Wall clock time and date at job start Mon Mar 30 2020 04:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86806 * 119.99679 * 2 1 4 4 H 1.48499 * 109.46885 * 270.00228 * 3 2 1 5 5 H 1.48499 * 109.47101 * 29.99830 * 3 2 1 6 6 H 1.48499 * 109.46902 * 150.00477 * 3 2 1 7 7 C 1.37875 * 120.00445 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00383 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99619 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.46747 * 179.97438 * 9 7 2 11 11 C 1.34772 * 119.99845 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00400 * 0.02562 * 11 10 9 13 13 C 1.50707 * 120.00164 * 180.02562 * 11 10 9 14 14 N 1.46900 * 109.46999 * 180.02562 * 13 11 10 15 15 C 1.48720 * 111.01831 * 74.48981 * 14 13 11 16 16 C 1.54381 * 104.51692 * 158.96284 * 15 14 13 17 17 C 1.54257 * 105.14978 * 336.27274 * 16 15 14 18 18 C 1.53002 * 110.32776 * 118.84533 * 17 16 15 19 19 O 1.42900 * 109.46811 * 61.45002 * 18 17 16 20 20 C 1.53009 * 110.32339 * 240.95010 * 17 16 15 21 21 O 1.42900 * 109.46692 * 298.54705 * 20 17 16 22 22 C 1.48567 * 110.99718 * 189.99963 * 14 13 11 23 23 H 0.96999 * 120.00189 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47188 * 60.00339 * 9 7 2 25 25 H 1.08997 * 109.46903 * 299.99682 * 9 7 2 26 26 H 0.97001 * 120.00337 * 0.02562 * 10 9 7 27 27 H 1.08997 * 109.47211 * 59.99899 * 13 11 10 28 28 H 1.08999 * 109.46541 * 300.00089 * 13 11 10 29 29 H 1.09004 * 110.38960 * 40.24251 * 15 14 13 30 30 H 1.08996 * 110.50963 * 277.74694 * 15 14 13 31 31 H 1.09002 * 110.32526 * 217.32092 * 16 15 14 32 32 H 1.08998 * 110.32190 * 95.21733 * 16 15 14 33 33 H 1.08998 * 109.47221 * 181.45249 * 18 17 16 34 34 H 1.08996 * 109.46887 * 301.45306 * 18 17 16 35 35 H 0.96703 * 113.99733 * 180.02562 * 19 18 17 36 36 H 1.09001 * 109.46885 * 58.54444 * 20 17 16 37 37 H 1.08994 * 109.47500 * 178.54660 * 20 17 16 38 38 H 0.96700 * 114.00032 * 179.97438 * 21 20 17 39 39 H 1.08999 * 110.41133 * 82.17552 * 22 14 13 40 40 H 1.09001 * 110.41003 * 319.73948 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 1.7540 -4.8832 0.0011 12 8 0.5617 -5.1050 0.0011 13 6 2.7334 -6.0287 0.0016 14 7 1.9989 -7.3009 0.0015 15 6 1.4113 -7.5774 -1.3364 16 6 1.1707 -9.1024 -1.3457 17 6 2.1585 -9.6727 -0.3072 18 6 1.3984 -10.3767 0.8187 19 8 0.6512 -11.4685 0.2787 20 6 3.1327 -10.6436 -0.9776 21 8 2.4043 -11.7384 -1.5372 22 6 2.9156 -8.4449 0.2429 23 1 -0.4850 0.8400 0.0004 24 1 0.6249 -2.5571 -0.8897 25 1 0.6242 -2.5567 0.8903 26 1 3.1569 -3.4353 0.0009 27 1 3.3600 -5.9706 0.8916 28 1 3.3601 -5.9712 -0.8883 29 1 2.1114 -7.2982 -2.1238 30 1 0.4689 -7.0432 -1.4574 31 1 1.3809 -9.5128 -2.3334 32 1 0.1444 -9.3255 -1.0543 33 1 2.1075 -10.7514 1.5568 34 1 0.7178 -9.6706 1.2944 35 1 0.1431 -11.9613 0.9375 36 1 3.6750 -10.1258 -1.7687 37 1 3.8396 -11.0181 -0.2374 38 1 2.9595 -12.3949 -1.9798 39 1 3.1049 -8.5617 1.3100 40 1 3.8518 -8.3022 -0.2968 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694727069.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:26 Heat of formation + Delta-G solvation = -161.552229 kcal Electronic energy + Delta-G solvation = -21272.596900 eV Core-core repulsion = 17893.005828 eV Total energy + Delta-G solvation = -3379.591073 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.09973 -39.99933 -37.52771 -36.86520 -36.07555 -34.34945 -33.67849 -30.85280 -29.80131 -27.81341 -26.68179 -25.22657 -24.30395 -22.47032 -21.31504 -20.13105 -18.90132 -18.28255 -17.77665 -17.52723 -17.25884 -16.84665 -16.55631 -16.32048 -15.82499 -15.57385 -15.03181 -14.96327 -14.41408 -14.35482 -13.95641 -13.90344 -13.59959 -13.16201 -13.12411 -12.90891 -12.71220 -12.59702 -12.34944 -12.22244 -12.02586 -11.90119 -11.48441 -11.33137 -10.80172 -10.75222 -10.66198 -10.65534 -9.80359 -9.43831 -8.29047 -6.46009 1.42955 1.45633 1.56915 1.82903 2.27296 2.46518 3.05721 3.07378 3.13959 3.49357 3.61005 3.95238 4.04028 4.16412 4.28253 4.28818 4.33259 4.39027 4.51002 4.57837 4.59302 4.65803 4.70666 4.82814 4.94199 5.09546 5.12122 5.18550 5.24438 5.26508 5.49858 5.69834 5.81622 5.85480 5.93890 6.65768 6.97515 7.02712 7.08656 7.24012 7.56516 8.83280 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.052604 B = 0.003027 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.152691 B = 9248.383921 C = 9422.697415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.986 3.014 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.254 1.254 7 C -0.555 4.555 8 H 0.086 0.914 9 C 0.269 3.731 10 N -0.710 5.710 11 C 0.493 3.507 12 O -0.588 6.588 13 C 0.039 3.961 14 N -0.515 5.515 15 C 0.033 3.967 16 C -0.092 4.092 17 C -0.064 4.064 18 C 0.097 3.903 19 O -0.568 6.568 20 C 0.096 3.904 21 O -0.570 6.570 22 C 0.049 3.951 23 H 0.268 0.732 24 H -0.017 1.017 25 H -0.016 1.016 26 H 0.408 0.592 27 H 0.133 0.867 28 H 0.092 0.908 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.052 0.948 33 H 0.059 0.941 34 H 0.033 0.967 35 H 0.384 0.616 36 H 0.052 0.948 37 H 0.061 0.939 38 H 0.386 0.614 39 H 0.102 0.898 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.974 -22.197 -0.247 25.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.198 4.198 3 Si 0.809 3.191 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.177 1.177 7 C -0.593 4.593 8 H 0.104 0.896 9 C 0.146 3.854 10 N -0.361 5.361 11 C 0.280 3.720 12 O -0.469 6.469 13 C -0.092 4.092 14 N -0.239 5.239 15 C -0.095 4.095 16 C -0.130 4.130 17 C -0.064 4.064 18 C 0.019 3.981 19 O -0.374 6.374 20 C 0.018 3.982 21 O -0.376 6.376 22 C -0.078 4.078 23 H 0.077 0.923 24 H 0.001 0.999 25 H 0.002 0.998 26 H 0.244 0.756 27 H 0.151 0.849 28 H 0.110 0.890 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.092 0.908 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.052 0.948 35 H 0.232 0.768 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.234 0.766 39 H 0.120 0.880 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 11.338 -21.632 -0.130 24.423 hybrid contribution 0.679 0.760 -0.329 1.071 sum 12.016 -20.872 -0.459 24.089 Atomic orbital electron populations 1.70149 1.08367 1.28554 1.50062 1.26105 0.95772 1.04030 0.93878 0.85139 0.78522 0.76851 0.78586 1.19621 1.21048 1.17720 1.21634 0.94353 0.90530 1.52761 0.89647 1.18483 0.88710 0.84468 0.93783 1.46171 1.11120 1.05464 1.73389 1.21405 0.90021 0.84795 0.75812 1.90640 1.19454 1.85344 1.51421 1.22138 0.93898 0.87538 1.05645 1.65055 1.29315 1.00890 1.28647 1.23177 0.99677 0.96840 0.89757 1.22099 0.99345 0.92265 0.99314 1.21391 0.95523 0.94140 0.95393 1.22039 0.94042 0.88116 0.93912 1.86632 1.65708 1.45903 1.39160 1.22073 0.92008 0.87574 0.96530 1.86679 1.38135 1.36148 1.76621 1.23138 0.94317 0.87517 1.02860 0.92283 0.99859 0.99779 0.75580 0.84949 0.89041 0.92948 0.92901 0.90791 0.92949 0.92243 0.94829 0.76845 0.92955 0.92039 0.76576 0.88012 0.90453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.01 13.29 21.45 0.28 -56.73 16 2 C 0.00 0.09 5.46 84.65 0.46 0.55 16 3 Si 0.99 42.38 29.54 68.60 2.03 44.41 16 4 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 5 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 6 H -0.25 -10.05 7.11 99.48 0.71 -9.34 16 7 C -0.56 -30.34 9.28 25.60 0.24 -30.10 16 8 H 0.09 4.17 7.60 -2.91 -0.02 4.15 16 9 C 0.27 14.98 5.43 85.63 0.46 15.45 16 10 N -0.71 -30.04 5.55 -466.79 -2.59 -32.63 16 11 C 0.49 19.95 7.68 87.66 0.67 20.62 16 12 O -0.59 -30.25 15.23 -3.03 -0.05 -30.30 16 13 C 0.04 1.02 5.32 85.56 0.46 1.47 16 14 N -0.51 -14.07 4.97 -885.58 -4.41 -18.48 16 15 C 0.03 0.97 5.93 86.42 0.51 1.48 16 16 C -0.09 -2.35 5.86 31.49 0.18 -2.16 16 17 C -0.06 -1.25 0.73 -51.28 -0.04 -1.29 16 18 C 0.10 1.92 5.65 71.98 0.41 2.33 16 19 O -0.57 -12.05 11.35 -128.60 -1.46 -13.51 16 20 C 0.10 1.43 5.67 71.99 0.41 1.84 16 21 O -0.57 -10.07 11.35 -128.60 -1.46 -11.53 16 22 C 0.05 0.87 5.55 86.45 0.48 1.35 16 23 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 24 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 25 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 26 H 0.41 13.87 8.32 -92.71 -0.77 13.10 16 27 H 0.13 2.62 8.08 -2.39 -0.02 2.60 16 28 H 0.09 1.89 7.77 -2.39 -0.02 1.87 16 29 H 0.05 1.34 7.75 -2.38 -0.02 1.33 16 30 H 0.05 1.97 7.24 -2.39 -0.02 1.95 16 31 H 0.07 1.81 7.53 -2.39 -0.02 1.79 16 32 H 0.05 1.57 7.52 -2.39 -0.02 1.56 16 33 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.38 4.98 9.12 -74.06 -0.68 4.31 16 36 H 0.05 0.67 8.13 -2.39 -0.02 0.65 16 37 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.39 3.31 9.12 -74.06 -0.68 2.63 16 39 H 0.10 1.54 7.86 -2.39 -0.02 1.52 16 40 H 0.08 1.01 7.71 -2.39 -0.02 0.99 16 Total: -1.00 -80.91 327.91 -4.46 -85.37 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: -1.06 Total: 21.85 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: 4.25 Total: 11.54 kcal Atomic # 7 Polarization: -101.12 SS G_CDS: -6.71 Total: -107.83 kcal Atomic # 8 Polarization: -52.37 SS G_CDS: -2.97 Total: -55.34 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -80.91 -4.46 -85.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694727069.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.182 kcal (2) G-P(sol) polarization free energy of solvation -80.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds