Wall clock time and date at job start Mon Mar 30 2020 04:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86807 * 119.99866 * 2 1 4 4 H 1.48497 * 109.47067 * 270.00113 * 3 2 1 5 5 H 1.48497 * 109.46738 * 30.00029 * 3 2 1 6 6 H 1.48501 * 109.46756 * 149.99871 * 3 2 1 7 7 C 1.37875 * 120.00176 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99695 * 0.02562 * 7 2 1 9 9 C 1.50692 * 120.00105 * 179.97438 * 7 2 1 10 10 N 1.46504 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34779 * 119.99916 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00180 * 0.02562 * 11 10 9 13 13 C 1.50705 * 119.99614 * 180.02562 * 11 10 9 14 14 N 1.46893 * 109.46848 * 184.45957 * 13 11 10 15 15 C 1.47019 * 111.00260 * 66.42183 * 14 13 11 16 16 C 1.53102 * 109.25837 * 182.39100 * 15 14 13 17 17 O 1.43018 * 109.29365 * 303.13062 * 16 15 14 18 18 C 1.43101 * 113.68739 * 58.64852 * 17 16 15 19 19 C 1.47012 * 111.00062 * 190.05976 * 14 13 11 20 20 H 1.08999 * 109.50764 * 297.58433 * 19 14 13 21 21 C 1.52998 * 109.50669 * 57.67180 * 19 14 13 22 22 C 1.52999 * 109.47266 * 181.93956 * 21 19 14 23 23 O 1.42896 * 109.47431 * 174.79189 * 22 21 19 24 24 H 0.96994 * 119.99868 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47244 * 60.00655 * 9 7 2 26 26 H 1.09001 * 109.47744 * 300.00505 * 9 7 2 27 27 H 0.97003 * 119.99661 * 0.02562 * 10 9 7 28 28 H 1.08999 * 109.47361 * 64.45738 * 13 11 10 29 29 H 1.08998 * 109.46745 * 304.45420 * 13 11 10 30 30 H 1.08998 * 109.50434 * 62.45826 * 15 14 13 31 31 H 1.08994 * 109.54667 * 302.35021 * 15 14 13 32 32 H 1.08996 * 109.50463 * 63.08900 * 16 15 14 33 33 H 1.08993 * 109.50322 * 183.17544 * 16 15 14 34 34 H 1.08997 * 109.49173 * 181.41648 * 18 17 16 35 35 H 1.09000 * 109.52877 * 61.32283 * 18 17 16 36 36 H 1.09007 * 109.46882 * 301.93664 * 21 19 14 37 37 H 1.08993 * 109.47440 * 61.93966 * 21 19 14 38 38 H 1.09001 * 109.47054 * 294.79023 * 22 21 19 39 39 H 1.09000 * 109.47350 * 54.78932 * 22 21 19 40 40 H 0.96697 * 114.00426 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 7 3.9999 -2.5752 0.0001 11 6 5.3251 -2.8214 0.0001 12 8 6.1131 -1.8996 0.0006 13 6 5.8274 -4.2423 -0.0003 14 7 7.2924 -4.2437 0.1075 15 6 7.7250 -3.7284 1.4147 16 6 9.2548 -3.6913 1.4618 17 8 9.7675 -5.0006 1.2001 18 6 9.3654 -5.5330 -0.0658 19 6 7.8367 -5.5888 -0.1283 20 1 7.4652 -6.2710 0.6363 21 6 7.3996 -6.0820 -1.5091 22 6 7.9260 -7.5008 -1.7341 23 8 7.4177 -8.0072 -2.9699 24 1 -0.4850 0.8400 -0.0004 25 1 3.8752 -0.6797 0.8895 26 1 3.8746 -0.6807 -0.8904 27 1 3.3696 -3.3125 0.0001 28 1 5.5309 -4.7323 -0.9277 29 1 5.4002 -4.7789 0.8468 30 1 7.3523 -4.3807 2.2045 31 1 7.3319 -2.7220 1.5582 32 1 9.6254 -2.9978 0.7070 33 1 9.5807 -3.3634 2.4488 34 1 9.7714 -6.5378 -0.1832 35 1 9.7393 -4.8936 -0.8654 36 1 6.3110 -6.0851 -1.5659 37 1 7.8015 -5.4196 -2.2756 38 1 9.0153 -7.4828 -1.7694 39 1 7.5996 -8.1435 -0.9164 40 1 7.7110 -8.9049 -3.1775 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694956464.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:22 Heat of formation + Delta-G solvation = -153.348462 kcal Electronic energy + Delta-G solvation = -21498.420148 eV Core-core repulsion = 18119.184817 eV Total energy + Delta-G solvation = -3379.235331 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.32550 -40.04209 -37.97603 -36.81235 -36.07327 -34.41808 -34.02463 -31.14643 -29.92963 -28.90055 -26.12712 -25.36675 -23.83291 -22.64804 -21.57692 -21.04467 -19.21553 -18.50717 -17.89211 -17.45686 -17.31115 -16.83281 -16.74717 -16.13071 -16.11360 -15.81299 -15.49210 -15.20471 -14.84255 -14.53800 -14.40795 -14.35242 -14.00828 -13.69370 -13.11311 -13.04011 -12.77220 -12.65570 -12.28331 -12.19870 -11.96794 -11.94485 -11.67097 -11.50624 -10.93016 -10.92414 -10.77473 -10.54529 -9.92535 -9.41743 -8.41159 -6.48278 1.31949 1.34095 1.46412 1.71340 2.17162 2.27231 2.79247 2.84977 2.94293 3.39115 3.65447 3.79206 4.00756 4.05481 4.10520 4.15906 4.21251 4.34442 4.36403 4.44485 4.46111 4.60901 4.72358 4.75322 4.77786 4.84077 4.92754 5.02031 5.06182 5.20257 5.25062 5.51541 5.74098 5.91732 6.08858 6.12563 6.52827 6.84722 6.95086 7.14887 7.41313 8.73628 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.023350 B = 0.003998 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.831212 B = 7002.138549 C = 7900.790505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.027 3.973 3 Si 0.938 3.062 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.260 1.260 7 C -0.548 4.548 8 H 0.059 0.941 9 C 0.235 3.765 10 N -0.708 5.708 11 C 0.500 3.500 12 O -0.577 6.577 13 C 0.041 3.959 14 N -0.531 5.531 15 C 0.018 3.982 16 C 0.070 3.930 17 O -0.395 6.395 18 C 0.065 3.935 19 C 0.059 3.941 20 H 0.063 0.937 21 C -0.116 4.116 22 C 0.079 3.921 23 O -0.597 6.597 24 H 0.272 0.728 25 H 0.012 0.988 26 H 0.009 0.991 27 H 0.408 0.592 28 H 0.126 0.874 29 H 0.084 0.916 30 H 0.046 0.954 31 H 0.078 0.922 32 H 0.052 0.948 33 H 0.115 0.885 34 H 0.126 0.874 35 H 0.056 0.944 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.061 0.939 40 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.002 -16.945 0.109 25.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.174 4.174 3 Si 0.762 3.238 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.185 1.185 7 C -0.585 4.585 8 H 0.077 0.923 9 C 0.111 3.889 10 N -0.358 5.358 11 C 0.287 3.713 12 O -0.457 6.457 13 C -0.089 4.089 14 N -0.257 5.257 15 C -0.110 4.110 16 C -0.007 4.007 17 O -0.314 6.314 18 C -0.011 4.011 19 C -0.050 4.050 20 H 0.080 0.920 21 C -0.154 4.154 22 C 0.001 3.999 23 O -0.406 6.406 24 H 0.082 0.918 25 H 0.030 0.970 26 H 0.027 0.973 27 H 0.243 0.757 28 H 0.144 0.856 29 H 0.102 0.898 30 H 0.064 0.936 31 H 0.096 0.904 32 H 0.071 0.929 33 H 0.133 0.867 34 H 0.144 0.856 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 19.415 -15.374 -0.130 24.765 hybrid contribution -0.891 -0.068 0.392 0.976 sum 18.524 -15.442 0.262 24.118 Atomic orbital electron populations 1.69982 1.07694 1.28629 1.50699 1.25601 0.95530 1.02669 0.93558 0.85851 0.79236 0.79334 0.79419 1.19087 1.19761 1.18475 1.21302 0.90005 0.94589 1.52642 0.92271 1.19057 0.93267 0.81053 0.95551 1.46036 1.06744 1.09698 1.73366 1.21140 0.81976 0.92345 0.75812 1.90609 1.56015 1.47743 1.51320 1.22049 0.89120 0.92446 1.05318 1.61772 1.08068 1.23744 1.32099 1.22853 0.97735 1.01376 0.89056 1.22653 0.91068 0.84353 1.02636 1.87971 1.73297 1.32423 1.37689 1.22957 0.91751 1.00807 0.85630 1.22260 0.96789 0.88470 0.97448 0.91952 1.21541 1.02014 0.96354 0.95498 1.22180 0.97995 0.93600 0.86148 1.86438 1.76148 1.37305 1.40740 0.91830 0.96964 0.97261 0.75674 0.85613 0.89819 0.93584 0.90410 0.92925 0.86675 0.85644 0.92552 0.91033 0.91486 0.91632 0.92040 0.75041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.78 13.96 21.45 0.30 -55.48 16 2 C 0.03 1.52 5.47 84.65 0.46 1.98 16 3 Si 0.94 44.30 27.47 68.60 1.88 46.19 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 5 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 6 H -0.26 -12.19 6.54 99.48 0.65 -11.54 16 7 C -0.55 -30.33 9.83 25.60 0.25 -30.08 16 8 H 0.06 3.44 7.84 -2.91 -0.02 3.41 16 9 C 0.23 11.55 4.50 85.63 0.38 11.93 16 10 N -0.71 -28.17 5.55 -466.78 -2.59 -30.76 16 11 C 0.50 18.51 7.44 87.66 0.65 19.16 16 12 O -0.58 -25.76 14.58 -3.03 -0.04 -25.80 16 13 C 0.04 1.07 5.23 85.56 0.45 1.52 16 14 N -0.53 -13.65 4.24 -874.55 -3.71 -17.35 16 15 C 0.02 0.46 5.30 86.31 0.46 0.91 16 16 C 0.07 1.56 7.01 72.02 0.50 2.07 16 17 O -0.40 -8.60 10.83 -148.98 -1.61 -10.21 16 18 C 0.07 1.14 5.90 72.01 0.42 1.56 16 19 C 0.06 1.10 2.09 44.93 0.09 1.19 16 20 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 21 C -0.12 -2.05 4.88 30.59 0.15 -1.90 16 22 C 0.08 0.97 6.60 71.98 0.48 1.45 16 23 O -0.60 -9.05 13.66 -148.98 -2.03 -11.08 16 24 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 25 H 0.01 0.64 7.20 -2.39 -0.02 0.62 16 26 H 0.01 0.49 7.57 -2.39 -0.02 0.47 16 27 H 0.41 14.14 8.32 -92.71 -0.77 13.37 16 28 H 0.13 2.86 5.71 -2.39 -0.01 2.84 16 29 H 0.08 1.83 8.12 -2.39 -0.02 1.81 16 30 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.08 2.49 6.05 -2.39 -0.01 2.48 16 32 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.13 1.42 6.78 -2.39 -0.02 1.41 16 35 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.07 1.36 6.06 -2.38 -0.01 1.34 16 37 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.07 0.58 6.84 -2.39 -0.02 0.56 16 39 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.40 2.14 9.12 -74.06 -0.68 1.46 16 Total: -1.00 -72.74 320.20 -3.94 -76.68 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: -0.44 Total: 18.02 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: 4.30 Total: 9.81 kcal Atomic # 7 Polarization: -97.60 SS G_CDS: -6.00 Total: -103.60 kcal Atomic # 8 Polarization: -43.41 SS G_CDS: -3.69 Total: -47.10 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.88 Total: 46.19 kcal Total: -72.74 -3.94 -76.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694956464.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.664 kcal (2) G-P(sol) polarization free energy of solvation -72.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds