Wall clock time and date at job start Mon Mar 30 2020 04:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86807 * 119.99866 * 2 1 4 4 H 1.48497 * 109.47067 * 270.00113 * 3 2 1 5 5 H 1.48497 * 109.46738 * 30.00029 * 3 2 1 6 6 H 1.48501 * 109.46756 * 149.99871 * 3 2 1 7 7 C 1.37875 * 120.00176 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99695 * 0.02562 * 7 2 1 9 9 C 1.50692 * 120.00105 * 179.97438 * 7 2 1 10 10 N 1.46504 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34779 * 119.99916 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00180 * 0.02562 * 11 10 9 13 13 C 1.50705 * 119.99614 * 180.02562 * 11 10 9 14 14 N 1.46893 * 109.46848 * 184.45957 * 13 11 10 15 15 C 1.47019 * 111.00260 * 66.42183 * 14 13 11 16 16 C 1.53102 * 109.25837 * 182.39100 * 15 14 13 17 17 O 1.43018 * 109.29365 * 303.13062 * 16 15 14 18 18 C 1.43101 * 113.68739 * 58.64852 * 17 16 15 19 19 C 1.47012 * 111.00062 * 190.05976 * 14 13 11 20 20 H 1.08999 * 109.50764 * 297.58433 * 19 14 13 21 21 C 1.52998 * 109.50669 * 57.67180 * 19 14 13 22 22 C 1.52999 * 109.47266 * 181.93956 * 21 19 14 23 23 O 1.42896 * 109.47431 * 174.79189 * 22 21 19 24 24 H 0.96994 * 119.99868 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47244 * 60.00655 * 9 7 2 26 26 H 1.09001 * 109.47744 * 300.00505 * 9 7 2 27 27 H 0.97003 * 119.99661 * 0.02562 * 10 9 7 28 28 H 1.08999 * 109.47361 * 64.45738 * 13 11 10 29 29 H 1.08998 * 109.46745 * 304.45420 * 13 11 10 30 30 H 1.08998 * 109.50434 * 62.45826 * 15 14 13 31 31 H 1.08994 * 109.54667 * 302.35021 * 15 14 13 32 32 H 1.08996 * 109.50463 * 63.08900 * 16 15 14 33 33 H 1.08993 * 109.50322 * 183.17544 * 16 15 14 34 34 H 1.08997 * 109.49173 * 181.41648 * 18 17 16 35 35 H 1.09000 * 109.52877 * 61.32283 * 18 17 16 36 36 H 1.09007 * 109.46882 * 301.93664 * 21 19 14 37 37 H 1.08993 * 109.47440 * 61.93966 * 21 19 14 38 38 H 1.09001 * 109.47054 * 294.79023 * 22 21 19 39 39 H 1.09000 * 109.47350 * 54.78932 * 22 21 19 40 40 H 0.96697 * 114.00426 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 7 3.9999 -2.5752 0.0001 11 6 5.3251 -2.8214 0.0001 12 8 6.1131 -1.8996 0.0006 13 6 5.8274 -4.2423 -0.0003 14 7 7.2924 -4.2437 0.1075 15 6 7.7250 -3.7284 1.4147 16 6 9.2548 -3.6913 1.4618 17 8 9.7675 -5.0006 1.2001 18 6 9.3654 -5.5330 -0.0658 19 6 7.8367 -5.5888 -0.1283 20 1 7.4652 -6.2710 0.6363 21 6 7.3996 -6.0820 -1.5091 22 6 7.9260 -7.5008 -1.7341 23 8 7.4177 -8.0072 -2.9699 24 1 -0.4850 0.8400 -0.0004 25 1 3.8752 -0.6797 0.8895 26 1 3.8746 -0.6807 -0.8904 27 1 3.3696 -3.3125 0.0001 28 1 5.5309 -4.7323 -0.9277 29 1 5.4002 -4.7789 0.8468 30 1 7.3523 -4.3807 2.2045 31 1 7.3319 -2.7220 1.5582 32 1 9.6254 -2.9978 0.7070 33 1 9.5807 -3.3634 2.4488 34 1 9.7714 -6.5378 -0.1832 35 1 9.7393 -4.8936 -0.8654 36 1 6.3110 -6.0851 -1.5659 37 1 7.8015 -5.4196 -2.2756 38 1 9.0153 -7.4828 -1.7694 39 1 7.5996 -8.1435 -0.9164 40 1 7.7110 -8.9049 -3.1775 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694956464.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:22 Heat of formation + Delta-G solvation = -123.206105 kcal Electronic energy + Delta-G solvation = -21497.113077 eV Core-core repulsion = 18119.184817 eV Total energy + Delta-G solvation = -3377.928260 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.25205 -38.66053 -37.33211 -35.79516 -34.29784 -33.15407 -32.37538 -29.85586 -28.74103 -27.53054 -25.00536 -24.50366 -21.95995 -21.81921 -20.28942 -19.84013 -17.84605 -17.41009 -16.57793 -16.45118 -16.07269 -15.75071 -15.27454 -15.07244 -14.95073 -14.47171 -14.33526 -13.87306 -13.65821 -13.55852 -13.14686 -12.74853 -12.35039 -12.29467 -12.11111 -11.86306 -11.42486 -11.31036 -11.14051 -11.02076 -10.74765 -10.63668 -10.25669 -9.98410 -9.79819 -9.50947 -9.16840 -8.78863 -8.41920 -8.14146 -6.22658 -4.25090 3.20142 3.26228 3.30408 3.34609 3.40823 3.65674 3.90545 4.21594 4.32501 4.45535 4.77018 4.81239 4.88729 4.94249 5.01333 5.11310 5.12523 5.16407 5.27483 5.33499 5.40686 5.47033 5.50283 5.57785 5.77644 5.82248 5.89904 6.00231 6.70541 6.83345 6.86052 7.01032 7.05835 7.21776 7.30034 7.37937 8.12826 8.50147 8.74214 8.92952 9.37440 10.89309 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.023350 B = 0.003998 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.831212 B = 7002.138549 C = 7900.790505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.544 4.544 8 H 0.079 0.921 9 C 0.222 3.778 10 N -0.707 5.707 11 C 0.501 3.499 12 O -0.541 6.541 13 C 0.029 3.971 14 N -0.511 5.511 15 C 0.016 3.984 16 C 0.066 3.934 17 O -0.388 6.388 18 C 0.068 3.932 19 C 0.053 3.947 20 H 0.052 0.948 21 C -0.119 4.119 22 C 0.076 3.924 23 O -0.573 6.573 24 H 0.268 0.732 25 H 0.024 0.976 26 H 0.021 0.979 27 H 0.396 0.604 28 H 0.108 0.892 29 H 0.060 0.940 30 H 0.037 0.963 31 H 0.107 0.893 32 H 0.063 0.937 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.062 0.938 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.048 0.952 39 H 0.046 0.954 40 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.452 -15.528 0.006 23.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.126 4.126 3 Si 0.704 3.296 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.582 4.582 8 H 0.097 0.903 9 C 0.100 3.900 10 N -0.357 5.357 11 C 0.286 3.714 12 O -0.419 6.419 13 C -0.102 4.102 14 N -0.236 5.236 15 C -0.112 4.112 16 C -0.011 4.011 17 O -0.307 6.307 18 C -0.009 4.009 19 C -0.056 4.056 20 H 0.070 0.930 21 C -0.156 4.156 22 C -0.002 4.002 23 O -0.378 6.378 24 H 0.078 0.922 25 H 0.042 0.958 26 H 0.039 0.961 27 H 0.229 0.771 28 H 0.126 0.874 29 H 0.078 0.922 30 H 0.056 0.944 31 H 0.125 0.875 32 H 0.081 0.919 33 H 0.116 0.884 34 H 0.113 0.887 35 H 0.081 0.919 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 17.853 -13.901 -0.226 22.628 hybrid contribution -0.412 -0.422 0.453 0.743 sum 17.441 -14.323 0.226 22.570 Atomic orbital electron populations 1.69883 1.06222 1.27442 1.49425 1.24800 0.94789 0.99184 0.93841 0.86807 0.80524 0.83210 0.79078 1.19821 1.20906 1.18540 1.21095 0.88547 0.95227 1.53345 0.90272 1.19472 0.95193 0.78592 0.96735 1.46184 1.05614 1.11072 1.72784 1.20297 0.83095 0.90472 0.77572 1.90625 1.55313 1.45957 1.50040 1.22136 0.88505 0.96153 1.03409 1.61810 1.08425 1.21505 1.31887 1.22940 0.96693 1.02860 0.88707 1.22679 0.92222 0.84309 1.01919 1.87976 1.73249 1.32653 1.36777 1.22761 0.92141 0.99421 0.86552 1.22228 0.96534 0.90049 0.96825 0.93033 1.21589 1.02564 0.94987 0.96504 1.22185 0.97104 0.94956 0.85930 1.86498 1.75551 1.35505 1.40246 0.92249 0.95783 0.96144 0.77094 0.87429 0.92160 0.94440 0.87463 0.91871 0.88422 0.88656 0.91931 0.90250 0.89834 0.93392 0.93586 0.77346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.50 13.96 55.43 0.77 -25.72 16 2 C 0.08 2.19 5.47 -17.82 -0.10 2.10 16 3 Si 0.88 21.46 27.47 -169.99 -4.67 16.79 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 6 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 7 C -0.54 -14.91 9.83 -34.45 -0.34 -15.25 16 8 H 0.08 2.25 7.84 -52.48 -0.41 1.84 16 9 C 0.22 5.45 4.50 -5.20 -0.02 5.42 16 10 N -0.71 -14.16 5.55 -61.47 -0.34 -14.50 16 11 C 0.50 9.39 7.44 -10.98 -0.08 9.31 16 12 O -0.54 -12.01 14.58 5.56 0.08 -11.93 16 13 C 0.03 0.40 5.23 -4.98 -0.03 0.37 16 14 N -0.51 -6.93 4.24 -227.78 -0.97 -7.90 16 15 C 0.02 0.21 5.30 -3.71 -0.02 0.19 16 16 C 0.07 0.77 7.01 37.21 0.26 1.03 16 17 O -0.39 -4.66 10.83 -35.23 -0.38 -5.04 16 18 C 0.07 0.68 5.90 37.21 0.22 0.90 16 19 C 0.05 0.56 2.09 -67.60 -0.14 0.42 16 20 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 21 C -0.12 -1.17 4.88 -26.73 -0.13 -1.30 16 22 C 0.08 0.59 6.60 37.16 0.25 0.83 16 23 O -0.57 -5.02 13.66 -35.23 -0.48 -5.50 16 24 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 25 H 0.02 0.62 7.20 -51.93 -0.37 0.25 16 26 H 0.02 0.53 7.57 -51.93 -0.39 0.13 16 27 H 0.40 6.96 8.32 -40.82 -0.34 6.62 16 28 H 0.11 1.33 5.71 -51.93 -0.30 1.03 16 29 H 0.06 0.74 8.12 -51.93 -0.42 0.31 16 30 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.11 1.71 6.05 -51.93 -0.31 1.39 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.10 0.72 6.78 -51.93 -0.35 0.37 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.84 6.06 -51.93 -0.31 0.52 16 37 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.05 0.30 6.84 -51.93 -0.36 -0.06 16 39 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 40 H 0.38 1.50 9.12 45.56 0.42 1.91 16 LS Contribution 320.20 15.07 4.83 4.83 Total: -1.00 -33.82 320.20 -6.58 -40.39 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -5.28 Total: 4.55 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: -0.13 Total: 4.03 kcal Atomic # 7 Polarization: -47.59 SS G_CDS: -0.53 Total: -48.12 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: -0.78 Total: -22.47 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.82 -6.58 -40.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694956464.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.812 kcal (2) G-P(sol) polarization free energy of solvation -33.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds