 1.78 8.04 -2.38 -0.02 1.76 16 Total: -1.00 -77.25 330.43 -4.29 -81.54 By element: Atomic # 1 Polarization: 30.43 SS G_CDS: -1.74 Total: 28.69 kcal Atomic # 6 Polarization: -13.99 SS G_CDS: 3.33 Total: -10.66 kcal Atomic # 7 Polarization: -103.30 SS G_CDS: -3.85 Total: -107.16 kcal Atomic # 8 Polarization: -40.29 SS G_CDS: -4.07 Total: -44.37 kcal Atomic # 14 Polarization: 49.90 SS G_CDS: 2.05 Total: 51.95 kcal Total: -77.25 -4.29 -81.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691630939.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.044 kcal (2) G-P(sol) polarization free energy of solvation -77.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds