Wall clock time and date at job start Mon Mar 30 2020 05:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46506 * 119.99766 * 2 1 4 4 C 1.50704 * 109.46813 * 269.99794 * 3 2 1 5 5 H 1.07997 * 120.00273 * 0.02562 * 4 3 2 6 6 C 1.37874 * 119.99759 * 179.97438 * 4 3 2 7 7 N 1.31516 * 120.00190 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 119.99971 * 179.97438 * 6 4 3 9 9 H 1.48508 * 109.47083 * 90.00352 * 8 6 4 10 10 H 1.48494 * 109.47424 * 210.00135 * 8 6 4 11 11 H 1.48498 * 109.46983 * 330.00465 * 8 6 4 12 12 C 1.34775 * 120.00456 * 179.97438 * 2 1 3 13 13 O 1.21274 * 120.00258 * 180.27919 * 12 2 1 14 14 C 1.50702 * 119.99465 * 0.02562 * 12 2 1 15 15 N 1.46908 * 109.46816 * 180.02562 * 14 12 2 16 16 C 1.47848 * 110.99629 * 289.54977 * 15 14 12 17 17 C 1.54906 * 104.79529 * 213.63671 * 16 15 14 18 18 H 1.08992 * 110.98928 * 278.97614 * 17 16 15 19 19 O 1.42900 * 111.01987 * 155.17541 * 17 16 15 20 20 C 1.55140 * 101.65139 * 37.07428 * 17 16 15 21 21 C 1.47439 * 111.00128 * 168.71330 * 15 14 12 22 22 H 1.08999 * 109.88937 * 242.66313 * 21 15 14 23 23 C 1.53004 * 109.88737 * 3.84621 * 21 15 14 24 24 O 1.42897 * 109.46953 * 174.99386 * 23 21 15 25 25 H 1.09002 * 109.47477 * 270.00008 * 1 2 3 26 26 H 1.08999 * 109.47710 * 30.00136 * 1 2 3 27 27 H 1.08998 * 109.47014 * 150.00250 * 1 2 3 28 28 H 1.08996 * 109.47145 * 29.99641 * 3 2 1 29 29 H 1.08996 * 109.47247 * 150.00001 * 3 2 1 30 30 H 0.96999 * 120.00225 * 179.97438 * 7 6 4 31 31 H 1.09002 * 109.46973 * 299.99279 * 14 12 2 32 32 H 1.08992 * 109.47441 * 60.00066 * 14 12 2 33 33 H 1.09007 * 110.37362 * 332.46957 * 16 15 14 34 34 H 1.09008 * 110.37016 * 94.80792 * 16 15 14 35 35 H 0.96707 * 113.99733 * 67.71916 * 19 17 16 36 36 H 1.09002 * 110.70236 * 205.95965 * 20 17 16 37 37 H 1.08997 * 110.70932 * 82.73020 * 20 17 16 38 38 H 1.09004 * 109.47271 * 294.99022 * 23 21 15 39 39 H 1.08995 * 109.47442 * 54.99224 * 23 21 15 40 40 H 0.96701 * 113.99873 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 -1.4209 5 1 2.0974 1.0962 -2.2417 6 6 3.1259 2.8780 -1.6728 7 7 3.5531 3.6182 -0.6732 8 14 3.4378 3.4168 -3.4340 9 1 2.3076 4.2591 -3.9016 10 1 4.6977 4.2003 -3.4962 11 1 3.5560 2.2195 -4.3044 12 6 2.1389 -1.1671 0.0005 13 8 3.3517 -1.1671 0.0056 14 6 1.3854 -2.4722 0.0005 15 7 2.3401 -3.5888 0.0018 16 6 3.0364 -3.6919 -1.2984 17 6 3.2713 -5.2094 -1.5021 18 1 4.1456 -5.5473 -0.9459 19 8 3.3966 -5.5269 -2.8898 20 6 1.9694 -5.8103 -0.9099 21 6 1.6573 -4.8675 0.2712 22 1 2.0317 -5.2994 1.1993 23 6 0.1475 -4.6404 0.3711 24 8 -0.5148 -5.8984 0.5157 25 1 -0.3634 0.0000 1.0277 26 1 -0.3634 0.8899 -0.5138 27 1 -0.3633 -0.8900 -0.5138 28 1 1.6083 2.0284 0.5138 29 1 3.1498 1.1385 0.5138 30 1 4.0299 4.4441 -0.8505 31 1 0.7585 -2.5298 0.8904 32 1 0.7591 -2.5302 -0.8896 33 1 2.4100 -3.2942 -2.0970 34 1 3.9884 -3.1620 -1.2620 35 1 4.1955 -5.1725 -3.3038 36 1 2.1402 -6.8272 -0.5567 37 1 1.1648 -5.7866 -1.6449 38 1 -0.0693 -4.0141 1.2365 39 1 -0.2061 -4.1455 -0.5333 40 1 -1.4769 -5.8306 0.5847 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698161547.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:27 Heat of formation + Delta-G solvation = -142.940361 kcal Electronic energy + Delta-G solvation = -22004.161402 eV Core-core repulsion = 18625.377400 eV Total energy + Delta-G solvation = -3378.784001 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.39409 -39.92050 -37.76127 -36.79127 -36.38907 -34.74277 -32.59715 -30.82109 -30.00893 -27.74476 -26.98761 -25.83729 -24.55860 -22.36001 -21.17299 -19.83475 -18.82347 -18.66897 -18.42478 -17.55449 -17.14443 -16.91110 -16.57686 -16.44581 -15.89319 -15.38029 -14.98347 -14.63440 -14.38786 -14.25921 -14.04390 -13.74581 -13.61213 -13.44238 -13.31347 -13.11696 -12.89570 -12.74327 -12.54133 -12.52684 -12.22102 -12.02689 -11.71262 -11.53797 -11.03780 -10.90419 -10.64949 -10.56503 -9.40795 -9.37352 -8.22956 -6.38101 1.35293 1.38282 1.48384 1.85607 2.17855 2.38607 2.71921 3.06378 3.21216 3.39814 3.49350 3.73021 3.82947 4.00911 4.05601 4.09418 4.17085 4.36082 4.41886 4.45199 4.48559 4.66893 4.72191 4.86817 4.91614 4.94581 4.97315 5.01635 5.21663 5.23294 5.55408 5.70842 5.83051 5.90949 6.05825 6.69899 6.74144 6.80909 6.90192 7.28380 7.52667 8.83948 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.021917 B = 0.004826 C = 0.004274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.231438 B = 5800.983992 C = 6549.175993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.614 5.614 3 C 0.261 3.739 4 C -0.542 4.542 5 H 0.051 0.949 6 C 0.008 3.992 7 N -0.928 5.928 8 Si 0.967 3.033 9 H -0.263 1.263 10 H -0.281 1.281 11 H -0.274 1.274 12 C 0.493 3.507 13 O -0.579 6.579 14 C 0.039 3.961 15 N -0.513 5.513 16 C 0.021 3.979 17 C 0.096 3.904 18 H 0.082 0.918 19 O -0.573 6.573 20 C -0.112 4.112 21 C 0.073 3.927 22 H 0.099 0.901 23 C 0.063 3.937 24 O -0.582 6.582 25 H 0.074 0.926 26 H 0.066 0.934 27 H 0.091 0.909 28 H 0.024 0.976 29 H -0.004 1.004 30 H 0.267 0.733 31 H 0.135 0.865 32 H 0.084 0.916 33 H 0.042 0.958 34 H 0.065 0.935 35 H 0.396 0.604 36 H 0.091 0.909 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.055 0.945 40 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.423 -17.789 0.399 20.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.346 5.346 3 C 0.139 3.861 4 C -0.580 4.580 5 H 0.069 0.931 6 C -0.191 4.191 7 N -0.568 5.568 8 Si 0.792 3.208 9 H -0.187 1.187 10 H -0.206 1.206 11 H -0.199 1.199 12 C 0.281 3.719 13 O -0.459 6.459 14 C -0.092 4.092 15 N -0.239 5.239 16 C -0.107 4.107 17 C 0.037 3.963 18 H 0.100 0.900 19 O -0.380 6.380 20 C -0.150 4.150 21 C -0.035 4.035 22 H 0.117 0.883 23 C -0.015 4.015 24 O -0.390 6.390 25 H 0.092 0.908 26 H 0.084 0.916 27 H 0.109 0.891 28 H 0.042 0.958 29 H 0.014 0.986 30 H 0.076 0.924 31 H 0.152 0.848 32 H 0.101 0.899 33 H 0.060 0.940 34 H 0.084 0.916 35 H 0.246 0.754 36 H 0.110 0.890 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.073 0.927 40 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -9.331 -18.039 0.926 20.331 hybrid contribution 0.008 1.384 -1.376 1.952 sum -9.323 -16.655 -0.450 19.092 Atomic orbital electron populations 1.21947 0.77912 1.03910 1.02741 1.48182 1.08393 1.06271 1.71786 1.18725 0.91083 0.80368 0.95922 1.21679 1.36853 1.06479 0.93001 0.93058 1.25852 0.94900 0.96440 1.01914 1.70051 1.38944 1.14790 1.33033 0.85422 0.78119 0.78180 0.79114 1.18747 1.20630 1.19877 1.21187 0.88045 0.86210 0.76415 1.90625 1.16346 1.87786 1.51121 1.22362 0.94119 0.87852 1.04870 1.63364 1.26741 1.02220 1.31597 1.23660 0.99546 0.98046 0.89488 1.22963 0.99117 0.91705 0.82564 0.90009 1.86423 1.49635 1.78933 1.22994 1.22622 0.95995 0.99854 0.96507 1.22474 0.92850 0.88396 0.99757 0.88321 1.22763 0.91661 0.86207 1.00890 1.86403 1.25929 1.29891 1.96783 0.90796 0.91558 0.89054 0.95846 0.98555 0.92394 0.84764 0.89865 0.93965 0.91640 0.75385 0.89021 0.90812 0.91167 0.92681 0.74930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.17 10.24 127.77 1.31 3.48 16 2 N -0.61 -25.79 2.86 -851.14 -2.43 -28.22 16 3 C 0.26 14.15 5.16 85.63 0.44 14.59 16 4 C -0.54 -31.33 9.39 25.60 0.24 -31.09 16 5 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 6 C 0.01 0.46 5.46 84.65 0.46 0.92 16 7 N -0.93 -56.43 13.29 21.45 0.28 -56.15 16 8 Si 0.97 44.97 29.54 68.60 2.03 47.00 16 9 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 10 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 11 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 12 C 0.49 20.49 7.48 87.66 0.66 21.14 16 13 O -0.58 -30.32 14.72 -3.01 -0.04 -30.36 16 14 C 0.04 1.07 2.72 85.56 0.23 1.30 16 15 N -0.51 -14.69 4.84 -865.04 -4.19 -18.87 16 16 C 0.02 0.63 5.53 86.77 0.48 1.11 16 17 C 0.10 2.30 4.42 31.98 0.14 2.44 16 18 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 19 O -0.57 -13.26 13.47 -148.98 -2.01 -15.27 16 20 C -0.11 -2.40 5.81 31.77 0.18 -2.22 16 21 C 0.07 1.57 3.78 45.26 0.17 1.74 16 22 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 23 C 0.06 1.02 5.12 71.98 0.37 1.39 16 24 O -0.58 -8.71 13.24 -148.98 -1.97 -10.68 16 25 H 0.07 1.67 8.14 -2.39 -0.02 1.66 16 26 H 0.07 1.99 8.07 -2.39 -0.02 1.97 16 27 H 0.09 1.87 6.44 -2.39 -0.02 1.85 16 28 H 0.02 1.29 8.07 -2.39 -0.02 1.27 16 29 H 0.00 -0.23 7.42 -2.39 -0.02 -0.25 16 30 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 31 H 0.13 2.81 6.05 -2.39 -0.01 2.79 16 32 H 0.08 1.97 6.03 -2.39 -0.01 1.96 16 33 H 0.04 1.33 7.60 -2.38 -0.02 1.31 16 34 H 0.07 2.38 7.45 -2.38 -0.02 2.37 16 35 H 0.40 6.35 9.12 -74.05 -0.68 5.67 16 36 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.07 1.66 7.85 -2.39 -0.02 1.64 16 38 H 0.07 0.94 6.63 -2.39 -0.02 0.92 16 39 H 0.06 0.83 6.73 -2.39 -0.02 0.81 16 40 H 0.40 2.27 9.12 -74.06 -0.68 1.60 16 Total: -1.00 -79.89 323.64 -3.93 -83.82 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -0.29 Total: 13.93 kcal Atomic # 6 Polarization: 10.11 SS G_CDS: 4.69 Total: 14.80 kcal Atomic # 7 Polarization: -96.91 SS G_CDS: -6.33 Total: -103.24 kcal Atomic # 8 Polarization: -52.28 SS G_CDS: -4.02 Total: -56.30 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -79.89 -3.93 -83.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698161547.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.118 kcal (2) G-P(sol) polarization free energy of solvation -79.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds