Wall clock time and date at job start Mon Mar 30 2020 04:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86806 * 119.99679 * 2 1 4 4 H 1.48499 * 109.46885 * 270.00228 * 3 2 1 5 5 H 1.48499 * 109.47101 * 29.99830 * 3 2 1 6 6 H 1.48499 * 109.46902 * 150.00477 * 3 2 1 7 7 C 1.37875 * 120.00445 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00383 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99619 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.46747 * 179.97438 * 9 7 2 11 11 C 1.34772 * 119.99845 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00400 * 0.02562 * 11 10 9 13 13 C 1.50707 * 120.00164 * 180.02562 * 11 10 9 14 14 N 1.46900 * 109.46999 * 180.02562 * 13 11 10 15 15 C 1.48720 * 111.01831 * 74.48981 * 14 13 11 16 16 C 1.54381 * 104.51692 * 158.96284 * 15 14 13 17 17 C 1.54257 * 105.14978 * 336.27274 * 16 15 14 18 18 C 1.53002 * 110.32776 * 118.84533 * 17 16 15 19 19 O 1.42900 * 109.46811 * 61.45002 * 18 17 16 20 20 C 1.53009 * 110.32339 * 240.95010 * 17 16 15 21 21 O 1.42900 * 109.46692 * 298.54705 * 20 17 16 22 22 C 1.48567 * 110.99718 * 189.99963 * 14 13 11 23 23 H 0.96999 * 120.00189 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47188 * 60.00339 * 9 7 2 25 25 H 1.08997 * 109.46903 * 299.99682 * 9 7 2 26 26 H 0.97001 * 120.00337 * 0.02562 * 10 9 7 27 27 H 1.08997 * 109.47211 * 59.99899 * 13 11 10 28 28 H 1.08999 * 109.46541 * 300.00089 * 13 11 10 29 29 H 1.09004 * 110.38960 * 40.24251 * 15 14 13 30 30 H 1.08996 * 110.50963 * 277.74694 * 15 14 13 31 31 H 1.09002 * 110.32526 * 217.32092 * 16 15 14 32 32 H 1.08998 * 110.32190 * 95.21733 * 16 15 14 33 33 H 1.08998 * 109.47221 * 181.45249 * 18 17 16 34 34 H 1.08996 * 109.46887 * 301.45306 * 18 17 16 35 35 H 0.96703 * 113.99733 * 180.02562 * 19 18 17 36 36 H 1.09001 * 109.46885 * 58.54444 * 20 17 16 37 37 H 1.08994 * 109.47500 * 178.54660 * 20 17 16 38 38 H 0.96700 * 114.00032 * 179.97438 * 21 20 17 39 39 H 1.08999 * 110.41133 * 82.17552 * 22 14 13 40 40 H 1.09001 * 110.41003 * 319.73948 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 1.7540 -4.8832 0.0011 12 8 0.5617 -5.1050 0.0011 13 6 2.7334 -6.0287 0.0016 14 7 1.9989 -7.3009 0.0015 15 6 1.4113 -7.5774 -1.3364 16 6 1.1707 -9.1024 -1.3457 17 6 2.1585 -9.6727 -0.3072 18 6 1.3984 -10.3767 0.8187 19 8 0.6512 -11.4685 0.2787 20 6 3.1327 -10.6436 -0.9776 21 8 2.4043 -11.7384 -1.5372 22 6 2.9156 -8.4449 0.2429 23 1 -0.4850 0.8400 0.0004 24 1 0.6249 -2.5571 -0.8897 25 1 0.6242 -2.5567 0.8903 26 1 3.1569 -3.4353 0.0009 27 1 3.3600 -5.9706 0.8916 28 1 3.3601 -5.9712 -0.8883 29 1 2.1114 -7.2982 -2.1238 30 1 0.4689 -7.0432 -1.4574 31 1 1.3809 -9.5128 -2.3334 32 1 0.1444 -9.3255 -1.0543 33 1 2.1075 -10.7514 1.5568 34 1 0.7178 -9.6706 1.2944 35 1 0.1431 -11.9613 0.9375 36 1 3.6750 -10.1258 -1.7687 37 1 3.8396 -11.0181 -0.2374 38 1 2.9595 -12.3949 -1.9798 39 1 3.1049 -8.5617 1.3100 40 1 3.8518 -8.3022 -0.2968 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694727069.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:27 Heat of formation + Delta-G solvation = -129.279462 kcal Electronic energy + Delta-G solvation = -21271.197448 eV Core-core repulsion = 17893.005828 eV Total energy + Delta-G solvation = -3378.191620 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.01474 -38.53017 -36.58783 -36.11680 -34.12081 -32.72714 -32.26071 -29.81141 -28.10578 -26.34717 -25.93622 -24.09000 -22.51240 -21.27625 -19.71888 -19.15938 -17.59396 -17.10254 -16.95458 -16.14611 -15.90391 -15.53684 -15.04557 -14.88399 -14.65582 -14.23013 -13.93052 -13.66896 -13.37073 -12.87050 -12.75184 -12.39162 -12.12687 -11.88059 -11.81783 -11.60624 -11.35643 -11.04124 -10.99211 -10.94930 -10.84355 -10.46976 -10.30782 -10.03487 -9.87856 -9.38640 -9.03304 -8.72237 -8.37503 -7.83666 -6.15860 -4.22844 3.24124 3.30116 3.32564 3.42793 3.60979 3.92742 4.12461 4.31378 4.47161 4.52036 4.80003 4.96774 5.09536 5.16110 5.20009 5.24253 5.24858 5.29772 5.36092 5.42848 5.50604 5.55284 5.63215 5.77638 5.82130 6.04825 6.21542 6.31820 6.84360 6.91182 7.34322 7.47974 7.52454 7.54248 7.66069 7.69077 7.98492 8.66256 8.80870 9.16289 9.44111 10.94345 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.052604 B = 0.003027 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.152691 B = 9248.383921 C = 9422.697415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.252 3.748 10 N -0.717 5.717 11 C 0.499 3.501 12 O -0.537 6.537 13 C 0.024 3.976 14 N -0.487 5.487 15 C 0.030 3.970 16 C -0.099 4.099 17 C -0.061 4.061 18 C 0.096 3.904 19 O -0.550 6.550 20 C 0.093 3.907 21 O -0.545 6.545 22 C 0.043 3.957 23 H 0.266 0.734 24 H 0.025 0.975 25 H 0.026 0.974 26 H 0.389 0.611 27 H 0.098 0.902 28 H 0.061 0.939 29 H 0.039 0.961 30 H 0.096 0.904 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.037 0.963 34 H 0.054 0.946 35 H 0.368 0.632 36 H 0.041 0.959 37 H 0.040 0.960 38 H 0.368 0.632 39 H 0.086 0.914 40 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.198 -21.563 -0.504 23.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.581 4.581 8 H 0.081 0.919 9 C 0.131 3.869 10 N -0.366 5.366 11 C 0.283 3.717 12 O -0.414 6.414 13 C -0.108 4.108 14 N -0.210 5.210 15 C -0.097 4.097 16 C -0.137 4.137 17 C -0.062 4.062 18 C 0.018 3.982 19 O -0.354 6.354 20 C 0.015 3.985 21 O -0.349 6.349 22 C -0.085 4.085 23 H 0.076 0.924 24 H 0.043 0.957 25 H 0.044 0.956 26 H 0.221 0.779 27 H 0.116 0.884 28 H 0.079 0.921 29 H 0.057 0.943 30 H 0.114 0.886 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.214 0.786 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.213 0.787 39 H 0.104 0.896 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.502 -20.944 -0.391 22.251 hybrid contribution 1.946 0.664 -0.246 2.070 sum 9.447 -20.280 -0.637 22.382 Atomic orbital electron populations 1.69977 1.06104 1.27286 1.48903 1.24958 0.94911 0.99443 0.94738 0.86419 0.79618 0.82691 0.78194 1.20489 1.20994 1.19761 1.21231 0.93235 0.90505 1.53176 0.91949 1.19071 0.88276 0.81889 0.97669 1.46443 1.10999 1.06095 1.73075 1.20226 0.89534 0.83973 0.77973 1.90655 1.16580 1.84605 1.49562 1.22214 0.95671 0.90276 1.02644 1.65165 1.27371 0.99681 1.28815 1.23328 1.01230 0.96288 0.88870 1.22223 0.99950 0.93204 0.98321 1.21320 0.95551 0.93407 0.95917 1.22039 0.94041 0.88508 0.93597 1.86674 1.65228 1.45681 1.37782 1.22082 0.92623 0.88012 0.95795 1.86732 1.36619 1.35326 1.76174 1.23067 0.94319 0.89654 1.01471 0.92447 0.95669 0.95561 0.77908 0.88363 0.92147 0.94262 0.88557 0.91072 0.90381 0.94497 0.92739 0.78648 0.94069 0.94128 0.78709 0.89581 0.93181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.26 13.29 55.43 0.74 -25.53 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.54 -14.79 9.28 -34.44 -0.32 -15.11 16 8 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 9 C 0.25 6.73 5.43 -5.19 -0.03 6.70 16 10 N -0.72 -15.11 5.55 -61.47 -0.34 -15.45 16 11 C 0.50 10.04 7.68 -10.98 -0.08 9.96 16 12 O -0.54 -13.12 15.23 5.56 0.08 -13.03 16 13 C 0.02 0.34 5.32 -4.97 -0.03 0.31 16 14 N -0.49 -7.00 4.97 -231.26 -1.15 -8.15 16 15 C 0.03 0.44 5.93 -2.09 -0.01 0.43 16 16 C -0.10 -1.27 5.86 -25.35 -0.15 -1.42 16 17 C -0.06 -0.67 0.73 -153.12 -0.11 -0.78 16 18 C 0.10 1.02 5.65 37.16 0.21 1.23 16 19 O -0.55 -6.08 11.35 -56.54 -0.64 -6.73 16 20 C 0.09 0.85 5.67 37.16 0.21 1.06 16 21 O -0.55 -5.46 11.35 -56.54 -0.64 -6.10 16 22 C 0.04 0.46 5.55 -2.18 -0.01 0.45 16 23 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 24 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.39 6.94 8.32 -40.82 -0.34 6.60 16 27 H 0.10 1.19 8.08 -51.93 -0.42 0.77 16 28 H 0.06 0.75 7.77 -51.93 -0.40 0.35 16 29 H 0.04 0.52 7.75 -51.93 -0.40 0.12 16 30 H 0.10 1.67 7.24 -51.93 -0.38 1.29 16 31 H 0.07 0.89 7.53 -51.93 -0.39 0.49 16 32 H 0.08 1.11 7.52 -51.93 -0.39 0.72 16 33 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.37 2.53 9.12 45.56 0.42 2.95 16 36 H 0.04 0.34 8.13 -51.93 -0.42 -0.08 16 37 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.37 2.03 9.12 45.56 0.42 2.45 16 39 H 0.09 0.83 7.86 -51.93 -0.41 0.42 16 40 H 0.05 0.46 7.71 -51.93 -0.40 0.06 16 LS Contribution 327.91 15.07 4.94 4.94 Total: -1.00 -35.21 327.91 -7.22 -42.43 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -4.77 Total: 7.26 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: -0.42 Total: 4.49 kcal Atomic # 7 Polarization: -48.38 SS G_CDS: -0.76 Total: -49.13 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -1.20 Total: -25.86 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -35.21 -7.22 -42.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694727069.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.845 kcal (2) G-P(sol) polarization free energy of solvation -35.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds