Wall clock time and date at job start Mon Mar 30 2020 05:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46493 * 120.00214 * 2 1 4 4 C 1.50697 * 109.47456 * 89.99847 * 3 2 1 5 5 H 1.08005 * 119.99915 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.00138 * 180.02562 * 4 3 2 7 7 N 1.31517 * 120.00151 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99889 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47232 * 59.99825 * 8 6 4 10 10 H 1.48505 * 109.47177 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47307 * 299.99494 * 8 6 4 12 12 C 1.34779 * 119.99581 * 179.97438 * 2 1 3 13 13 O 1.21281 * 120.00064 * 180.02562 * 12 2 1 14 14 C 1.50697 * 120.00069 * 0.02562 * 12 2 1 15 15 N 1.46901 * 109.47362 * 173.92436 * 14 12 2 16 16 C 1.47904 * 111.00023 * 294.39246 * 15 14 12 17 17 C 1.53991 * 107.05599 * 214.15457 * 16 15 14 18 18 H 1.08998 * 110.31023 * 120.23969 * 17 16 15 19 19 O 1.42902 * 110.30912 * 242.30523 * 17 16 15 20 20 C 1.54597 * 105.14072 * 1.21996 * 17 16 15 21 21 C 1.48529 * 111.00381 * 176.99184 * 15 14 12 22 22 H 1.09000 * 110.66491 * 41.28302 * 21 15 14 23 23 C 1.53002 * 110.66809 * 278.15741 * 21 15 14 24 24 O 1.42901 * 109.47233 * 294.99972 * 23 21 15 25 25 H 1.09000 * 109.47635 * 270.00626 * 1 2 3 26 26 H 1.08999 * 109.47313 * 149.99877 * 1 2 3 27 27 H 1.09010 * 109.46648 * 30.00493 * 1 2 3 28 28 H 1.09005 * 109.47166 * 209.99457 * 3 2 1 29 29 H 1.09000 * 109.47481 * 329.99247 * 3 2 1 30 30 H 0.96995 * 119.99672 * 180.02562 * 7 6 4 31 31 H 1.08999 * 109.47389 * 293.92506 * 14 12 2 32 32 H 1.09001 * 109.47246 * 53.92777 * 14 12 2 33 33 H 1.08998 * 109.91290 * 333.50609 * 16 15 14 34 34 H 1.08997 * 109.91741 * 94.60237 * 16 15 14 35 35 H 0.96700 * 114.00220 * 298.55154 * 19 17 16 36 36 H 1.09001 * 110.72076 * 140.32189 * 20 17 16 37 37 H 1.09001 * 110.72395 * 263.42379 * 20 17 16 38 38 H 1.09003 * 109.46764 * 54.99463 * 23 21 15 39 39 H 1.08994 * 109.47503 * 175.00093 * 23 21 15 40 40 H 0.96700 * 114.00387 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4487 1.7037 1.4208 5 1 2.0974 1.0962 2.2417 6 6 3.1260 2.8780 1.6727 7 7 3.5534 3.6181 0.6730 8 14 3.4367 3.4176 3.4338 9 1 4.2394 2.3830 4.1343 10 1 4.1794 4.7036 3.4338 11 1 2.1390 3.5950 4.1335 12 6 2.1388 -1.1673 0.0005 13 8 3.3516 -1.1674 0.0010 14 6 1.3852 -2.4723 0.0005 15 7 2.3330 -3.5851 -0.1455 16 6 2.9928 -3.5493 -1.4687 17 6 3.2255 -5.0100 -1.8971 18 1 2.7088 -5.2163 -2.8344 19 8 4.6239 -5.2697 -2.0350 20 6 2.6311 -5.8654 -0.7547 21 6 1.6328 -4.8932 -0.0773 22 1 0.6950 -4.8568 -0.6316 23 6 1.3867 -5.2989 1.3772 24 8 2.6392 -5.5215 2.0282 25 1 -0.3634 0.0001 1.0276 26 1 -0.3634 -0.8900 -0.5138 27 1 -0.3633 0.8900 -0.5140 28 1 3.1500 1.1382 -0.5138 29 1 1.6085 2.0283 -0.5139 30 1 4.0302 4.4439 0.8503 31 1 0.8422 -2.5784 0.9397 32 1 0.6798 -2.4846 -0.8304 33 1 2.3485 -3.0485 -2.1913 34 1 3.9453 -3.0247 -1.3946 35 1 5.0598 -4.7293 -2.7082 36 1 2.1108 -6.7355 -1.1550 37 1 3.4101 -6.1711 -0.0563 38 1 0.8471 -4.5026 1.8901 39 1 0.7956 -6.2142 1.4042 40 1 2.5594 -5.7821 2.9560 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698161548.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:29 Heat of formation + Delta-G solvation = -113.970703 kcal Electronic energy + Delta-G solvation = -21968.958715 eV Core-core repulsion = 18591.430932 eV Total energy + Delta-G solvation = -3377.527783 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.90380 -38.41316 -36.68922 -35.50864 -34.67320 -32.62018 -31.45947 -29.62991 -28.13879 -26.46156 -25.46105 -24.73665 -22.54043 -21.01755 -20.33039 -18.38220 -17.53021 -17.13944 -16.54709 -16.36707 -15.94183 -15.59247 -15.00846 -14.67513 -14.45495 -14.10642 -13.52732 -13.30535 -13.18949 -13.05463 -12.53842 -12.26625 -12.10430 -11.98436 -11.80622 -11.65970 -11.40278 -11.14830 -10.96426 -10.85925 -10.59082 -10.53066 -10.11790 -10.01276 -9.95358 -9.60795 -8.87190 -8.40029 -8.18346 -7.60157 -6.01180 -4.05539 3.34462 3.38934 3.41113 3.49489 3.64766 4.10097 4.15654 4.24828 4.48365 4.63838 4.75048 4.99412 5.07832 5.18494 5.21479 5.24707 5.30144 5.33988 5.42091 5.51723 5.62976 5.66122 5.69500 5.82315 5.95685 6.16503 6.22556 6.29277 6.91345 6.94893 7.14888 7.45971 7.58312 7.66842 7.70907 7.95435 8.26853 8.44991 8.94190 9.17035 9.59482 11.06941 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.022631 B = 0.004544 C = 0.004411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.926188 B = 6160.499091 C = 6346.090298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.607 5.607 3 C 0.248 3.752 4 C -0.525 4.525 5 H 0.056 0.944 6 C 0.061 3.939 7 N -0.897 5.897 8 Si 0.898 3.102 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.277 1.277 12 C 0.505 3.495 13 O -0.519 6.519 14 C 0.027 3.973 15 N -0.476 5.476 16 C 0.011 3.989 17 C 0.094 3.906 18 H 0.058 0.942 19 O -0.559 6.559 20 C -0.106 4.106 21 C 0.060 3.940 22 H 0.065 0.935 23 C 0.094 3.906 24 O -0.552 6.552 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.067 0.933 28 H 0.043 0.957 29 H 0.031 0.969 30 H 0.263 0.737 31 H 0.097 0.903 32 H 0.054 0.946 33 H 0.042 0.958 34 H 0.102 0.898 35 H 0.378 0.622 36 H 0.072 0.928 37 H 0.102 0.898 38 H 0.046 0.954 39 H 0.047 0.953 40 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.987 -17.856 -4.121 20.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.341 5.341 3 C 0.128 3.872 4 C -0.564 4.564 5 H 0.074 0.926 6 C -0.141 4.141 7 N -0.536 5.536 8 Si 0.726 3.274 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.203 1.203 12 C 0.290 3.710 13 O -0.394 6.394 14 C -0.105 4.105 15 N -0.200 5.200 16 C -0.117 4.117 17 C 0.035 3.965 18 H 0.076 0.924 19 O -0.364 6.364 20 C -0.144 4.144 21 C -0.048 4.048 22 H 0.082 0.918 23 C 0.015 3.985 24 O -0.356 6.356 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.086 0.914 28 H 0.061 0.939 29 H 0.049 0.951 30 H 0.073 0.927 31 H 0.115 0.885 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.120 0.880 35 H 0.225 0.775 36 H 0.090 0.910 37 H 0.120 0.880 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -7.750 -17.858 -3.878 19.849 hybrid contribution -0.881 0.833 0.467 1.300 sum -8.631 -17.024 -3.410 19.389 Atomic orbital electron populations 1.21612 0.81707 1.01426 1.01095 1.48169 1.06004 1.07824 1.72099 1.19268 0.92484 0.77924 0.97481 1.21396 1.36463 1.06185 0.92329 0.92580 1.24931 0.95339 0.96389 0.97438 1.69922 1.38460 1.14396 1.30787 0.86554 0.78328 0.77810 0.84711 1.20123 1.21176 1.20304 1.20055 0.88275 0.84542 0.78153 1.90677 1.13533 1.86742 1.48490 1.22333 0.94338 0.91504 1.02303 1.64454 1.25715 0.99573 1.30307 1.23689 1.02072 0.96674 0.89264 1.22679 0.82516 0.93986 0.97363 0.92418 1.86546 1.21216 1.65765 1.62864 1.22408 0.98796 0.96298 0.96880 1.22898 0.96243 0.90488 0.95215 0.91763 1.21924 0.85964 0.98241 0.92339 1.86636 1.29210 1.91750 1.27980 0.93257 0.92950 0.91396 0.93937 0.95121 0.92700 0.88461 0.92810 0.93995 0.87979 0.77469 0.90970 0.87978 0.93531 0.93528 0.78127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.35 10.31 59.85 0.62 1.97 16 2 N -0.61 -13.09 2.86 -182.96 -0.52 -13.61 16 3 C 0.25 6.60 5.20 -5.20 -0.03 6.58 16 4 C -0.52 -15.25 9.39 -34.44 -0.32 -15.57 16 5 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 6 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 7 N -0.90 -27.07 13.29 55.43 0.74 -26.33 16 8 Si 0.90 22.32 29.54 -169.99 -5.02 17.30 16 9 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 C 0.50 10.80 7.36 -10.99 -0.08 10.72 16 13 O -0.52 -13.56 14.60 5.56 0.08 -13.48 16 14 C 0.03 0.42 3.90 -4.98 -0.02 0.40 16 15 N -0.48 -7.55 4.66 -224.06 -1.04 -8.60 16 16 C 0.01 0.17 5.46 -2.75 -0.02 0.15 16 17 C 0.09 1.17 4.36 -25.37 -0.11 1.06 16 18 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 19 O -0.56 -7.44 13.26 -35.23 -0.47 -7.91 16 20 C -0.11 -1.27 6.17 -24.87 -0.15 -1.43 16 21 C 0.06 0.71 2.74 -65.79 -0.18 0.53 16 22 H 0.06 0.62 8.02 -51.93 -0.42 0.20 16 23 C 0.09 1.00 6.96 37.16 0.26 1.25 16 24 O -0.55 -6.97 12.36 -35.23 -0.44 -7.41 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.05 0.63 6.28 -51.93 -0.33 0.30 16 27 H 0.07 1.03 7.89 -51.92 -0.41 0.62 16 28 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 29 H 0.03 0.82 7.89 -51.93 -0.41 0.41 16 30 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 31 H 0.10 1.38 7.22 -51.93 -0.38 1.01 16 32 H 0.05 0.69 6.87 -51.93 -0.36 0.34 16 33 H 0.04 0.59 7.64 -51.93 -0.40 0.19 16 34 H 0.10 1.87 7.14 -51.93 -0.37 1.50 16 35 H 0.38 3.54 9.11 45.56 0.41 3.95 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.10 1.49 6.95 -51.93 -0.36 1.13 16 38 H 0.05 0.49 7.24 -51.93 -0.38 0.11 16 39 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.37 2.96 9.12 45.56 0.42 3.38 16 LS Contribution 326.67 15.07 4.92 4.92 Total: -1.00 -37.52 326.67 -6.47 -43.99 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -4.59 Total: 3.78 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: -0.13 Total: 7.35 kcal Atomic # 7 Polarization: -47.71 SS G_CDS: -0.83 Total: -48.54 kcal Atomic # 8 Polarization: -27.98 SS G_CDS: -0.82 Total: -28.80 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -37.52 -6.47 -43.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698161548.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.979 kcal (2) G-P(sol) polarization free energy of solvation -37.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds