Wall clock time and date at job start Mon Mar 30 2020 05:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46506 * 119.99766 * 2 1 4 4 C 1.50704 * 109.46813 * 269.99794 * 3 2 1 5 5 H 1.07997 * 120.00273 * 0.02562 * 4 3 2 6 6 C 1.37874 * 119.99759 * 179.97438 * 4 3 2 7 7 N 1.31516 * 120.00190 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 119.99971 * 179.97438 * 6 4 3 9 9 H 1.48508 * 109.47083 * 90.00352 * 8 6 4 10 10 H 1.48494 * 109.47424 * 210.00135 * 8 6 4 11 11 H 1.48498 * 109.46983 * 330.00465 * 8 6 4 12 12 C 1.34775 * 120.00456 * 179.97438 * 2 1 3 13 13 O 1.21274 * 120.00258 * 180.27919 * 12 2 1 14 14 C 1.50702 * 119.99465 * 0.02562 * 12 2 1 15 15 N 1.46908 * 109.46816 * 180.02562 * 14 12 2 16 16 C 1.47848 * 110.99629 * 289.54977 * 15 14 12 17 17 C 1.54906 * 104.79529 * 213.63671 * 16 15 14 18 18 H 1.08992 * 110.98928 * 278.97614 * 17 16 15 19 19 O 1.42900 * 111.01987 * 155.17541 * 17 16 15 20 20 C 1.55140 * 101.65139 * 37.07428 * 17 16 15 21 21 C 1.47439 * 111.00128 * 168.71330 * 15 14 12 22 22 H 1.08999 * 109.88937 * 242.66313 * 21 15 14 23 23 C 1.53004 * 109.88737 * 3.84621 * 21 15 14 24 24 O 1.42897 * 109.46953 * 174.99386 * 23 21 15 25 25 H 1.09002 * 109.47477 * 270.00008 * 1 2 3 26 26 H 1.08999 * 109.47710 * 30.00136 * 1 2 3 27 27 H 1.08998 * 109.47014 * 150.00250 * 1 2 3 28 28 H 1.08996 * 109.47145 * 29.99641 * 3 2 1 29 29 H 1.08996 * 109.47247 * 150.00001 * 3 2 1 30 30 H 0.96999 * 120.00225 * 179.97438 * 7 6 4 31 31 H 1.09002 * 109.46973 * 299.99279 * 14 12 2 32 32 H 1.08992 * 109.47441 * 60.00066 * 14 12 2 33 33 H 1.09007 * 110.37362 * 332.46957 * 16 15 14 34 34 H 1.09008 * 110.37016 * 94.80792 * 16 15 14 35 35 H 0.96707 * 113.99733 * 67.71916 * 19 17 16 36 36 H 1.09002 * 110.70236 * 205.95965 * 20 17 16 37 37 H 1.08997 * 110.70932 * 82.73020 * 20 17 16 38 38 H 1.09004 * 109.47271 * 294.99022 * 23 21 15 39 39 H 1.08995 * 109.47442 * 54.99224 * 23 21 15 40 40 H 0.96701 * 113.99873 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 -1.4209 5 1 2.0974 1.0962 -2.2417 6 6 3.1259 2.8780 -1.6728 7 7 3.5531 3.6182 -0.6732 8 14 3.4378 3.4168 -3.4340 9 1 2.3076 4.2591 -3.9016 10 1 4.6977 4.2003 -3.4962 11 1 3.5560 2.2195 -4.3044 12 6 2.1389 -1.1671 0.0005 13 8 3.3517 -1.1671 0.0056 14 6 1.3854 -2.4722 0.0005 15 7 2.3401 -3.5888 0.0018 16 6 3.0364 -3.6919 -1.2984 17 6 3.2713 -5.2094 -1.5021 18 1 4.1456 -5.5473 -0.9459 19 8 3.3966 -5.5269 -2.8898 20 6 1.9694 -5.8103 -0.9099 21 6 1.6573 -4.8675 0.2712 22 1 2.0317 -5.2994 1.1993 23 6 0.1475 -4.6404 0.3711 24 8 -0.5148 -5.8984 0.5157 25 1 -0.3634 0.0000 1.0277 26 1 -0.3634 0.8899 -0.5138 27 1 -0.3633 -0.8900 -0.5138 28 1 1.6083 2.0284 0.5138 29 1 3.1498 1.1385 0.5138 30 1 4.0299 4.4441 -0.8505 31 1 0.7585 -2.5298 0.8904 32 1 0.7591 -2.5302 -0.8896 33 1 2.4100 -3.2942 -2.0970 34 1 3.9884 -3.1620 -1.2620 35 1 4.1955 -5.1725 -3.3038 36 1 2.1402 -6.8272 -0.5567 37 1 1.1648 -5.7866 -1.6449 38 1 -0.0693 -4.0141 1.2365 39 1 -0.2061 -4.1455 -0.5333 40 1 -1.4769 -5.8306 0.5847 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698161547.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:27 Heat of formation + Delta-G solvation = -110.624631 kcal Electronic energy + Delta-G solvation = -22002.760086 eV Core-core repulsion = 18625.377400 eV Total energy + Delta-G solvation = -3377.382686 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.21960 -38.46349 -36.96284 -35.76101 -34.73350 -32.66821 -31.42648 -29.86950 -28.17454 -26.44430 -25.37075 -24.93053 -22.68906 -21.30565 -20.05381 -18.49297 -17.76335 -17.46449 -16.58824 -16.39727 -15.71691 -15.68599 -15.24134 -14.97987 -14.50111 -13.96097 -13.88787 -13.64696 -13.12519 -12.94510 -12.50345 -12.46105 -12.29414 -12.18214 -11.87127 -11.68828 -11.51316 -11.23744 -11.12112 -10.88193 -10.60846 -10.57391 -10.20325 -10.15348 -10.03328 -9.64106 -8.95858 -8.45117 -8.23307 -7.64232 -6.05666 -4.10662 3.28227 3.34846 3.37494 3.42970 3.45276 3.92619 3.99173 4.39710 4.44337 4.49640 4.70087 4.82525 5.00640 5.04456 5.08166 5.15632 5.28894 5.32206 5.42287 5.47801 5.56000 5.62354 5.84693 5.87102 5.90866 6.04908 6.14907 6.21461 6.79092 6.88299 7.09133 7.33642 7.44307 7.53609 7.54339 7.90846 8.22093 8.41436 8.89327 9.11857 9.54601 11.02338 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.021917 B = 0.004826 C = 0.004274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.231438 B = 5800.983992 C = 6549.175993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.606 5.606 3 C 0.246 3.754 4 C -0.526 4.526 5 H 0.056 0.944 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.275 1.275 12 C 0.505 3.495 13 O -0.523 6.523 14 C 0.022 3.978 15 N -0.493 5.493 16 C 0.017 3.983 17 C 0.089 3.911 18 H 0.075 0.925 19 O -0.563 6.563 20 C -0.118 4.118 21 C 0.073 3.927 22 H 0.098 0.902 23 C 0.059 3.941 24 O -0.570 6.570 25 H 0.044 0.956 26 H 0.074 0.926 27 H 0.052 0.948 28 H 0.032 0.968 29 H 0.044 0.956 30 H 0.263 0.737 31 H 0.101 0.899 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.099 0.901 35 H 0.382 0.618 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.056 0.944 39 H 0.049 0.951 40 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.293 -16.370 1.107 18.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.339 5.339 3 C 0.127 3.873 4 C -0.565 4.565 5 H 0.074 0.926 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.210 1.210 11 H -0.200 1.200 12 C 0.290 3.710 13 O -0.398 6.398 14 C -0.109 4.109 15 N -0.219 5.219 16 C -0.111 4.111 17 C 0.029 3.971 18 H 0.093 0.907 19 O -0.368 6.368 20 C -0.156 4.156 21 C -0.035 4.035 22 H 0.116 0.884 23 C -0.020 4.020 24 O -0.375 6.375 25 H 0.063 0.937 26 H 0.093 0.907 27 H 0.071 0.929 28 H 0.050 0.950 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.119 0.881 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.117 0.883 35 H 0.229 0.771 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -7.133 -16.601 1.633 18.142 hybrid contribution -0.656 0.973 -1.647 2.023 sum -7.789 -15.627 -0.014 17.461 Atomic orbital electron populations 1.21623 0.81713 1.02398 1.00337 1.48154 1.06003 1.07801 1.71980 1.19275 0.92587 0.77966 0.97436 1.21418 1.36561 1.06241 0.92282 0.92616 1.24933 0.95355 0.96398 0.97394 1.69931 1.38367 1.14313 1.30717 0.86505 0.77710 0.78573 0.84669 1.20651 1.21044 1.19957 1.20081 0.88263 0.84574 0.78043 1.90653 1.13588 1.86815 1.48753 1.22429 0.94769 0.91330 1.02361 1.63513 1.25713 1.00891 1.31742 1.23813 1.01228 0.96501 0.89525 1.23019 0.98246 0.93648 0.82195 0.90735 1.86457 1.48388 1.78885 1.23074 1.22652 0.96776 0.99416 0.96781 1.22447 0.91118 0.90130 0.99804 0.88427 1.22898 0.93375 0.85690 1.00017 1.86454 1.23975 1.30253 1.96771 0.93728 0.90684 0.92916 0.95047 0.93771 0.92698 0.88130 0.92082 0.92851 0.88282 0.77060 0.90071 0.90403 0.92552 0.93261 0.77337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.28 10.24 59.84 0.61 1.89 16 2 N -0.61 -12.73 2.86 -182.96 -0.52 -13.25 16 3 C 0.25 6.44 5.16 -5.19 -0.03 6.42 16 4 C -0.53 -14.87 9.39 -34.44 -0.32 -15.20 16 5 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 7 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16 8 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 12 C 0.51 10.45 7.48 -10.99 -0.08 10.36 16 13 O -0.52 -13.08 14.72 5.56 0.08 -13.00 16 14 C 0.02 0.33 2.72 -4.97 -0.01 0.32 16 15 N -0.49 -7.34 4.84 -224.77 -1.09 -8.43 16 16 C 0.02 0.26 5.53 -2.30 -0.01 0.25 16 17 C 0.09 1.10 4.42 -24.59 -0.11 0.99 16 18 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 19 O -0.56 -6.84 13.47 -35.23 -0.47 -7.32 16 20 C -0.12 -1.40 5.81 -24.91 -0.14 -1.54 16 21 C 0.07 0.88 3.78 -66.73 -0.25 0.63 16 22 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 23 C 0.06 0.58 5.12 37.16 0.19 0.77 16 24 O -0.57 -5.32 13.24 -35.23 -0.47 -5.78 16 25 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 27 H 0.05 0.65 6.44 -51.93 -0.33 0.31 16 28 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 29 H 0.04 1.31 7.42 -51.93 -0.39 0.92 16 30 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.10 1.25 6.05 -51.93 -0.31 0.94 16 32 H 0.06 0.83 6.03 -51.93 -0.31 0.52 16 33 H 0.05 0.84 7.60 -51.92 -0.39 0.45 16 34 H 0.10 1.70 7.45 -51.92 -0.39 1.32 16 35 H 0.38 3.19 9.12 45.56 0.42 3.61 16 36 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.08 0.98 7.85 -51.93 -0.41 0.57 16 38 H 0.06 0.51 6.63 -51.93 -0.34 0.16 16 39 H 0.05 0.48 6.73 -51.93 -0.35 0.13 16 40 H 0.38 1.82 9.12 45.56 0.42 2.24 16 LS Contribution 323.64 15.07 4.88 4.88 Total: -1.00 -35.36 323.64 -6.61 -41.96 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -4.47 Total: 3.45 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: -0.26 Total: 6.54 kcal Atomic # 7 Polarization: -46.63 SS G_CDS: -0.87 Total: -47.50 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -0.86 Total: -26.10 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -35.36 -6.61 -41.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698161547.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.662 kcal (2) G-P(sol) polarization free energy of solvation -35.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds